F250922

General Info

Members Datasets Scaffolds Average Seq Length
167 109 154 114

Family's Representative Sequence

Representative Sequence 3300037418|Ga0395900_1224960|Ga0395900_1224960_59_457
Length 132
Sequence MTPRPKSAPPLAGQAAADHIDAAIRALGDWRGDRLAQIRRLVREADPDVVEEVKWGRTPTWSHAGILCTGETYKAAVKTTFARGAALADPSKLFNASLDAGTRRAIDIVEGEELDEDAFVALVREAVERNRA

Samples

Sample ID Description Type Environment
1 2643221576 Nocardioides sp. Root614 Isolate Unclassified
2 2643221590 Nocardioides sp. Root682 Isolate Unclassified
3 2643221604 Nocardioides sp. Root190 Isolate Unclassified
4 2643221617 Nocardioides sp. Root79 Isolate Unclassified
5 2643221620 Nocardioides sp. Root240 Isolate Unclassified
6 2643221641 Nocardioides sp. Root122 Isolate Unclassified
7 2643221697 Aeromicrobium sp. Root495 Isolate Unclassified
8 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
9 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
10 2738541305 Nocardioides sp. CF167 Isolate Unclassified
11 2738543034 Rhodococcus sp. OK269 Isolate Unclassified
12 2739367898 Nocardioides sp. CF479 Isolate Unclassified
13 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
14 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
15 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
16 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
24 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
25 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
26 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
27 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
28 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
33 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
34 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
42 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
44 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
45 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
46 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
47 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
48 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
49 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
50 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
51 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
52 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
53 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
54 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
55 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
56 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
57 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
58 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
59 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
60 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
61 3300041462 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG Metagenome Rhizoplane
62 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
63 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
64 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
65 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
66 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
67 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
68 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
69 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
70 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
71 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
72 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
73 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
74 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
75 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
76 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
77 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
78 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
79 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
80 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
81 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
82 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
89 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
90 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
91 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
92 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
93 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
94 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
96 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
97 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
98 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
99 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
100 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
101 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
102 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
103 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
104 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
105 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
106 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
107 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
108 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
109 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.62
Metatranscriptomes 0.6
Isolates 7.78

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 34.73
Nodule 0
Rhizoplane 4.79
Rhizosphere 45.51
Stem 0
Stem Tuber 0
Unclassified 14.97

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006562J51391_1075185 3300003578 Bacteria 1310
2 Ga0070658_10612891 3300005327 Bacteria 944
3 Ga0070660_101450228 3300005339 Bacteria 583
4 Ga0070667_100001087 3300005367 Bacteria 24897
5 Ga0070667_100019636 3300005367 Bacteria 5606
6 Ga0070679_100820264 3300005530 Bacteria 873
7 Ga0068852_101821751 3300005616 Bacteria 631
8 Ga0068861_100703500 3300005719 Bacteria 939
9 Ga0068858_100191397 3300005842 Bacteria 1933
10 Ga0068860_100000753 3300005843 Bacteria 36783
11 Ga0075365_10005457 3300006038 Bacteria 6859
12 Ga0075365_10011407 3300006038 Bacteria 5224
13 Ga0075365_10063009 3300006038 Bacteria 2481
14 Ga0075365_10064586 3300006038 Bacteria 2452
15 Ga0075365_10072492 3300006038 Bacteria 2320
16 Ga0075365_10082998 3300006038 Bacteria 2174
17 Ga0075365_10175627 3300006038 Bacteria 1496
18 Ga0075365_10381502 3300006038 Bacteria 994
19 Ga0075365_10408843 3300006038 Bacteria 958
20 Ga0075365_10628191 3300006038 Bacteria 759
21 Ga0075365_11135767 3300006038 Bacteria 550
22 Ga0075368_10036260 3300006042 Bacteria 1927
23 Ga0075368_10061136 3300006042 Bacteria 1508
24 Ga0075363_100003471 3300006048 Bacteria 6703
25 Ga0075363_100008332 3300006048 Bacteria 4822
26 Ga0075363_100089360 3300006048 Bacteria 1694
27 Ga0075363_100812302 3300006048 Bacteria 569
28 Ga0075364_10016461 3300006051 Bacteria 4601
29 Ga0075364_10026768 3300006051 Bacteria 3681
30 Ga0075364_10038528 3300006051 Bacteria 3096
31 Ga0075364_10074780 3300006051 Bacteria 2234
32 Ga0075364_10674341 3300006051 Bacteria 706
33 Ga0075367_10020851 3300006178 Bacteria 3655
34 Ga0075367_10594643 3300006178 Bacteria 703
35 Ga0075370_10007346 3300006353 Bacteria 5607
36 Ga0111539_10175099 3300009094 Bacteria 2506
37 Ga0105239_10014705 3300010375 Bacteria 8679
38 Ga0157375_10157713 3300013308 Bacteria 2409
39 Ga0157380_10424000 3300014326 Bacteria 1270
40 Ga0163161_10329283 3300017792 Bacteria 1209
41 Ga0207680_10150885 3300025903 Bacteria 1549
42 Ga0207671_10042826 3300025914 Bacteria 3350
43 Ga0207652_10816604 3300025921 Bacteria 827
44 Ga0207668_11373124 3300025972 Bacteria 637
45 Ga0207658_10002610 3300025986 Bacteria 13089
46 Ga0207658_10047753 3300025986 Bacteria 3135
47 Ga0207703_10168697 3300026035 Bacteria 1923
48 Ga0207698_11391759 3300026142 Bacteria 716
49 Ga0209813_10048143 3300027866 Bacteria 1322
50 Ga0268264_10000587 3300028381 Bacteria 44141
51 Ga0316181_1150654 3300030744 Bacteria 831
52 Ga0307408_102253648 3300031548 Bacteria 527
53 Ga0307413_10268101 3300031824 Bacteria 1277
54 Ga0307413_11607248 3300031824 Bacteria 577
55 Ga0307410_10288966 3300031852 Bacteria 1290
56 Ga0307407_10100382 3300031903 Bacteria 1795
57 Ga0307407_10424926 3300031903 Bacteria 959
58 Ga0307407_10497785 3300031903 Bacteria 893
59 Ga0307412_10814562 3300031911 Bacteria 812
60 Ga0307409_100580272 3300031995 Bacteria 1105
61 Ga0307409_100685970 3300031995 Bacteria 1022
62 Ga0307409_101618846 3300031995 Bacteria 676
63 Ga0307416_100881993 3300032002 Bacteria 994
64 Ga0307414_11001515 3300032004 Bacteria 769
65 Ga0307414_11564005 3300032004 Bacteria 614
66 Ga0307411_10440136 3300032005 Bacteria 1088
67 Ga0307411_11266934 3300032005 Bacteria 671
68 Ga0307411_11404537 3300032005 Bacteria 639
69 Ga0307415_100233387 3300032126 Bacteria 1483
70 Ga0307415_100415997 3300032126 Bacteria 1152
71 Ga0307415_100879461 3300032126 Bacteria 824
72 Ga0373960_0174544 3300035121 Bacteria 747
73 Ga0395899_0329822 3300037312 Bacteria 1026
74 Ga0395900_0020709 3300037418 Bacteria 6721
75 Ga0395900_0042242 3300037418 Bacteria 4697
76 Ga0395900_1040977 3300037418 Bacteria 737
77 Ga0395900_1224960 3300037418 Bacteria 666
78 Ga0395898_0095112 3300037466 Bacteria 2863
79 Ga0395898_0220390 3300037466 Bacteria 1810
80 Ga0395901_0060928 3300038443 Bacteria 3927
81 Ga0451793_0200413 3300041452 Bacteria 984
82 Ga0451802_0091765 3300041460 Bacteria 507
83 Ga0451806_048491 3300041462 Bacteria 655
84 Ga0451839_0361012 3300041496 Bacteria 599
85 Ga0439458_0155362 3300042157 Bacteria 614
86 Ga0466972_0101310 3300044658 Bacteria 1363
87 Ga0466965_0131295 3300044683 Bacteria 1299
88 Ga0466970_0412348 3300044765 Bacteria 772
89 Ga0466970_0536319 3300044765 Bacteria 676
90 Ga0466960_0180116 3300044901 Bacteria 1145
91 Ga0496104_0378281 3300048907 Bacteria 1329
92 Ga0496106_0110362 3300048909 Bacteria 2141
93 Ga0496107_0357140 3300048910 Bacteria 1087
94 Ga0496109_0654137 3300048912 Bacteria 988
95 Ga0496113_0472094 3300048916 Bacteria 1008
96 Ga0496116_0018178 3300048919 Bacteria 5429
97 Ga0496117_0029612 3300048920 Bacteria 4217
98 Ga0496118_0227227 3300048921 Bacteria 1080
99 Ga0496119_0031497 3300048922 Bacteria 3555
100 Ga0496120_0002777 3300048923 Bacteria 17021
101 Ga0496122_0000059 3300048925 Bacteria 247170
102 Ga0496123_0000013 3300048926 Bacteria 439694
103 Ga0496125_0010074 3300048928 Bacteria 9589
104 Ga0496126_0072831 3300048929 Bacteria 3055
105 Ga0496126_0784289 3300048929 Bacteria 733
106 Ga0501034_0794535 3300049571 Bacteria 839
107 Ga0501036_0500112 3300049572 Bacteria 1011
108 Ga0501039_0081897 3300049575 Bacteria 2513
109 Ga0501040_0207288 3300049576 Bacteria 1393
110 Ga0501046_0161332 3300049580 Bacteria 1686
111 Ga0501046_0532042 3300049580 Bacteria 839
112 Ga0501047_0573248 3300049581 Bacteria 952
113 Ga0501068_0994389 3300049584 Bacteria 553
114 Ga0501069_0163125 3300049585 Bacteria 1284
115 Ga0501072_0099378 3300049588 Bacteria 2313
116 Ga0501076_0380668 3300049592 Bacteria 1160
117 Ga0501077_0236122 3300049593 Bacteria 1162
118 Ga0501079_0688285 3300049741 Bacteria 805
119 Ga0501035_0511703 3300049822 Bacteria 987
120 Ga0501045_0122009 3300049824 Bacteria 1935
121 nmdc:mga03n38_100570_c1 3300050490 Bacteria 1394
122 nmdc:mga03n38_164356_c1 3300050490 Bacteria 1126
123 nmdc:mga03n38_740715_c1 3300050490 Bacteria 569
124 nmdc:mga00v17_15201_c1 3300050491 Bacteria 4315
125 nmdc:mga00v17_250172_c1 3300050491 Bacteria 1149
126 nmdc:mga00v17_454_c2 3300050491 Bacteria 5620
127 nmdc:mga00v17_64764_c1 3300050491 Bacteria 2253
128 nmdc:mga00v17_650461_c1 3300050491 Bacteria 678
129 nmdc:mga0yw44_1215064_c1 3300050492 Bacteria 508
130 nmdc:mga0yw44_251068_c1 3300050492 Bacteria 1177
131 nmdc:mga0yw44_285002_c1 3300050492 Bacteria 1105
132 nmdc:mga0yw44_332537_c1 3300050492 Bacteria 1021
133 nmdc:mga0yw44_371989_c1 3300050492 Bacteria 964
134 nmdc:mga0yw44_461621_c1 3300050492 Bacteria 861
135 nmdc:mga0yw44_474793_c1 3300050492 Bacteria 848
136 nmdc:mga0yw44_563999_c1 3300050492 Bacteria 773
137 nmdc:mga0yw44_6470_c1 3300050492 Bacteria 5668
138 nmdc:mga0yw44_69620_c1 3300050492 Bacteria 2180
139 nmdc:mga0yw44_724410_c1 3300050492 Bacteria 676
140 nmdc:mga0yw44_746495_c1 3300050492 Bacteria 665
141 nmdc:mga0yw44_92874_c1 3300050492 Bacteria 1910
142 nmdc:mga06z11_26461_c1 3300050494 Bacteria 2760
143 nmdc:mga06z11_946927_c1 3300050494 Bacteria 525
144 nmdc:mga04h51_48032_c1 3300050495 Bacteria 1420
145 nmdc:mga07m45_576516_c1 3300050496 Bacteria 650
146 Ga0500554_076112 3300053102 Bacteria 1099
147 Ga0500556_0000007 3300053104 Bacteria 331400
148 Ga0500556_0000671 3300053104 Bacteria 21241
149 Ga0500593_000209 3300053117 Bacteria 24034
150 Ga0500568_0000009 3300053139 Bacteria 270298
151 Ga0500573_0042231 3300053140 Bacteria 2633
152 Ga0500620_165918 3300053155 Bacteria 765
153 Ga0501084_0069315 3300054114 Bacteria 2953
154 Ga0501082_0602651 3300060353 Bacteria 961

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037418 Ga0395900_1224960 Ga0395900_1224960_59_457 107
2 iso_pu_bacteria 2643221576 2643891476 109
3 iso_pu_bacteria 2643221590 2643960524 109
4 iso_pu_bacteria 2643221604 2644036122 109
5 iso_pu_bacteria 2643221617 2644102096 109
6 iso_pu_bacteria 2643221620 2644115319 109
7 iso_pu_bacteria 2643221641 2644229680 109
8 iso_pu_bacteria 2643221697 2644536292 109
9 iso_pu_bacteria 2643221961 2645720494 109
10 iso_pu_bacteria 2643221962 2645723453 109
11 iso_pu_bacteria 2738541305 2738870288 109
12 iso_pu_bacteria 2738543034 2739367300 109
13 iso_pu_bacteria 2739367898 2740168291 109
14 iso_pu_bacteria 2811994874 2812333324 109
15 3300044765 Ga0466970_0412348 Ga0466970_0412348_422_757 111
16 3300005339 Ga0070660_101450228 Ga0070660_1014502281 112
17 3300006038 Ga0075365_10011407 Ga0075365_100114076 112
18 3300006038 Ga0075365_10064586 Ga0075365_100645863 112
19 3300006048 Ga0075363_100008332 Ga0075363_1000083325 112
20 3300006048 Ga0075363_100812302 Ga0075363_1008123021 112
21 3300006051 Ga0075364_10016461 Ga0075364_100164614 112
22 3300006353 Ga0075370_10007346 Ga0075370_100073468 112
23 3300035121 Ga0373960_0174544 Ga0373960_0174544_349_687 112
24 3300041496 Ga0451839_0361012 Ga0451839_0361012_148_486 112
25 3300042157 Ga0439458_0155362 Ga0439458_0155362_104_448 112
26 3300044683 Ga0466965_0131295 Ga0466965_0131295_354_692 112
27 3300044901 Ga0466960_0180116 Ga0466960_0180116_434_772 112
28 3300049571 Ga0501034_0794535 Ga0501034_0794535_94_432 112
29 3300050490 nmdc:mga03n38_740715_c1 nmdc:mga03n38_740715_c1_114_452 112
30 3300050491 nmdc:mga00v17_15201_c1 nmdc:mga00v17_15201_c1_688_1026 112
31 3300050492 nmdc:mga0yw44_6470_c1 nmdc:mga0yw44_6470_c1_1045_1383 112
32 3300050492 nmdc:mga0yw44_92874_c1 nmdc:mga0yw44_92874_c1_186_524 112
33 3300003578 Ga0006562J51391_1075185 Ga0006562J51391_10751852 113
34 3300005327 Ga0070658_10612891 Ga0070658_106128912 113
35 3300005367 Ga0070667_100001087 Ga0070667_10000108719 113
36 3300005367 Ga0070667_100019636 Ga0070667_1000196365 113
37 3300005530 Ga0070679_100820264 Ga0070679_1008202642 113
38 3300005616 Ga0068852_101821751 Ga0068852_1018217512 113
39 3300005719 Ga0068861_100703500 Ga0068861_1007035002 113
40 3300005842 Ga0068858_100191397 Ga0068858_1001913972 113
41 3300005843 Ga0068860_100000753 Ga0068860_10000075327 113
42 3300006038 Ga0075365_10005457 Ga0075365_100054577 113
43 3300006038 Ga0075365_10063009 Ga0075365_100630094 113
44 3300006038 Ga0075365_10072492 Ga0075365_100724922 113
45 3300006038 Ga0075365_10082998 Ga0075365_100829983 113
46 3300006038 Ga0075365_10175627 Ga0075365_101756272 113
47 3300006038 Ga0075365_10381502 Ga0075365_103815022 113
48 3300006038 Ga0075365_10408843 Ga0075365_104088432 113
49 3300006038 Ga0075365_10628191 Ga0075365_106281912 113
50 3300006038 Ga0075365_11135767 Ga0075365_111357671 113
51 3300006042 Ga0075368_10036260 Ga0075368_100362603 113
52 3300006042 Ga0075368_10061136 Ga0075368_100611362 113
53 3300006048 Ga0075363_100003471 Ga0075363_1000034716 113
54 3300006048 Ga0075363_100089360 Ga0075363_1000893603 113
55 3300006051 Ga0075364_10026768 Ga0075364_100267681 113
56 3300006051 Ga0075364_10038528 Ga0075364_100385284 113
57 3300006051 Ga0075364_10074780 Ga0075364_100747802 113
58 3300006051 Ga0075364_10674341 Ga0075364_106743412 113
59 3300006178 Ga0075367_10020851 Ga0075367_100208514 113
60 3300006178 Ga0075367_10594643 Ga0075367_105946431 113
61 3300009094 Ga0111539_10175099 Ga0111539_101750993 113
62 3300010375 Ga0105239_10014705 Ga0105239_100147056 113
63 3300013308 Ga0157375_10157713 Ga0157375_101577132 113
64 3300014326 Ga0157380_10424000 Ga0157380_104240001 113
65 3300017792 Ga0163161_10329283 Ga0163161_103292833 113
66 3300025903 Ga0207680_10150885 Ga0207680_101508853 113
67 3300025914 Ga0207671_10042826 Ga0207671_100428263 113
68 3300025921 Ga0207652_10816604 Ga0207652_108166042 113
69 3300025972 Ga0207668_11373124 Ga0207668_113731242 113
70 3300025986 Ga0207658_10002610 Ga0207658_1000261014 113
71 3300025986 Ga0207658_10047753 Ga0207658_100477535 113
72 3300026035 Ga0207703_10168697 Ga0207703_101686972 113
73 3300026142 Ga0207698_11391759 Ga0207698_113917592 113
74 3300027866 Ga0209813_10048143 Ga0209813_100481432 113
75 3300028381 Ga0268264_10000587 Ga0268264_1000058718 113
76 3300030744 Ga0316181_1150654 Ga0316181_11506542 113
77 3300031548 Ga0307408_102253648 Ga0307408_1022536481 113
78 3300031824 Ga0307413_10268101 Ga0307413_102681012 113
79 3300031824 Ga0307413_11607248 Ga0307413_116072481 113
80 3300031852 Ga0307410_10288966 Ga0307410_102889662 113
81 3300031903 Ga0307407_10100382 Ga0307407_101003821 113
82 3300031903 Ga0307407_10424926 Ga0307407_104249262 113
83 3300031903 Ga0307407_10497785 Ga0307407_104977852 113
84 3300031911 Ga0307412_10814562 Ga0307412_108145622 113
85 3300031995 Ga0307409_100580272 Ga0307409_1005802722 113
86 3300031995 Ga0307409_100685970 Ga0307409_1006859701 113
87 3300031995 Ga0307409_101618846 Ga0307409_1016188462 113
88 3300032002 Ga0307416_100881993 Ga0307416_1008819932 113
89 3300032004 Ga0307414_11001515 Ga0307414_110015151 113
90 3300032004 Ga0307414_11564005 Ga0307414_115640052 113
91 3300032005 Ga0307411_10440136 Ga0307411_104401362 113
92 3300032005 Ga0307411_11266934 Ga0307411_112669342 113
93 3300032005 Ga0307411_11404537 Ga0307411_114045371 113
94 3300032126 Ga0307415_100233387 Ga0307415_1002333871 113
95 3300032126 Ga0307415_100415997 Ga0307415_1004159971 113
96 3300032126 Ga0307415_100879461 Ga0307415_1008794612 113
97 3300037312 Ga0395899_0329822 Ga0395899_0329822_486_827 113
98 3300037418 Ga0395900_0020709 Ga0395900_0020709_2471_2812 113
99 3300037418 Ga0395900_0042242 Ga0395900_0042242_1575_1916 113
100 3300037418 Ga0395900_1040977 Ga0395900_1040977_239_580 113
101 3300037466 Ga0395898_0095112 Ga0395898_0095112_1521_1862 113
102 3300037466 Ga0395898_0220390 Ga0395898_0220390_835_1176 113
103 3300038443 Ga0395901_0060928 Ga0395901_0060928_201_542 113
104 3300041452 Ga0451793_0200413 Ga0451793_0200413_405_746 113
105 3300041460 Ga0451802_0091765 Ga0451802_0091765_45_422 113
106 3300041462 Ga0451806_048491 Ga0451806_048491_213_554 113
107 3300044658 Ga0466972_0101310 Ga0466972_0101310_664_1005 113
108 3300044765 Ga0466970_0536319 Ga0466970_0536319_38_379 113
109 3300048907 Ga0496104_0378281 Ga0496104_0378281_119_460 113
110 3300048909 Ga0496106_0110362 Ga0496106_0110362_872_1213 113
111 3300048910 Ga0496107_0357140 Ga0496107_0357140_585_926 113
112 3300048912 Ga0496109_0654137 Ga0496109_0654137_295_636 113
113 3300048916 Ga0496113_0472094 Ga0496113_0472094_242_583 113
114 3300048919 Ga0496116_0018178 Ga0496116_0018178_4238_4579 113
115 3300048920 Ga0496117_0029612 Ga0496117_0029612_1399_1740 113
116 3300048921 Ga0496118_0227227 Ga0496118_0227227_626_967 113
117 3300048922 Ga0496119_0031497 Ga0496119_0031497_1701_2042 113
118 3300048923 Ga0496120_0002777 Ga0496120_0002777_8543_8884 113
119 3300048925 Ga0496122_0000059 Ga0496122_0000059_167547_167888 113
120 3300048926 Ga0496123_0000013 Ga0496123_0000013_408892_409233 113
121 3300048928 Ga0496125_0010074 Ga0496125_0010074_8038_8379 113
122 3300048929 Ga0496126_0072831 Ga0496126_0072831_1916_2257 113
123 3300048929 Ga0496126_0784289 Ga0496126_0784289_137_478 113
124 3300049572 Ga0501036_0500112 Ga0501036_0500112_273_614 113
125 3300049575 Ga0501039_0081897 Ga0501039_0081897_637_978 113
126 3300049576 Ga0501040_0207288 Ga0501040_0207288_1024_1365 113
127 3300049580 Ga0501046_0161332 Ga0501046_0161332_750_1091 113
128 3300049580 Ga0501046_0532042 Ga0501046_0532042_93_443 113
129 3300049581 Ga0501047_0573248 Ga0501047_0573248_546_911 113
130 3300049584 Ga0501068_0994389 Ga0501068_0994389_158_499 113
131 3300049585 Ga0501069_0163125 Ga0501069_0163125_219_560 113
132 3300049588 Ga0501072_0099378 Ga0501072_0099378_136_477 113
133 3300049592 Ga0501076_0380668 Ga0501076_0380668_345_686 113
134 3300049593 Ga0501077_0236122 Ga0501077_0236122_517_858 113
135 3300049741 Ga0501079_0688285 Ga0501079_0688285_334_675 113
136 3300049822 Ga0501035_0511703 Ga0501035_0511703_304_645 113
137 3300049824 Ga0501045_0122009 Ga0501045_0122009_1378_1719 113
138 3300050490 nmdc:mga03n38_100570_c1 nmdc:mga03n38_100570_c1_503_844 113
139 3300050490 nmdc:mga03n38_164356_c1 nmdc:mga03n38_164356_c1_602_943 113
140 3300050491 nmdc:mga00v17_250172_c1 nmdc:mga00v17_250172_c1_676_1017 113
141 3300050491 nmdc:mga00v17_454_c2 nmdc:mga00v17_454_c2_2975_3316 113
142 3300050491 nmdc:mga00v17_64764_c1 nmdc:mga00v17_64764_c1_878_1219 113
143 3300050491 nmdc:mga00v17_650461_c1 nmdc:mga00v17_650461_c1_309_650 113
144 3300050492 nmdc:mga0yw44_1215064_c1 nmdc:mga0yw44_1215064_c1_45_425 113
145 3300050492 nmdc:mga0yw44_251068_c1 nmdc:mga0yw44_251068_c1_223_564 113
146 3300050492 nmdc:mga0yw44_285002_c1 nmdc:mga0yw44_285002_c1_457_798 113
147 3300050492 nmdc:mga0yw44_332537_c1 nmdc:mga0yw44_332537_c1_291_635 113
148 3300050492 nmdc:mga0yw44_371989_c1 nmdc:mga0yw44_371989_c1_597_938 113
149 3300050492 nmdc:mga0yw44_461621_c1 nmdc:mga0yw44_461621_c1_323_664 113
150 3300050492 nmdc:mga0yw44_474793_c1 nmdc:mga0yw44_474793_c1_220_561 113
151 3300050492 nmdc:mga0yw44_563999_c1 nmdc:mga0yw44_563999_c1_342_683 113
152 3300050492 nmdc:mga0yw44_69620_c1 nmdc:mga0yw44_69620_c1_352_693 113
153 3300050492 nmdc:mga0yw44_724410_c1 nmdc:mga0yw44_724410_c1_43_384 113
154 3300050492 nmdc:mga0yw44_746495_c1 nmdc:mga0yw44_746495_c1_144_485 113
155 3300050494 nmdc:mga06z11_26461_c1 nmdc:mga06z11_26461_c1_960_1301 113
156 3300050494 nmdc:mga06z11_946927_c1 nmdc:mga06z11_946927_c1_155_496 113
157 3300050495 nmdc:mga04h51_48032_c1 nmdc:mga04h51_48032_c1_486_827 113
158 3300050496 nmdc:mga07m45_576516_c1 nmdc:mga07m45_576516_c1_154_495 113
159 3300053102 Ga0500554_076112 Ga0500554_076112_438_779 113
160 3300053104 Ga0500556_0000007 Ga0500556_0000007_47222_47563 113
161 3300053104 Ga0500556_0000671 Ga0500556_0000671_14525_14866 113
162 3300053117 Ga0500593_000209 Ga0500593_000209_2719_3060 113
163 3300053139 Ga0500568_0000009 Ga0500568_0000009_230837_231178 113
164 3300053140 Ga0500573_0042231 Ga0500573_0042231_910_1251 113
165 3300053155 Ga0500620_165918 Ga0500620_165918_61_402 113
166 3300054114 Ga0501084_0069315 Ga0501084_0069315_1677_2018 113
167 3300060353 Ga0501082_0602651 Ga0501082_0602651_181_522 113

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08818

DUF1801

Domain of unknown function (DU1801)

31

127

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
2oc6-assembly2.cif.gz_B crystal structure of a protein from the duf1801 family (ydhg, bsu05750) from bacillus subtilis at 1.75 a resolution 0.7368 2 112
2kl4-assembly1.cif.gz_A nmr structure of the protein nb7804a 0.6987 1 113
2oc6-assembly2.cif.gz_B crystal structure of a protein from the duf1801 family (ydhg, bsu05750) from bacillus subtilis at 1.75 a resolution 0.6809 2 112
4a46-assembly1.cif.gz_A crosstalk between cu(i) and zn(ii) homeostasis 0.6618 7 44
2kl4-assembly1.cif.gz_A nmr structure of the protein nb7804a 0.6537 1 113
ID Description Score Start End Superfamily
2oc6B01 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1; 0.735 1 113 3.90.1150.200
af_Q2FVG5_6_119_3.90.1150.200 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1; 0.7181 1 113 3.90.1150.200
af_Q2FVG5_6_119_3.90.1150.200 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1; 0.6648 1 113 3.90.1150.200
1iw7D10 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.646 48 96 2.40.50.100
af_P0AF50_1_117_3.90.1150.30 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1; 0.6356 10 111 3.90.1150.30
ID Description Score Start End GO Terms
AF-A0A370D3G0-F1-model_v4 deleted 0.9946 4 113
AF-A0A4V5MSA1-F1-model_v4 deleted 0.994 4 113
AF-A0A2W6BZP3-F1-model_v4 YdhG-like domain-containing protein 0.9925 4 112
AF-A0A511HFV5-F1-model_v4 YdhG-like domain-containing protein 0.9913 4 112
AF-A0A1S7P227-F1-model_v4 YdhG-like domain-containing protein 0.9909 4 112

Feature Viewer

pLDDT pTM Quality
92.81 0.87 High
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Predicted Structure (AlphaFold2)

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