F249467

General Info

Members Datasets Scaffolds Average Seq Length
166 124 332 383

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2977264416|2977267112
Length 459
Sequence PAPPRTSPLNDRHEALGASFTDFGGWNMPVRYTSDLAEHRAVREAAGLFDISHMAEFRVEGEAAAAFLDYVLAGRLSTMKIGKAKYSLVLAESGGIVDDVIVYRTGEQSFLVISNAGNRDAVAAAFDLAQRTWVPATEVPEPATEVPEPATEVPEPATEVPEPATEVPEPATEVPEPVEGTKTLATAAPASDASTGSATAAGGTPTVAAPASDASTGSATGAGGSLAVADVTDDYALIALQGPEARGILSSTPGVEITGTALDELGYYAWTEGTFQGAPLFVARTGYTGEDGYELMIPTAQAAPLWDAALAVGADRGLVPCGLAARDTLRLEAGMPLYGHELSRDIVPAQAGLGRVVAVDKEAFIGKDGLSSGPADAPVLVGLVSEGRRAGRAGYAVLHGDDTVGEITSGALSPTLGHPVAMAFVAPAASAIGTELSIDVRGTRIPATVTALPFYRRNA

Samples

Sample ID Description Type Environment
1 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
2 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
6 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
7 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
8 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
9 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
10 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
11 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
12 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
13 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
14 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
15 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
16 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
18 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
19 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
21 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
22 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
23 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
24 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
25 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
26 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
27 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
28 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
29 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
30 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
31 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
32 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
33 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
34 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
35 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
36 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
37 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
38 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
39 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
40 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
41 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
42 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
43 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
44 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
45 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
46 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
47 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
48 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
49 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
50 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
51 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
52 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
53 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
54 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
55 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
56 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
57 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
58 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
60 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
61 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
62 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
63 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
64 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
65 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
66 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
67 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
68 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
69 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
70 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
71 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
72 2643221566 Microbacterium sp. Root166 Isolate Unclassified
73 2643221575 Microbacterium sp. Root61 Isolate Unclassified
74 2643221597 Microbacterium sp. Root180 Isolate Unclassified
75 2643221635 Yonghaparkia sp. Root332 Isolate Unclassified
76 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
77 2643221694 Cellulomonas sp. Root137 Isolate Unclassified
78 2643221722 Cellulomonas sp. Root930 Isolate Unclassified
79 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
80 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
81 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
82 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
83 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
84 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
85 2811994880 Cellulomonas sp. SLBN-39 Isolate Unclassified
86 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
87 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
88 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
89 2848551377 Brachybacterium saurashtrense DSM 23186 Isolate Unclassified
90 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
91 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
92 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
93 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
94 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
95 2857710386 Brevibacterium sp. R-73093 Isolate Unclassified
96 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
97 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
98 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
99 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
100 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
101 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
102 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
103 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
104 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
105 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
106 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
107 2919069694 Microbacterium sp. 1154 Isolate Unclassified
108 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
109 2920879853 Kocuria salina CV6 Isolate Unclassified
110 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
111 2928153084 Leifsonia sp. 563 Isolate Unclassified
112 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
113 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
114 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
115 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
116 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
117 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
118 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
119 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
120 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
121 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
122 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
123 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
124 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 63.25
Metatranscriptomes 3.61
Isolates 33.13

Biome Distribution

Category Percentage (%)
Aerial Root 0.6
Bulb 0
Endosphere 3.61
Nodule 0
Rhizoplane 0.6
Rhizosphere 53.01
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006562J51391_1021236 3300003578 Bacteria 11150
2 Ga0006562J51391_1021237 3300003578 Bacteria 4600
3 Ga0006562J51391_1025428 3300003578 Bacteria 5790
4 Ga0065714_10013113 3300005288 Bacteria 2462
5 Ga0070658_10178681 3300005327 Bacteria 1786
6 Ga0068869_100078814 3300005334 Bacteria 2454
7 Ga0070678_100106261 3300005456 Bacteria 2187
8 Ga0068870_10075764 3300005840 Bacteria 1846
9 Ga0081455_10066951 3300005937 Bacteria 2995
10 Ga0075365_10011032 3300006038 Bacteria 5295
11 Ga0105244_10032545 3300009036 Bacteria 2759
12 Ga0105249_10185366 3300009553 Bacteria 2028
13 Ga0157369_10027730 3300013105 Bacteria 6274
14 Ga0197907_10877910 3300020069 Bacteria 2488
15 Ga0206354_11276329 3300020081 Bacteria 2006
16 Ga0209563_100404 3300025230 Bacteria 15438
17 Ga0209677_101020 3300025253 Bacteria 13368
18 Ga0207712_10129247 3300025961 Bacteria 1922
19 Ga0207702_10118072 3300026078 Bacteria 2370
20 Ga0207675_100052407 3300026118 Bacteria 3808
21 Ga0207683_10133880 3300026121 Bacteria 2230
22 Ga0209974_10001654 3300027876 Bacteria 8061
23 Ga0307406_10000134 3300031901 Bacteria 44054
24 Ga0307409_100008914 3300031995 Bacteria 6128
25 Ga0395899_0099912 3300037312 Bacteria 2095
26 Ga0395900_0031457 3300037418 Bacteria 5453
27 Ga0395901_0122270 3300038443 Bacteria 2736
28 Ga0466972_0075733 3300044658 Bacteria 1603
29 Ga0466965_0000001 3300044683 Bacteria 317826
30 Ga0466965_0063892 3300044683 Bacteria 1842
31 Ga0466961_0093854 3300044693 Bacteria 1893
32 Ga0466970_0000020 3300044765 Bacteria 61048
33 Ga0466970_0044599 3300044765 Bacteria 2361
34 Ga0466957_0070403 3300044842 Bacteria 2161
35 Ga0466960_0065192 3300044901 Bacteria 1798
36 Ga0466959_0035554 3300045049 Bacteria 3683
37 Ga0466958_0034963 3300045836 Bacteria 3000
38 Ga0466967_0104707 3300045976 Bacteria 2591
39 Ga0495590_0000623 3300046457 Bacteria 16489
40 Ga0496102_0064186 3300048905 Bacteria 3364
41 Ga0496116_0005090 3300048919 Bacteria 12353
42 Ga0496117_0000063 3300048920 Bacteria 254446
43 Ga0496117_0001880 3300048920 Bacteria 28246
44 Ga0496117_0043563 3300048920 Bacteria 3261
45 Ga0496118_0028832 3300048921 Bacteria 4666
46 Ga0496119_0006865 3300048922 Bacteria 10403
47 Ga0496119_0014719 3300048922 Bacteria 6094
48 Ga0496119_0021773 3300048922 Bacteria 4617
49 Ga0496119_0028123 3300048922 Bacteria 3845
50 Ga0496119_0049039 3300048922 Bacteria 2614
51 Ga0496119_0095861 3300048922 Bacteria 1675
52 Ga0496120_0000717 3300048923 Bacteria 48597
53 Ga0496120_0002055 3300048923 Bacteria 21739
54 Ga0496120_0005909 3300048923 Bacteria 9547
55 Ga0496120_0060384 3300048923 Bacteria 2121
56 Ga0496122_0000059 3300048925 Bacteria 247170
57 Ga0496122_0000515 3300048925 Bacteria 79995
58 Ga0496122_0013089 3300048925 Bacteria 8166
59 Ga0496122_0018717 3300048925 Bacteria 6375
60 Ga0496123_0000013 3300048926 Bacteria 439694
61 Ga0496123_0011622 3300048926 Bacteria 7601
62 Ga0496124_0001451 3300048927 Bacteria 34959
63 Ga0496124_0035510 3300048927 Bacteria 4361
64 Ga0496124_0092729 3300048927 Bacteria 2460
65 Ga0496124_0123907 3300048927 Bacteria 2061
66 Ga0496125_0000046 3300048928 Bacteria 295288
67 Ga0496125_0001957 3300048928 Bacteria 28103
68 Ga0496125_0004725 3300048928 Bacteria 15520
69 Ga0496125_0046810 3300048928 Bacteria 3624
70 Ga0496125_0064529 3300048928 Bacteria 2909
71 Ga0496126_0015008 3300048929 Bacteria 7809
72 Ga0496126_0023502 3300048929 Bacteria 5973
73 Ga0501310_000101 3300049130 Bacteria 8377
74 Ga0501031_0030517 3300049568 Bacteria 3516
75 Ga0501032_0075540 3300049569 Bacteria 2244
76 Ga0501033_0017085 3300049570 Bacteria 5484
77 Ga0501033_0030889 3300049570 Bacteria 4026
78 Ga0501034_0007406 3300049571 Bacteria 11684
79 Ga0501034_0012858 3300049571 Bacteria 8632
80 Ga0501034_0024086 3300049571 Bacteria 6194
81 Ga0501034_0033099 3300049571 Bacteria 5248
82 Ga0501034_0050176 3300049571 Bacteria 4209
83 Ga0501036_0019407 3300049572 Bacteria 5707
84 Ga0501037_0039004 3300049573 Bacteria 3498
85 Ga0501037_0131810 3300049573 Bacteria 1792
86 Ga0501038_0018839 3300049574 Bacteria 6231
87 Ga0501038_0027665 3300049574 Bacteria 5042
88 Ga0501038_0034660 3300049574 Bacteria 4437
89 Ga0501039_0069624 3300049575 Bacteria 2733
90 Ga0501042_0005340 3300049578 Bacteria 8259
91 Ga0501042_0099066 3300049578 Bacteria 2096
92 Ga0501043_0029833 3300049579 Bacteria 4285
93 Ga0501043_0265616 3300049579 Bacteria 1318
94 Ga0501046_0010412 3300049580 Bacteria 7988
95 Ga0501048_0003242 3300049582 Bacteria 12396
96 Ga0501069_0022604 3300049585 Bacteria 3423
97 Ga0501070_0039802 3300049586 Bacteria 3920
98 Ga0501070_0043554 3300049586 Bacteria 3735
99 Ga0501070_0055105 3300049586 Bacteria 3296
100 Ga0501071_0001239 3300049587 Bacteria 14455
101 Ga0501073_0018509 3300049589 Bacteria 5034
102 Ga0501080_0222057 3300049742 Bacteria 1729
103 Ga0501083_0000019 3300049744 Bacteria 147154
104 Ga0501035_0032257 3300049822 Bacteria 4767
105 Ga0501035_0101425 3300049822 Bacteria 2525
106 Ga0501044_0004183 3300049823 Bacteria 16222
107 Ga0501044_0078056 3300049823 Bacteria 3356
108 Ga0501044_0087747 3300049823 Bacteria 3141
109 nmdc:mga0yw44_73308_c1 3300050492 Bacteria 2130
110 Ga0500559_0003280 3300053136 Bacteria 8027
111 Ga0500559_0044981 3300053136 Bacteria 1931
112 2977267112 2977264416 Bacteria 3750737
113 2588108770 2585428157 Bacteria 3018951
114 2643849285 2643221566 Bacteria 3460379
115 2643885932 2643221575 Bacteria 4022601
116 2643995488 2643221597 Bacteria 3347721
117 2644198676 2643221635 Bacteria 2632343
118 2644504433 2643221690 Bacteria 4654705
119 2644524078 2643221694 Bacteria 4392972
120 2644668178 2643221722 Bacteria 4247614
121 2758226519 2757320536 Bacteria 3629334
122 2774379999 2773857758 Bacteria 3592392
123 2774399020 2773857763 Bacteria 4180068
124 2808630799 2808606306 Bacteria 3608896
125 2808885993 2808606368 Bacteria 3174172
126 2809227776 2808606447 Bacteria 3572005
127 2812363090 2811994880 Bacteria 4147780
128 2839986353 2839986021 Bacteria 3685650
129 2844842882 2844841374 Bacteria 3917147
130 2844855921 2844852863 Bacteria 3849151
131 2848552073 2848551377 Bacteria 3720646
132 2852634531 2852632344 Bacteria 3463163
133 2852644867 2852643534 Bacteria 3013378
134 2852646742 2852646457 Bacteria 3408613
135 2857479997 2857479173 Bacteria 2469263
136 2857632920 2857632687 Bacteria 2448521
137 2857710799 2857710386 Bacteria 3186771
138 2857721980 2857720070 Bacteria 3189373
139 2857723198 2857723135 Bacteria 4217853
140 2857730340 2857729791 Bacteria 4040535
141 2857736561 2857733635 Bacteria 3532004
142 2862995225 2862993130 Bacteria 3860849
143 2870803461 2870801768 Bacteria 2710986
144 2870805460 2870804320 Bacteria 2552467
145 2884997363 2884994152 Bacteria 4492978
146 2904511608 2904509784 Bacteria 3520416
147 2908680540 2908678064 Bacteria 3482747
148 2919058855 2919055335 Bacteria 3875751
149 2919071904 2919069694 Bacteria 3622919
150 2919524965 2919523602 Bacteria 3788128
151 2920880425 2920879853 Bacteria 4216831
152 2928123555 2928121344 Bacteria 3972376
153 2928156837 2928153084 Bacteria 4020257
154 2939662241 2939660829 Bacteria 3784848
155 2945971172 2945968032 Bacteria 4111363
156 2946034404 2946033335 Bacteria 3835514
157 2964328958 2964326757 Bacteria 3290868
158 2974297569 2974294766 Bacteria 3767688
159 2974326195 2974324384 Bacteria 3750535
160 2977231802 2977228692 Bacteria 3450105
161 2977237160 2977236895 Bacteria 3569373
162 2984545051 2984542743 Bacteria 3569378
163 8016257165 8016254467 Bacteria 3797036
164 8045831436 8045830549 Bacteria 4444727
165 8046353360 8046352972 Bacteria 3613806
166 8056039800 8056037122 Bacteria 3854319
167 Ga0006562J51391_1021236
168 Ga0006562J51391_1021237
169 Ga0006562J51391_1025428
170 Ga0065714_10013113
171 Ga0070658_10178681
172 Ga0068869_100078814
173 Ga0070678_100106261
174 Ga0068870_10075764
175 Ga0081455_10066951
176 Ga0075365_10011032
177 Ga0105244_10032545
178 Ga0105249_10185366
179 Ga0157369_10027730
180 Ga0197907_10877910
181 Ga0206354_11276329
182 Ga0209563_100404
183 Ga0209677_101020
184 Ga0207712_10129247
185 Ga0207702_10118072
186 Ga0207675_100052407
187 Ga0207683_10133880
188 Ga0209974_10001654
189 Ga0307406_10000134
190 Ga0307409_100008914
191 Ga0395899_0099912
192 Ga0395900_0031457
193 Ga0395901_0122270
194 Ga0466972_0075733
195 Ga0466965_0000001
196 Ga0466965_0063892
197 Ga0466961_0093854
198 Ga0466970_0000020
199 Ga0466970_0044599
200 Ga0466957_0070403
201 Ga0466960_0065192
202 Ga0466959_0035554
203 Ga0466958_0034963
204 Ga0466967_0104707
205 Ga0495590_0000623
206 Ga0496102_0064186
207 Ga0496116_0005090
208 Ga0496117_0000063
209 Ga0496117_0001880
210 Ga0496117_0043563
211 Ga0496118_0028832
212 Ga0496119_0006865
213 Ga0496119_0014719
214 Ga0496119_0021773
215 Ga0496119_0028123
216 Ga0496119_0049039
217 Ga0496119_0095861
218 Ga0496120_0000717
219 Ga0496120_0002055
220 Ga0496120_0005909
221 Ga0496120_0060384
222 Ga0496122_0000059
223 Ga0496122_0000515
224 Ga0496122_0013089
225 Ga0496122_0018717
226 Ga0496123_0000013
227 Ga0496123_0011622
228 Ga0496124_0001451
229 Ga0496124_0035510
230 Ga0496124_0092729
231 Ga0496124_0123907
232 Ga0496125_0000046
233 Ga0496125_0001957
234 Ga0496125_0004725
235 Ga0496125_0046810
236 Ga0496125_0064529
237 Ga0496126_0015008
238 Ga0496126_0023502
239 Ga0501310_000101
240 Ga0501031_0030517
241 Ga0501032_0075540
242 Ga0501033_0017085
243 Ga0501033_0030889
244 Ga0501034_0007406
245 Ga0501034_0012858
246 Ga0501034_0024086
247 Ga0501034_0033099
248 Ga0501034_0050176
249 Ga0501036_0019407
250 Ga0501037_0039004
251 Ga0501037_0131810
252 Ga0501038_0018839
253 Ga0501038_0027665
254 Ga0501038_0034660
255 Ga0501039_0069624
256 Ga0501042_0005340
257 Ga0501042_0099066
258 Ga0501043_0029833
259 Ga0501043_0265616
260 Ga0501046_0010412
261 Ga0501048_0003242
262 Ga0501069_0022604
263 Ga0501070_0039802
264 Ga0501070_0043554
265 Ga0501070_0055105
266 Ga0501071_0001239
267 Ga0501073_0018509
268 Ga0501080_0222057
269 Ga0501083_0000019
270 Ga0501035_0032257
271 Ga0501035_0101425
272 Ga0501044_0004183
273 Ga0501044_0078056
274 Ga0501044_0087747
275 nmdc:mga0yw44_73308_c1
276 Ga0500559_0003280
277 Ga0500559_0044981
278 2977267112
279 2588108770
280 2643849285
281 2643885932
282 2643995488
283 2644198676
284 2644504433
285 2644524078
286 2644668178
287 2758226519
288 2774379999
289 2774399020
290 2808630799
291 2808885993
292 2809227776
293 2812363090
294 2839986353
295 2844842882
296 2844855921
297 2848552073
298 2852634531
299 2852644867
300 2852646742
301 2857479997
302 2857632920
303 2857710799
304 2857721980
305 2857723198
306 2857730340
307 2857736561
308 2862995225
309 2870803461
310 2870805460
311 2884997363
312 2904511608
313 2908680540
314 2919058855
315 2919071904
316 2919524965
317 2920880425
318 2928123555
319 2928156837
320 2939662241
321 2945971172
322 2946034404
323 2964328958
324 2974297569
325 2974326195
326 2977231802
327 2977237160
328 2984545051
329 8016257165
330 8045831436
331 8046353360
332 8056039800

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01571

GCV_T

Aminomethyltransferase folate-binding domain

9

145

0.94

PF01571

GCV_T

Aminomethyltransferase folate-binding domain

204

356

0.94

PF08669

GCV_T_C

Glycine cleavage T-protein C-terminal barrel domain

379

456

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
1woo-assembly1.cif.gz_A crystal structure of t-protein of the glycine cleavage system 0.9675 14 391
1woo-assembly1.cif.gz_A crystal structure of t-protein of the glycine cleavage system 0.9492 14 391
3a8k-assembly2.cif.gz_B crystal structure of etd97n-ehred complex 0.9209 14 392
1yx2-assembly1.cif.gz_A crystal structure of the probable aminomethyltransferase from bacillus subtilis 0.9199 14 389
3a8i-assembly3.cif.gz_C crystal structure of et-ehred-5-ch3-thf complex 0.9157 14 392
ID Description Score Start End Superfamily
3girA02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Aminomethyltransferase beta-barrel domains 0.9723 65 147 3.30.70.1400
1wosA02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Aminomethyltransferase beta-barrel domains 0.9652 62 147 3.30.70.1400
1v5vB03 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Aminomethyltransferase beta-barrel domains 0.9521 307 386 2.40.30.110
1wosA02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Aminomethyltransferase beta-barrel domains 0.944 62 147 3.30.70.1400
af_Q22968_313_395_2.40.30.110 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Aminomethyltransferase beta-barrel domains 0.9429 306 389 2.40.30.110
ID Description Score Start End GO Terms
AF-A0A6B3FCQ5-F1-model_v4 Glycine cleavage system protein T 0.992 60 148 GO:0005829
AF-A0A497EXD1-F1-model_v4 Glycine cleavage system aminomethyltransferase GcvT 0.9856 30 168 GO:0008168
GO:0032259
AF-A0A6B3FCQ5-F1-model_v4 Glycine cleavage system protein T 0.9811 60 148 GO:0005829
AF-A0A2V7HRR6-F1-model_v4 Glycine cleavage system aminomethyltransferase GcvT 0.9799 24 161 GO:0005829
GO:0008168
GO:0032259
AF-A0A1E4M8P7-F1-model_v4 Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage system T protein) 0.9793 14 393 GO:0004047
GO:0005829
GO:0005960
GO:0008483
GO:0019464

Map