F249456

General Info

Members Datasets Scaffolds Average Seq Length
166 112 332 504

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2919138771|2919141234
Length 529
Sequence PSQDLDASEFAVEDNSPSPATPPPLHGAALFSAAFALALGTFMQVLDSTIANVALNTISGNLGEASSTATWVITAFAVANGVTVPLTGWLMRRFGVVNTFIASVALFTLASFLCGIAWSLPSLIVFRLLQGAVSGPMIPGSQALLLAIFPPEKRTVGLSIWSMTALVGPVLGPILGGYISDNYHWGWIFLINVPVGFITVGVLMARMRAYNTPPVKLPFDWGGVALLILWVGSLQVVLDLGKDEDWFNSTFICALSVVAVLGFFAWLIWELTEEHPAVDLTLFKSRNFAIGTLCFCLGYGFFFASNLLMPLWLQTQQGYTATWAGLVSAPAGMVAFLLAPLVARAAGTLDLRYVATYALLAFAVSYMMRTGFAPDTDLWHFVLPSIVQGTAMGTFFMSMTTLSFDRLGPHRIPSATGISNFARITGGAFAASITTTFWDRREVLHQSRLAEAANPGNPAYVQAMDHLQTIGMSKAQATGALTGQMVNQSYLLSSLDIFWFAGMGCIAMLALLWCTRKPAPPQGGAVVVD

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
16 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
25 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
26 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
29 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
32 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
33 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
34 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
35 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
54 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
55 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
58 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
59 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
60 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
61 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
63 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
64 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
65 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
66 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
67 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
68 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
69 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
70 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
71 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
72 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
73 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
74 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
75 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
76 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
77 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
78 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
79 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
80 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
81 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
82 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
83 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
84 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
85 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
91 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
92 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
93 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
94 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
95 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
96 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
99 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
100 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
101 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
102 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
103 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
104 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
105 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
106 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
107 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
108 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
109 2919138771 Novosphingobium sp. 1748 Isolate Rhizosphere
110 2739367756 Asticcacaulis sp. CF398 Isolate Unclassified
111 2846037992 Chromobacterium alticapitis MWU14-2602 Isolate Rhizosphere
112 8057101203 Sphingomonas lycopersici MMSM20 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.39
Metatranscriptomes 1.2
Isolates 2.41

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.61
Nodule 0
Rhizoplane 2.41
Rhizosphere 83.73
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10222567 3300003323 Bacteria 5677
2 Ga0070658_10183659 3300005327 Bacteria 1760
3 Ga0070670_100050901 3300005331 Bacteria 3558
4 Ga0070680_100003311 3300005336 Bacteria 12019
5 Ga0070660_100078421 3300005339 Bacteria 2590
6 Ga0070668_100033583 3300005347 Bacteria 3908
7 Ga0070671_100117666 3300005355 Bacteria 2235
8 Ga0070659_100000056 3300005366 Bacteria 88478
9 Ga0070659_100002043 3300005366 Bacteria 14431
10 Ga0070667_100019781 3300005367 Bacteria 5586
11 Ga0070681_10002800 3300005458 Bacteria 16108
12 Ga0070681_10003072 3300005458 Bacteria 15490
13 Ga0070679_100013379 3300005530 Bacteria 7857
14 Ga0068853_100003474 3300005539 Bacteria 12052
15 Ga0070665_100000015 3300005548 Bacteria 462744
16 Ga0070665_100018084 3300005548 Bacteria 7075
17 Ga0068855_100007318 3300005563 Bacteria 13375
18 Ga0068855_100023184 3300005563 Bacteria 7436
19 Ga0068855_100200031 3300005563 Bacteria 2250
20 Ga0068852_100072969 3300005616 Bacteria 3018
21 Ga0068858_100023356 3300005842 Bacteria 5761
22 Ga0068860_100000481 3300005843 Bacteria 49480
23 Ga0075428_100007822 3300006844 Bacteria 11849
24 Ga0075431_100000070 3300006847 Bacteria 59538
25 Ga0075429_100003436 3300006880 Bacteria 13516
26 Ga0099795_10000070 3300007788 Bacteria 18141
27 Ga0105240_10000305 3300009093 Bacteria 94979
28 Ga0105240_10015943 3300009093 Bacteria 10192
29 Ga0105240_10025811 3300009093 Bacteria 7716
30 Ga0105240_10033758 3300009093 Bacteria 6607
31 Ga0105240_10035245 3300009093 Bacteria 6450
32 Ga0105240_10045627 3300009093 Bacteria 5558
33 Ga0111539_10000846 3300009094 Bacteria 39900
34 Ga0111539_10003956 3300009094 Bacteria 19465
35 Ga0105242_10046556 3300009176 Bacteria 3519
36 Ga0105248_10000001 3300009177 Bacteria 1881304
37 Ga0105248_10185676 3300009177 Bacteria 2343
38 Ga0105237_10030410 3300009545 Bacteria 5485
39 Ga0105237_10156278 3300009545 Bacteria 2278
40 Ga0105238_10130449 3300009551 Bacteria 2492
41 Ga0105238_10146019 3300009551 Bacteria 2342
42 Ga0105249_10247184 3300009553 Bacteria 1766
43 Ga0099796_10001721 3300010159 Bacteria 4546
44 Ga0105239_10000037 3300010375 Bacteria 206779
45 Ga0105239_10320276 3300010375 Bacteria 1748
46 Ga0157370_10079694 3300013104 Bacteria 3084
47 Ga0157374_10108099 3300013296 Bacteria 2673
48 Ga0213875_10002724 3300021388 Bacteria 10431
49 Ga0209233_1007011 3300025261 Bacteria 3599
50 Ga0207680_10004543 3300025903 Bacteria 6587
51 Ga0207705_10000362 3300025909 Bacteria 41196
52 Ga0207707_10004497 3300025912 Bacteria 12267
53 Ga0207695_10000657 3300025913 Bacteria 68406
54 Ga0207695_10000695 3300025913 Bacteria 65865
55 Ga0207695_10003989 3300025913 Bacteria 20367
56 Ga0207695_10040950 3300025913 Bacteria 4961
57 Ga0207671_10002450 3300025914 Bacteria 19861
58 Ga0207660_10000670 3300025917 Bacteria 22876
59 Ga0207657_10000944 3300025919 Bacteria 30787
60 Ga0207649_10043956 3300025920 Bacteria 2734
61 Ga0207652_10001877 3300025921 Bacteria 18242
62 Ga0207652_10067759 3300025921 Bacteria 3095
63 Ga0207694_10061341 3300025924 Bacteria 2926
64 Ga0207690_10000104 3300025932 Bacteria 68527
65 Ga0207690_10003231 3300025932 Bacteria 9786
66 Ga0207711_10000001 3300025941 Bacteria 1325674
67 Ga0207711_10145568 3300025941 Bacteria 2135
68 Ga0207667_10008664 3300025949 Bacteria 12059
69 Ga0207667_10013097 3300025949 Bacteria 9518
70 Ga0207667_10083343 3300025949 Bacteria 3311
71 Ga0207668_10049391 3300025972 Bacteria 2892
72 Ga0207658_10015762 3300025986 Bacteria 5189
73 Ga0207703_10016156 3300026035 Bacteria 5818
74 Ga0207639_10060374 3300026041 Bacteria 2925
75 Ga0207639_10089114 3300026041 Bacteria 2464
76 Ga0207676_10059728 3300026095 Bacteria 3012
77 Ga0207428_10008294 3300027907 Bacteria 9391
78 Ga0207428_10015887 3300027907 Bacteria 6494
79 Ga0265354_1002039 3300028016 Bacteria 2635
80 Ga0268266_10000005 3300028379 Bacteria 1448194
81 Ga0268266_10023537 3300028379 Bacteria 5242
82 Ga0268264_10000025 3300028381 Bacteria 468619
83 Ga0265334_10000441 3300028573 Bacteria 21780
84 Ga0265318_10000056 3300028577 Bacteria 113159
85 Ga0307517_10004846 3300028786 Bacteria 20520
86 Ga0265338_10007290 3300028800 Bacteria 13799
87 Ga0265338_10008096 3300028800 Bacteria 12843
88 Ga0265770_1000821 3300030878 Bacteria 4301
89 Ga0265760_10015215 3300031090 Bacteria 2205
90 Ga0265328_10001744 3300031239 Bacteria 9953
91 Ga0265327_10001787 3300031251 Bacteria 25269
92 Ga0265314_10041909 3300031711 Bacteria 3271
93 Ga0316576_10034628 3300031727 Bacteria 3600
94 Ga0316576_10148432 3300031727 Bacteria 1767
95 Ga0307516_10000067 3300031730 Bacteria 111575
96 Ga0307510_10004057 3300033180 Bacteria 17176
97 Ga0316574_0001748 3300035398 Bacteria 10518
98 Ga0395905_0086977 3300037471 Bacteria 2930
99 Ga0436364_1455316 3300037853 Bacteria 25171
100 Ga0439448_0018372 3300042005 Bacteria 2142
101 Ga0451577_0021124 3300042876 Bacteria 5961
102 Ga0466966_0031448 3300044684 Bacteria 3442
103 Ga0495668_0005486 3300046616 Bacteria 8582
104 Ga0495668_0012571 3300046616 Bacteria 5020
105 Ga0495672_0001096 3300047320 Bacteria 27499
106 Ga0495672_0091606 3300047320 Bacteria 1668
107 Ga0496102_0067387 3300048905 Bacteria 3283
108 Ga0496115_0002386 3300048918 Bacteria 13467
109 Ga0496115_0002726 3300048918 Bacteria 12689
110 Ga0496115_0025499 3300048918 Bacteria 4604
111 Ga0496117_0000067 3300048920 Bacteria 249348
112 Ga0496118_0000021 3300048921 Bacteria 444988
113 Ga0496118_0007472 3300048921 Bacteria 11566
114 Ga0496119_0094874 3300048922 Bacteria 1687
115 Ga0496121_0000066 3300048924 Bacteria 267065
116 Ga0496121_0035461 3300048924 Bacteria 4471
117 Ga0496124_0024425 3300048927 Bacteria 5494
118 Ga0496126_0002819 3300048929 Bacteria 22792
119 Ga0496126_0002845 3300048929 Bacteria 22641
120 Ga0496126_0004559 3300048929 Bacteria 16459
121 Ga0501031_0004153 3300049568 Bacteria 9353
122 Ga0501034_0033809 3300049571 Bacteria 5183
123 Ga0501034_0134946 3300049571 Bacteria 2449
124 Ga0501034_0163676 3300049571 Bacteria 2194
125 Ga0501036_0161585 3300049572 Bacteria 1888
126 Ga0501047_0001710 3300049581 Bacteria 21340
127 Ga0501047_0004116 3300049581 Bacteria 13687
128 Ga0501047_0038025 3300049581 Bacteria 4655
129 Ga0501047_0068696 3300049581 Bacteria 3413
130 Ga0501047_0093400 3300049581 Bacteria 2887
131 Ga0501047_0181872 3300049581 Bacteria 1969
132 Ga0501048_0102655 3300049582 Bacteria 2018
133 Ga0501067_0019621 3300049583 Bacteria 3742
134 Ga0501067_0060000 3300049583 Bacteria 2105
135 Ga0501069_0030500 3300049585 Bacteria 2961
136 Ga0501073_0003416 3300049589 Bacteria 11944
137 Ga0501074_0029468 3300049590 Bacteria 3976
138 Ga0501074_0140209 3300049590 Bacteria 1729
139 Ga0501079_0043076 3300049741 Bacteria 3484
140 Ga0501080_0024288 3300049742 Bacteria 5620
141 Ga0501080_0031492 3300049742 Bacteria 4942
142 Ga0501080_0036639 3300049742 Bacteria 4579
143 Ga0501035_0019910 3300049822 Bacteria 6164
144 Ga0501035_0032971 3300049822 Bacteria 4711
145 Ga0501035_0062102 3300049822 Bacteria 3324
146 Ga0501035_0143225 3300049822 Bacteria 2077
147 Ga0501035_0166752 3300049822 Bacteria 1904
148 Ga0501044_0003053 3300049823 Bacteria 18939
149 Ga0501044_0024800 3300049823 Bacteria 6362
150 nmdc:mga05p37_33393_c1 3300050507 Bacteria 6302
151 nmdc:mga09592_1417_c1 3300050508 Bacteria 19231
152 nmdc:mga06r32_127_c1 3300050510 Bacteria 55298
153 nmdc:mga08y16_245_c1 3300050511 Bacteria 48774
154 nmdc:mga08y16_778_c1 3300050511 Bacteria 30441
155 Ga0500592_000293 3300053116 Bacteria 8758
156 Ga0500568_0016799 3300053139 Bacteria 3243
157 Ga0500588_0002152 3300053146 Bacteria 3943
158 Ga0500619_000993 3300053154 Bacteria 4888
159 Ga0500622_0000944 3300053156 Bacteria 24711
160 Ga0501084_0007152 3300054114 Bacteria 9194
161 Ga0501082_0004159 3300060353 Bacteria 12648
162 Ga0501082_0029728 3300060353 Bacteria 4708
163 2919141234 2919138771 Bacteria 5281312
164 2739790223 2739367756 Bacteria 4553612
165 2846042106 2846037992 Bacteria 4526407
166 8057104243 8057101203 Bacteria 5034064
167 rootH1_10222567
168 Ga0070658_10183659
169 Ga0070670_100050901
170 Ga0070680_100003311
171 Ga0070660_100078421
172 Ga0070668_100033583
173 Ga0070671_100117666
174 Ga0070659_100000056
175 Ga0070659_100002043
176 Ga0070667_100019781
177 Ga0070681_10002800
178 Ga0070681_10003072
179 Ga0070679_100013379
180 Ga0068853_100003474
181 Ga0070665_100000015
182 Ga0070665_100018084
183 Ga0068855_100007318
184 Ga0068855_100023184
185 Ga0068855_100200031
186 Ga0068852_100072969
187 Ga0068858_100023356
188 Ga0068860_100000481
189 Ga0075428_100007822
190 Ga0075431_100000070
191 Ga0075429_100003436
192 Ga0099795_10000070
193 Ga0105240_10000305
194 Ga0105240_10015943
195 Ga0105240_10025811
196 Ga0105240_10033758
197 Ga0105240_10035245
198 Ga0105240_10045627
199 Ga0111539_10000846
200 Ga0111539_10003956
201 Ga0105242_10046556
202 Ga0105248_10000001
203 Ga0105248_10185676
204 Ga0105237_10030410
205 Ga0105237_10156278
206 Ga0105238_10130449
207 Ga0105238_10146019
208 Ga0105249_10247184
209 Ga0099796_10001721
210 Ga0105239_10000037
211 Ga0105239_10320276
212 Ga0157370_10079694
213 Ga0157374_10108099
214 Ga0213875_10002724
215 Ga0209233_1007011
216 Ga0207680_10004543
217 Ga0207705_10000362
218 Ga0207707_10004497
219 Ga0207695_10000657
220 Ga0207695_10000695
221 Ga0207695_10003989
222 Ga0207695_10040950
223 Ga0207671_10002450
224 Ga0207660_10000670
225 Ga0207657_10000944
226 Ga0207649_10043956
227 Ga0207652_10001877
228 Ga0207652_10067759
229 Ga0207694_10061341
230 Ga0207690_10000104
231 Ga0207690_10003231
232 Ga0207711_10000001
233 Ga0207711_10145568
234 Ga0207667_10008664
235 Ga0207667_10013097
236 Ga0207667_10083343
237 Ga0207668_10049391
238 Ga0207658_10015762
239 Ga0207703_10016156
240 Ga0207639_10060374
241 Ga0207639_10089114
242 Ga0207676_10059728
243 Ga0207428_10008294
244 Ga0207428_10015887
245 Ga0265354_1002039
246 Ga0268266_10000005
247 Ga0268266_10023537
248 Ga0268264_10000025
249 Ga0265334_10000441
250 Ga0265318_10000056
251 Ga0307517_10004846
252 Ga0265338_10007290
253 Ga0265338_10008096
254 Ga0265770_1000821
255 Ga0265760_10015215
256 Ga0265328_10001744
257 Ga0265327_10001787
258 Ga0265314_10041909
259 Ga0316576_10034628
260 Ga0316576_10148432
261 Ga0307516_10000067
262 Ga0307510_10004057
263 Ga0316574_0001748
264 Ga0395905_0086977
265 Ga0436364_1455316
266 Ga0439448_0018372
267 Ga0451577_0021124
268 Ga0466966_0031448
269 Ga0495668_0005486
270 Ga0495668_0012571
271 Ga0495672_0001096
272 Ga0495672_0091606
273 Ga0496102_0067387
274 Ga0496115_0002386
275 Ga0496115_0002726
276 Ga0496115_0025499
277 Ga0496117_0000067
278 Ga0496118_0000021
279 Ga0496118_0007472
280 Ga0496119_0094874
281 Ga0496121_0000066
282 Ga0496121_0035461
283 Ga0496124_0024425
284 Ga0496126_0002819
285 Ga0496126_0002845
286 Ga0496126_0004559
287 Ga0501031_0004153
288 Ga0501034_0033809
289 Ga0501034_0134946
290 Ga0501034_0163676
291 Ga0501036_0161585
292 Ga0501047_0001710
293 Ga0501047_0004116
294 Ga0501047_0038025
295 Ga0501047_0068696
296 Ga0501047_0093400
297 Ga0501047_0181872
298 Ga0501048_0102655
299 Ga0501067_0019621
300 Ga0501067_0060000
301 Ga0501069_0030500
302 Ga0501073_0003416
303 Ga0501074_0029468
304 Ga0501074_0140209
305 Ga0501079_0043076
306 Ga0501080_0024288
307 Ga0501080_0031492
308 Ga0501080_0036639
309 Ga0501035_0019910
310 Ga0501035_0032971
311 Ga0501035_0062102
312 Ga0501035_0143225
313 Ga0501035_0166752
314 Ga0501044_0003053
315 Ga0501044_0024800
316 nmdc:mga05p37_33393_c1
317 nmdc:mga09592_1417_c1
318 nmdc:mga06r32_127_c1
319 nmdc:mga08y16_245_c1
320 nmdc:mga08y16_778_c1
321 Ga0500592_000293
322 Ga0500568_0016799
323 Ga0500588_0002152
324 Ga0500619_000993
325 Ga0500622_0000944
326 Ga0501084_0007152
327 Ga0501082_0004159
328 Ga0501082_0029728
329 2919141234
330 2739790223
331 2846042106
332 8057104243

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07690

MFS_1

Major Facilitator Superfamily

37

431

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
7d5p-assembly1.cif.gz_A structure of norc transporter in an outward-open conformation in complex with a single-chain indian camelid antibody 0.8485 3 464
7d5p-assembly2.cif.gz_B structure of norc transporter in an outward-open conformation in complex with a single-chain indian camelid antibody 0.8464 4 464
7y58-assembly1.cif.gz_A cryoem structure of qaca (d411n), an antibacterial efflux transporter from staphylococcus aureus 0.8444 5 464
7d5q-assembly2.cif.gz_B structure of norc transporter (k398a mutant) in an outward-open conformation in complex with a single-chain indian camelid antibody 0.8441 4 462
7d5p-assembly1.cif.gz_A structure of norc transporter in an outward-open conformation in complex with a single-chain indian camelid antibody 0.8427 3 464
ID Description Score Start End Superfamily
af_P0AEJ0_15_220_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9643 5 208 1.20.1250.20
af_P0AEJ0_15_220_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9507 5 208 1.20.1250.20
af_P9WG87_21_208_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9407 7 193 1.20.1250.20
af_P9WJX3_18_194_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9381 4 174 1.20.1250.20
af_Q2FVL1_1_184_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9353 24 206 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A537NMT5-F1-model_v4 MFS transporter 0.9608 4 154 GO:0005886
GO:0022857
AF-A0A3S1U0X0-F1-model_v4 MFS transporter 0.9512 10 147 GO:0005886
GO:0022857
AF-A0A7H4MK84-F1-model_v4 Drug resistance MFS transporter drug:H+ antiporter-1 (DHA2) family 0.9503 3 133 GO:0005886
GO:0022857
AF-A0A2K2TJ46-F1-model_v4 MFS transporter 0.9464 2 139 GO:0005886
GO:0022857
AF-A0A6B2T9L3-F1-model_v4 MFS transporter 0.9391 3 181 GO:0016020
GO:0022857
GO:0046677

Map