F249282

General Info

Members Datasets Scaffolds Average Seq Length
166 112 332 477

Family's Representative Sequence

Representative Sequence 3300049582|Ga0501048_0052238|Ga0501048_0052238_506_2362
Length 547
Sequence MSAETLERSVLEGKDREQLLAIAQALGVKGVSRAKKGDLIDRILEQTGGAPNGAPDDAVVARPVDEPDGADAAQANGPAPSDNGAAASTAGDRGDDVPPDTRQRVRDDRPGTIPSTEGGEVLVGDDGEPLAEWEIELRRQGVSTEVTVGEPNGAADGIRRSRPNSATSTRDDLDADGEGPQGQDRYADERGPEPSQEPVKVAGYLDLRDYGLRKGDYVTGISRAASRNEKSNPALLEVHTVNGQDPEKARNRPRFEDLTPLFPDERLRLENGSDPLNMTARIIDLVAPIGKGQRGIIVSPPKAGKTFVMKTIATSIERNNPEVKLIVLLIDERPEEVTDFRRTVQGEVIASTFDRPSDEHTHMAELVIERAKRMVEQGDDVVIILDGITRLSRAYNLAAPATGRIMSGGIDAGALYPPKKFFGAARNIEEGGSLTILATALVETNSRMDDAIFEEFKGTGNMELRLDRKLAERRIYPAIDVDASSTRHEELLFDRKQLQMVWKLRRVLSGLAADGNAAPGLELLIDRLKTFRTNDEFLSEIAKQPSM

Samples

Sample ID Description Type Environment
1 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
2 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
3 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
4 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
5 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
6 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
7 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
8 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
9 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
10 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
11 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
12 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
13 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
14 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
15 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
16 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
17 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
18 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
19 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
20 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
21 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
32 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
33 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
34 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
35 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
36 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
37 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
38 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
39 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
40 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
41 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
42 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
43 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
44 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
45 3300034817 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 Metagenome Rhizosphere
46 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
47 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
48 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
49 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
50 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
51 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
52 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
53 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
54 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
55 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
56 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
57 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
58 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
59 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
60 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
61 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
62 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
63 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
64 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
65 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
66 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
67 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
68 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
69 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
70 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
71 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
72 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
73 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
74 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
75 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
76 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
77 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
89 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
90 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
91 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
92 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
93 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
94 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
95 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
96 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
99 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
100 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
101 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
104 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
105 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
106 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
107 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
108 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
109 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
110 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
111 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
112 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.4
Metatranscriptomes 0.6
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.02
Nodule 0
Rhizoplane 10.24
Rhizosphere 83.13
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501048_0052238 3300049582 Bacteria 2908
2 Ga0070687_100046585 3300005343 Bacteria 2220
3 Ga0070671_100001319 3300005355 Bacteria 18648
4 Ga0070681_10120742 3300005458 Bacteria 2555
5 Ga0068866_10034064 3300005718 Bacteria 2477
6 Ga0068858_100011742 3300005842 Bacteria 8262
7 Ga0068860_100013420 3300005843 Bacteria 8035
8 Ga0081455_10012306 3300005937 Bacteria 8537
9 Ga0081455_10023889 3300005937 Bacteria 5678
10 Ga0081538_10000319 3300005981 Bacteria 54989
11 Ga0081538_10063024 3300005981 Bacteria 2108
12 Ga0075365_10025878 3300006038 Bacteria 3718
13 Ga0075365_10037609 3300006038 Bacteria 3143
14 Ga0075428_100009539 3300006844 Bacteria 10779
15 Ga0075428_100046251 3300006844 Bacteria 4780
16 Ga0075430_100003238 3300006846 Bacteria 13644
17 Ga0075430_100010795 3300006846 Bacteria 7738
18 Ga0075431_100001983 3300006847 Bacteria 19532
19 Ga0075431_100017396 3300006847 Bacteria 7305
20 Ga0075431_100024884 3300006847 Bacteria 6139
21 Ga0075429_100001075 3300006880 Bacteria 21904
22 Ga0075429_100013710 3300006880 Bacteria 7027
23 Ga0075429_100035063 3300006880 Bacteria 4361
24 Ga0075429_100153483 3300006880 Bacteria 2016
25 Ga0105245_10003365 3300009098 Bacteria 14328
26 Ga0105245_10009099 3300009098 Bacteria 8656
27 Ga0105245_10025320 3300009098 Bacteria 5218
28 Ga0114129_10003335 3300009147 Bacteria 22558
29 Ga0114129_10052615 3300009147 Bacteria 5715
30 Ga0105243_10017002 3300009148 Bacteria 5499
31 Ga0105242_10070588 3300009176 Bacteria 2896
32 Ga0157378_10001154 3300013297 Bacteria 24017
33 Ga0224712_10011000 3300022467 Bacteria 2789
34 Ga0207684_10048014 3300025910 Bacteria 3621
35 Ga0207662_10072748 3300025918 Bacteria 2084
36 Ga0207687_10003590 3300025927 Bacteria 10446
37 Ga0207687_10005458 3300025927 Bacteria 8409
38 Ga0207644_10150809 3300025931 Bacteria 1798
39 Ga0207709_10055526 3300025935 Bacteria 2447
40 Ga0207711_10098210 3300025941 Bacteria 2587
41 Ga0207712_10036737 3300025961 Bacteria 3338
42 Ga0207668_10051286 3300025972 Bacteria 2849
43 Ga0207703_10034493 3300026035 Bacteria 4016
44 Ga0207648_10012762 3300026089 Bacteria 7851
45 Ga0265338_10016077 3300028800 Bacteria 8168
46 Ga0265325_10002145 3300031241 Bacteria 13452
47 Ga0265339_10010431 3300031249 Bacteria 5771
48 Ga0265327_10000106 3300031251 Bacteria 184297
49 Ga0265327_10003087 3300031251 Bacteria 16433
50 Ga0265327_10011173 3300031251 Bacteria 6221
51 Ga0265313_10001701 3300031595 Bacteria 20283
52 Ga0316576_10005290 3300031727 Bacteria 7863
53 Ga0316576_10012745 3300031727 Bacteria 5562
54 Ga0316576_10040406 3300031727 Bacteria 3353
55 Ga0316576_10045063 3300031727 Bacteria 3188
56 Ga0316576_10054985 3300031727 Bacteria 2904
57 Ga0316578_10008442 3300031728 Bacteria 5242
58 Ga0316577_10021858 3300031733 Bacteria 3550
59 Ga0307407_10012381 3300031903 Bacteria 4097
60 Ga0307409_100031392 3300031995 Bacteria 3833
61 Ga0307416_100015303 3300032002 Bacteria 5295
62 Ga0307414_10010575 3300032004 Bacteria 5365
63 Ga0307411_10012219 3300032005 Bacteria 4674
64 Ga0307411_10025020 3300032005 Bacteria 3569
65 Ga0373930_0001042 3300034816 Bacteria 3993
66 Ga0373948_0005976 3300034817 Bacteria 1994
67 Ga0373928_0004811 3300035084 Bacteria 2574
68 Ga0373932_0003829 3300035112 Bacteria 3596
69 Ga0316574_0017826 3300035398 Bacteria 4163
70 Ga0316574_0026459 3300035398 Bacteria 3489
71 Ga0316574_0041710 3300035398 Bacteria 2830
72 Ga0373931_0000010 3300035691 Bacteria 334069
73 Ga0373931_0000021 3300035691 Bacteria 142586
74 Ga0373937_0030762 3300036401 Bacteria 4863
75 Ga0316582_0051797 3300036647 Bacteria 2606
76 Ga0316584_0010447 3300036712 Bacteria 6488
77 Ga0436365_0376202 3300039437 Bacteria 8775
78 Ga0439440_0002414 3300042993 Bacteria 3534
79 Ga0453684_0031795 3300044712 Bacteria 7403
80 Ga0495651_0023450 3300046462 Bacteria 4797
81 Ga0495653_0040710 3300046463 Bacteria 3630
82 Ga0495582_0044296 3300046473 Bacteria 2451
83 Ga0495608_0052164 3300046511 Bacteria 2708
84 Ga0495630_0062765 3300046517 Bacteria 2791
85 Ga0495657_0025752 3300046675 Bacteria 4174
86 Ga0495613_0000357 3300046689 Bacteria 40386
87 Ga0495672_0002623 3300047320 Bacteria 16242
88 Ga0495680_0011475 3300047322 Bacteria 7840
89 Ga0495680_0064492 3300047322 Bacteria 2809
90 Ga0496100_0012547 3300048903 Bacteria 4861
91 Ga0496101_0037341 3300048904 Bacteria 3446
92 Ga0496102_0083580 3300048905 Bacteria 2946
93 Ga0496104_0001408 3300048907 Bacteria 20848
94 Ga0496104_0034272 3300048907 Bacteria 4732
95 Ga0496104_0042785 3300048907 Bacteria 4253
96 Ga0496105_0044537 3300048908 Bacteria 3660
97 Ga0496108_0064126 3300048911 Bacteria 3095
98 Ga0496109_0006787 3300048912 Bacteria 9645
99 Ga0496110_0022780 3300048913 Bacteria 5322
100 Ga0496111_0021010 3300048914 Bacteria 4552
101 Ga0496111_0089284 3300048914 Bacteria 2257
102 Ga0496112_0003300 3300048915 Bacteria 13320
103 Ga0496112_0069022 3300048915 Bacteria 3491
104 Ga0496113_0002821 3300048916 Bacteria 10215
105 Ga0496114_0003167 3300048917 Bacteria 12618
106 Ga0496114_0007377 3300048917 Bacteria 8687
107 Ga0501031_0042648 3300049568 Bacteria 2961
108 Ga0501032_0153304 3300049569 Bacteria 1515
109 Ga0501033_0008567 3300049570 Bacteria 7912
110 Ga0501033_0012943 3300049570 Bacteria 6363
111 Ga0501034_0099233 3300049571 Bacteria 2907
112 Ga0501036_0010457 3300049572 Bacteria 7665
113 Ga0501036_0111436 3300049572 Bacteria 2312
114 Ga0501037_0000545 3300049573 Bacteria 30042
115 Ga0501038_0037566 3300049574 Bacteria 4246
116 Ga0501039_0016718 3300049575 Bacteria 5621
117 Ga0501042_0018326 3300049578 Bacteria 4845
118 Ga0501042_0041001 3300049578 Bacteria 3291
119 Ga0501046_0010700 3300049580 Bacteria 7869
120 Ga0501047_0032464 3300049581 Bacteria 5040
121 Ga0501048_0039050 3300049582 Bacteria 3406
122 Ga0501069_0000128 3300049585 Bacteria 33014
123 Ga0501069_0043272 3300049585 Bacteria 2492
124 Ga0501070_0000230 3300049586 Bacteria 52769
125 Ga0501070_0003375 3300049586 Bacteria 13849
126 Ga0501072_0001003 3300049588 Bacteria 20889
127 Ga0501072_0024695 3300049588 Bacteria 4678
128 Ga0501072_0035347 3300049588 Bacteria 3916
129 Ga0501075_0000997 3300049591 Bacteria 18088
130 Ga0501076_0006536 3300049592 Bacteria 8457
131 Ga0501076_0052046 3300049592 Bacteria 3243
132 Ga0501077_0006029 3300049593 Bacteria 7402
133 Ga0501079_0011146 3300049741 Bacteria 6856
134 Ga0501079_0080094 3300049741 Bacteria 2525
135 Ga0501080_0002244 3300049742 Bacteria 16800
136 Ga0501080_0064755 3300049742 Bacteria 3400
137 Ga0501081_0011629 3300049743 Bacteria 5760
138 Ga0501044_0001396 3300049823 Bacteria 28299
139 Ga0501045_0019229 3300049824 Bacteria 4866
140 Ga0501045_0030332 3300049824 Bacteria 3913
141 nmdc:mga00v17_38674_c1 3300050491 Bacteria 2854
142 nmdc:mga00v17_82157_c1 3300050491 Bacteria 2013
143 nmdc:mga0yw44_107011_c1 3300050492 Bacteria 1788
144 nmdc:mga0yw44_6893_c1 3300050492 Bacteria 5534
145 nmdc:mga06z11_16623_c1 3300050494 Bacteria 3318
146 nmdc:mga05p37_1794_c1 3300050507 Bacteria 25059
147 nmdc:mga09592_1131_c1 3300050508 Bacteria 21223
148 nmdc:mga09592_381_c1 3300050508 Bacteria 32515
149 nmdc:mga09592_46065_c1 3300050508 Bacteria 3674
150 nmdc:mga0qj67_3481_c1 3300050509 Bacteria 11343
151 nmdc:mga0qj67_6487_c1 3300050509 Bacteria 8598
152 nmdc:mga06r32_144_c1 3300050510 Bacteria 53470
153 nmdc:mga06r32_21545_c1 3300050510 Bacteria 5950
154 nmdc:mga06r32_5928_c1 3300050510 Bacteria 10997
155 nmdc:mga0rr50_70941_c1 3300050513 Bacteria 2656
156 Ga0495619_0022795 3300053085 Bacteria 4010
157 Ga0500566_0000455 3300053094 Bacteria 22754
158 Ga0500566_0048226 3300053094 Bacteria 2443
159 Ga0500568_0000470 3300053139 Bacteria 29839
160 Ga0501084_0000333 3300054114 Bacteria 36146
161 Ga0501084_0033093 3300054114 Bacteria 4324
162 Ga0501082_0057161 3300060353 Bacteria 3361
163 Ga0530510_0000800 3300061734 Bacteria 20504
164 Ga0530510_0001476 3300061734 Bacteria 15783
165 Ga0530510_0003622 3300061734 Bacteria 10628
166 Ga0530510_0042296 3300061734 Bacteria 3292
167 Ga0501048_0052238
168 Ga0070687_100046585
169 Ga0070671_100001319
170 Ga0070681_10120742
171 Ga0068866_10034064
172 Ga0068858_100011742
173 Ga0068860_100013420
174 Ga0081455_10012306
175 Ga0081455_10023889
176 Ga0081538_10000319
177 Ga0081538_10063024
178 Ga0075365_10025878
179 Ga0075365_10037609
180 Ga0075428_100009539
181 Ga0075428_100046251
182 Ga0075430_100003238
183 Ga0075430_100010795
184 Ga0075431_100001983
185 Ga0075431_100017396
186 Ga0075431_100024884
187 Ga0075429_100001075
188 Ga0075429_100013710
189 Ga0075429_100035063
190 Ga0075429_100153483
191 Ga0105245_10003365
192 Ga0105245_10009099
193 Ga0105245_10025320
194 Ga0114129_10003335
195 Ga0114129_10052615
196 Ga0105243_10017002
197 Ga0105242_10070588
198 Ga0157378_10001154
199 Ga0224712_10011000
200 Ga0207684_10048014
201 Ga0207662_10072748
202 Ga0207687_10003590
203 Ga0207687_10005458
204 Ga0207644_10150809
205 Ga0207709_10055526
206 Ga0207711_10098210
207 Ga0207712_10036737
208 Ga0207668_10051286
209 Ga0207703_10034493
210 Ga0207648_10012762
211 Ga0265338_10016077
212 Ga0265325_10002145
213 Ga0265339_10010431
214 Ga0265327_10000106
215 Ga0265327_10003087
216 Ga0265327_10011173
217 Ga0265313_10001701
218 Ga0316576_10005290
219 Ga0316576_10012745
220 Ga0316576_10040406
221 Ga0316576_10045063
222 Ga0316576_10054985
223 Ga0316578_10008442
224 Ga0316577_10021858
225 Ga0307407_10012381
226 Ga0307409_100031392
227 Ga0307416_100015303
228 Ga0307414_10010575
229 Ga0307411_10012219
230 Ga0307411_10025020
231 Ga0373930_0001042
232 Ga0373948_0005976
233 Ga0373928_0004811
234 Ga0373932_0003829
235 Ga0316574_0017826
236 Ga0316574_0026459
237 Ga0316574_0041710
238 Ga0373931_0000010
239 Ga0373931_0000021
240 Ga0373937_0030762
241 Ga0316582_0051797
242 Ga0316584_0010447
243 Ga0436365_0376202
244 Ga0439440_0002414
245 Ga0453684_0031795
246 Ga0495651_0023450
247 Ga0495653_0040710
248 Ga0495582_0044296
249 Ga0495608_0052164
250 Ga0495630_0062765
251 Ga0495657_0025752
252 Ga0495613_0000357
253 Ga0495672_0002623
254 Ga0495680_0011475
255 Ga0495680_0064492
256 Ga0496100_0012547
257 Ga0496101_0037341
258 Ga0496102_0083580
259 Ga0496104_0001408
260 Ga0496104_0034272
261 Ga0496104_0042785
262 Ga0496105_0044537
263 Ga0496108_0064126
264 Ga0496109_0006787
265 Ga0496110_0022780
266 Ga0496111_0021010
267 Ga0496111_0089284
268 Ga0496112_0003300
269 Ga0496112_0069022
270 Ga0496113_0002821
271 Ga0496114_0003167
272 Ga0496114_0007377
273 Ga0501031_0042648
274 Ga0501032_0153304
275 Ga0501033_0008567
276 Ga0501033_0012943
277 Ga0501034_0099233
278 Ga0501036_0010457
279 Ga0501036_0111436
280 Ga0501037_0000545
281 Ga0501038_0037566
282 Ga0501039_0016718
283 Ga0501042_0018326
284 Ga0501042_0041001
285 Ga0501046_0010700
286 Ga0501047_0032464
287 Ga0501048_0039050
288 Ga0501069_0000128
289 Ga0501069_0043272
290 Ga0501070_0000230
291 Ga0501070_0003375
292 Ga0501072_0001003
293 Ga0501072_0024695
294 Ga0501072_0035347
295 Ga0501075_0000997
296 Ga0501076_0006536
297 Ga0501076_0052046
298 Ga0501077_0006029
299 Ga0501079_0011146
300 Ga0501079_0080094
301 Ga0501080_0002244
302 Ga0501080_0064755
303 Ga0501081_0011629
304 Ga0501044_0001396
305 Ga0501045_0019229
306 Ga0501045_0030332
307 nmdc:mga00v17_38674_c1
308 nmdc:mga00v17_82157_c1
309 nmdc:mga0yw44_107011_c1
310 nmdc:mga0yw44_6893_c1
311 nmdc:mga06z11_16623_c1
312 nmdc:mga05p37_1794_c1
313 nmdc:mga09592_1131_c1
314 nmdc:mga09592_381_c1
315 nmdc:mga09592_46065_c1
316 nmdc:mga0qj67_3481_c1
317 nmdc:mga0qj67_6487_c1
318 nmdc:mga06r32_144_c1
319 nmdc:mga06r32_21545_c1
320 nmdc:mga06r32_5928_c1
321 nmdc:mga0rr50_70941_c1
322 Ga0495619_0022795
323 Ga0500566_0000455
324 Ga0500566_0048226
325 Ga0500568_0000470
326 Ga0501084_0000333
327 Ga0501084_0033093
328 Ga0501082_0057161
329 Ga0530510_0000800
330 Ga0530510_0001476
331 Ga0530510_0003622
332 Ga0530510_0042296

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00006

ATP-synt_ab

ATP synthase alpha/beta family, nucleotide-binding domain

279

486

0.94

PF07498

Rho_N

Rho termination factor, N-terminal domain

10

48

0.94

PF07497

Rho_RNA_bind

Rho termination factor, RNA-binding domain

196

247

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
6xas-assembly1.cif.gz_A cryoem structure of e. coli rho-dependent transcription pre-termination complex 0.9025 124 479
7oqh-assembly1.cif.gz_E cryoem structure of the transcription termination factor rho from mycobacterium tuberculosis 0.9012 141 479
6xav-assembly1.cif.gz_A cryoem structure of e. coli rho-dependent transcription pre-termination complex bound with nusg 0.8869 126 479
6xav-assembly1.cif.gz_A cryoem structure of e. coli rho-dependent transcription pre-termination complex bound with nusg 0.8821 126 479
7oqh-assembly1.cif.gz_D cryoem structure of the transcription termination factor rho from mycobacterium tuberculosis 0.8812 126 479
ID Description Score Start End Superfamily
2a8vA01 Mainly Alpha;Orthogonal Bundle;Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1; 0.9519 7 46 1.10.720.10
2a8vB01 Mainly Alpha;Orthogonal Bundle;Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1; 0.9461 7 46 1.10.720.10
1a8vA01 Mainly Alpha;Orthogonal Bundle;Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1; 0.9314 7 46 1.10.720.10
af_P0AG30_130_419_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9033 190 482 3.40.50.300
af_P0AG30_130_419_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9004 190 482 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A2M8PM72-F1-model_v4 Transcription termination factor Rho 0.9978 215 334 GO:0003723
GO:0005524
GO:0006353
GO:0008186
AF-A0A2M8Q6K7-F1-model_v4 Transcription termination factor Rho 0.9935 222 338 GO:0003723
GO:0005524
GO:0006353
GO:0008186
AF-A0A2M8Q6K7-F1-model_v4 Transcription termination factor Rho 0.9769 222 338 GO:0003723
GO:0005524
GO:0006353
GO:0008186
AF-A0A0P7Z482-F1-model_v4 ATPase F1/V1/A1 complex alpha/beta subunit nucleotide-binding domain-containing protein 0.9731 192 325 GO:0003723
GO:0005524
GO:0006353
GO:0008186
AF-A0A2M8PM72-F1-model_v4 Transcription termination factor Rho 0.9355 215 334 GO:0003723
GO:0005524
GO:0006353
GO:0008186

Map