F247312

General Info

Members Datasets Scaffolds Average Seq Length
165 123 125 344

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2890804823|2890807263
Length 389
Sequence MKCVVALLITGSVINGSTAQTTSLTTAERQEIINQVKQAVLDSLHNDNNPQKETFKHLTVSGYLETYYSYDFANPSNHVRQPFVYSFNRHNEVNLNFGVIKTSYDNKKIRANLGLMAGTYSNDNLAAEPGVIKNVFEANAGFKLSKTKQLWLDAGIFSSHIGFESAIGKDCWNLTRSLMADNSPYYETGVKISYTSDNEKWFVSGLILNGWQRVYRPDGNNTPAFGHQLTWKPNEKLTLNSSSFIGSDAPDSIRVMRYFHNLYGMFQFNDYIGLTLGFDIGIQQNSKGSNQYNPWYSPVAILRISPSEKTAIGIRGEYYSDAKGIIIATGTPNGFQTWGYSINFDYNINKYFIWRIEGRGFTSKDQIFMLNNAPSNHNFFLTTSLAVSF

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
3 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
4 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
5 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
6 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
7 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
8 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
9 2738541283 Pedobacter sp. OK701 Isolate Unclassified
10 2738541284 Pedobacter sp. YR016 Isolate Unclassified
11 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
12 2738541302 Pedobacter sp. CF074 Isolate Unclassified
13 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
14 2738543023 Pedobacter sp. OK628 Isolate Unclassified
15 2739367651 Pedobacter sp. OK291 Isolate Unclassified
16 2739367656 Pedobacter sp. CF523 Isolate Unclassified
17 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
18 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
19 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
20 2818991437 Pedobacter terrae 518 Isolate Unclassified
21 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
22 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
23 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
24 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
25 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
26 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
27 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
28 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
29 2890804823 Fluviicola sp. SGL-29 Isolate Rhizosphere
30 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
31 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
32 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
33 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
34 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
35 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
36 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
37 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
38 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
39 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
40 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
41 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
42 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
43 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
44 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
45 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
46 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
47 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
48 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
49 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
50 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
51 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
52 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
53 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
54 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
55 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
56 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
57 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
58 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
59 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
60 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
61 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
62 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
63 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
64 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
65 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
66 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
67 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
68 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
69 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
70 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
71 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
72 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
78 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
79 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
80 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
81 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
82 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
83 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
84 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
85 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
86 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
87 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
88 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
89 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
90 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
91 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
92 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
93 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
94 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
95 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
96 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
97 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
98 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
99 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
100 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
101 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
102 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
103 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
104 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
105 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
106 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
107 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
108 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
109 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
110 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
111 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
112 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
113 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
114 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
115 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
116 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
117 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
118 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
119 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
120 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
121 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
122 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
123 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 75.76
Metatranscriptomes 0
Isolates 24.24

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.48
Nodule 0.61
Rhizoplane 0.61
Rhizosphere 61.82
Stem 0
Stem Tuber 0
Unclassified 28.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_521196 2162886007 Bacteria 3746
2 JGI25165J46597_1002834 3300003214 Bacteria 4971
3 rootH1_10006447 3300003316 Unclassified 1248
4 rootH1_10006447 3300003323 Bacteria 3006
5 rootH1_10014376 3300003316 Bacteria 5663
6 rootL2_10004172 3300003322 Bacteria 5193
7 rootL2_10070923 3300003322 Bacteria 5391
8 rootH1_10001273 3300003323 Bacteria 39074
9 rootH1_10060279 3300003323 Bacteria 6729
10 rootH1_10074143 3300003323 Bacteria 1639
11 rootH1_10168894 3300003323 Bacteria 6374
12 rootH1_10175603 3300003323 Bacteria 6663
13 Ga0065714_10005563 3300005288 Bacteria 5059
14 Ga0065714_10021234 3300005288 Bacteria 2406
15 Ga0065714_10064609 3300005288 Bacteria 29247
16 Ga0065714_10066174 3300005288 Bacteria 7441
17 Ga0065714_10078191 3300005288 Bacteria 2621
18 Ga0065704_10012277 3300005289 Bacteria 2981
19 Ga0065704_10071456 3300005289 Bacteria 11080
20 Ga0065715_10000509 3300005293 Bacteria 11529
21 Ga0070681_10023909 3300005458 Bacteria 6151
22 Ga0068852_100202000 3300005616 Bacteria 1881
23 Ga0068863_100101715 3300005841 Bacteria 2732
24 Ga0097621_100180308 3300006237 Bacteria 1825
25 Ga0068871_100345958 3300006358 Bacteria 1314
26 Ga0105251_10060067 3300009011 Bacteria 1791
27 Ga0105244_10017601 3300009036 Bacteria 4033
28 Ga0105240_10392601 3300009093 Bacteria 1565
29 Ga0105237_10003934 3300009545 Bacteria 17398
30 Ga0105237_10015968 3300009545 Bacteria 7807
31 Ga0157373_10011425 3300013100 Bacteria 6531
32 Ga0157371_10000113 3300013102 Bacteria 122461
33 Ga0157371_10000438 3300013102 Bacteria 51021
34 Ga0157371_10001090 3300013102 Bacteria 29420
35 Ga0157370_10011837 3300013104 Bacteria 9102
36 Ga0157370_10017169 3300013104 Bacteria 7306
37 Ga0157370_10020600 3300013104 Bacteria 6582
38 Ga0157370_10029788 3300013104 Bacteria 5352
39 Ga0157370_10096740 3300013104 Bacteria 2770
40 Ga0157370_10193961 3300013104 Bacteria 1885
41 Ga0157370_10359459 3300013104 Bacteria 1342
42 Ga0157369_10000965 3300013105 Bacteria 36488
43 Ga0157369_10001442 3300013105 Bacteria 29190
44 Ga0163162_10000057 3300013306 Bacteria 109241
45 Ga0157372_10194746 3300013307 Bacteria 2348
46 Ga0157380_10025587 3300014326 Unclassified 4476
47 Ga0182008_10000346 3300014497 Bacteria 36122
48 Ga0182008_10052538 3300014497 Unclassified 2020
49 Ga0182008_10053594 3300014497 Bacteria 1997
50 Ga0182006_1000286 3300015261 Bacteria 44565
51 Ga0182006_1000945 3300015261 Bacteria 19365
52 Ga0182006_1000975 3300015261 Bacteria 18950
53 Ga0182006_1019298 3300015261 Bacteria 2870
54 Ga0182006_1028833 3300015261 Bacteria 2254
55 Ga0182007_10000007 3300015262 Bacteria 376596
56 Ga0182007_10022157 3300015262 Bacteria 2247
57 Ga0183373_1001 3300015682 Bacteria 1410374
58 Ga0163161_10000009 3300017792 Bacteria 287918
59 Ga0163161_10000342 3300017792 Bacteria 39548
60 Ga0163161_10001081 3300017792 Bacteria 20628
61 Ga0207427_100186 3300025231 Bacteria 63344
62 Ga0209437_100026 3300025233 Bacteria 542698
63 Ga0209233_1000206 3300025261 Bacteria 117820
64 Ga0209050_1003992 3300025298 Bacteria 10404
65 Ga0207655_1000093 3300025728 Bacteria 196813
66 Ga0207707_10027752 3300025912 Bacteria 4950
67 Ga0207671_10008031 3300025914 Bacteria 9025
68 Ga0207639_10037188 3300026041 Bacteria 3614
69 Ga0209281_1000158 3300027111 Bacteria 162280
70 Ga0307515_10000891 3300028794 Bacteria 68755
71 Ga0307515_10028651 3300028794 Bacteria 9454
72 Ga0307515_10064091 3300028794 Bacteria 5144
73 Ga0316179_1078521 3300030734 Bacteria 2017
74 Ga0307513_10146019 3300031456 Bacteria 2283
75 Ga0307513_10308821 3300031456 Bacteria 1345
76 Ga0307408_100001992 3300031548 Bacteria 14752
77 Ga0307408_100316038 3300031548 Bacteria 1314
78 Ga0307405_10000021 3300031731 Bacteria 155876
79 Ga0307405_10000089 3300031731 Bacteria 38978
80 Ga0307405_10061120 3300031731 Bacteria 2380
81 Ga0307413_10000228 3300031824 Bacteria 16574
82 Ga0307410_10000035 3300031852 Bacteria 48358
83 Ga0307406_10000074 3300031901 Bacteria 54985
84 Ga0307407_10000007 3300031903 Bacteria 210716
85 Ga0307409_100005648 3300031995 Bacteria 7242
86 Ga0307416_100000015 3300032002 Bacteria 210716
87 Ga0307414_10000005 3300032004 Bacteria 452161
88 Ga0307414_10011195 3300032004 Bacteria 5249
89 Ga0307414_10059920 3300032004 Bacteria 2690
90 Ga0307411_10000010 3300032005 Bacteria 238134
91 Ga0439466_0001572 3300041411 Bacteria 8921
92 Ga0451577_0024531 3300042876 Bacteria 5485
93 Ga0453684_0423268 3300044712 Unclassified 1487
94 Ga0495638_0000005 3300046460 Bacteria 680627
95 Ga0495606_0042609 3300046507 Bacteria 3034
96 Ga0495610_0000408 3300046512 Bacteria 44066
97 Ga0495610_0000460 3300046512 Bacteria 42065
98 Ga0495633_0010141 3300046558 Bacteria 5158
99 Ga0495686_0010951 3300047472 Bacteria 6421
100 Ga0496114_0098916 3300048917 Bacteria 2488
101 Ga0496116_0000156 3300048919 Bacteria 140734
102 Ga0496118_0104501 3300048921 Bacteria 1901
103 Ga0496121_0004461 3300048924 Bacteria 18799
104 Ga0496122_0002455 3300048925 Bacteria 26237
105 Ga0496123_0013608 3300048926 Bacteria 6811
106 Ga0496123_0063574 3300048926 Bacteria 2357
107 Ga0496124_0014134 3300048927 Bacteria 7735
108 Ga0496125_0000062 3300048928 Bacteria 259277
109 Ga0496126_0002702 3300048929 Bacteria 23441
110 Ga0501223_001322 3300049663 Bacteria 5735
111 Ga0501236_001384 3300049670 Bacteria 2759
112 Ga0501238_000605 3300049671 Bacteria 4113
113 Ga0501249_002980 3300049679 Bacteria 3404
114 Ga0501257_000430 3300049686 Bacteria 8283
115 Ga0501266_000009 3300049763 Bacteria 233584
116 Ga0501280_000138 3300049776 Bacteria 18855
117 Ga0501044_0209240 3300049823 Bacteria 1905
118 Ga0500644_0021766 3300053088 Unclassified 1926
119 Ga0500646_0078074 3300053090 Bacteria 1005
120 Ga0500641_0000048 3300053096 Bacteria 57304
121 Ga0500641_0000280 3300053096 Bacteria 19019
122 Ga0500658_0000006 3300053134 Bacteria 290380
123 Ga0500589_042185 3300053147 Bacteria 2128
124 Ga0500616_0000003 3300053153 Bacteria 1220687
125 Ga0500584_022781 3300053726 Bacteria 2914

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053090 Ga0500646_0078074 Ga0500646_0078074_24_899 253
2 3300049823 Ga0501044_0209240 Ga0501044_0209240_1023_1874 254
3 3300031456 Ga0307513_10146019 Ga0307513_101460192 286
4 3300049663 Ga0501223_001322 Ga0501223_001322_2601_3668 288
5 3300013104 Ga0157370_10193961 Ga0157370_101939611 297
6 3300013105 Ga0157369_10001442 Ga0157369_1000144220 297
7 3300015262 Ga0182007_10000007 Ga0182007_10000007312 297
8 3300013307 Ga0157372_10194746 Ga0157372_101947462 298
9 3300015261 Ga0182006_1000286 Ga0182006_10002863 299
10 3300053096 Ga0500641_0000280 Ga0500641_0000280_16119_17213 300
11 3300031456 Ga0307513_10308821 Ga0307513_103088211 305
12 3300031731 Ga0307405_10000089 Ga0307405_1000008916 305
13 3300009545 Ga0105237_10015968 Ga0105237_100159685 307
14 3300031548 Ga0307408_100316038 Ga0307408_1003160381 308
15 3300049670 Ga0501236_001384 Ga0501236_001384_1206_2285 308
16 3300049686 Ga0501257_000430 Ga0501257_000430_2251_3330 308
17 3300046558 Ga0495633_0010141 Ga0495633_0010141_3163_4233 310
18 3300053153 Ga0500616_0000003 Ga0500616_0000003_1132926_1133978 310
19 3300003323 rootH1_10074143 rootH1_100741432 311
20 3300009093 Ga0105240_10392601 Ga0105240_103926012 311
21 3300048921 Ga0496118_0104501 Ga0496118_0104501_647_1726 311
22 iso_pu_bacteria 2902048731 2902053028 311
23 3300005288 Ga0065714_10005563 Ga0065714_100055633 312
24 iso_pu_bacteria 2585427687 2586209740 312
25 iso_pu_bacteria 2738541283 2738756937 312
26 iso_pu_bacteria 2738541284 2738760543 312
27 iso_pu_bacteria 2738541302 2738855946 312
28 iso_pu_bacteria 2738543023 2739303393 312
29 iso_pu_bacteria 2739367651 2739589143 312
30 iso_pu_bacteria 2739367656 2739616261 312
31 iso_pu_bacteria 2818991437 2819546994 312
32 iso_pu_bacteria 2842722452 2842727769 312
33 iso_pu_bacteria 2842909656 2842914826 312
34 iso_pu_bacteria 2849281842 2849283350 312
35 iso_pu_bacteria 2852627209 2852628323 312
36 iso_pu_bacteria 2857627736 2857631366 312
37 iso_pu_bacteria 2904445276 2904449290 312
38 iso_pu_bacteria 2919186247 2919186541 312
39 iso_pu_bacteria 2939664404 2939666188 312
40 iso_pu_bacteria 2945997725 2946002694 312
41 iso_pu_bacteria 2954016120 2954019572 312
42 3300005288 Ga0065714_10066174 Ga0065714_100661745 313
43 3300005289 Ga0065704_10012277 Ga0065704_100122772 313
44 3300014326 Ga0157380_10025587 Ga0157380_100255872 313
45 3300032004 Ga0307414_10011195 Ga0307414_100111954 313
46 3300013102 Ga0157371_10000438 Ga0157371_100004382 314
47 iso_pu_bacteria 2513020052 2513233205 314
48 iso_pu_bacteria 2643221600 2644011064 314
49 iso_pu_bacteria 2643221667 2644371985 314
50 iso_pu_bacteria 2643221716 2644643554 314
51 iso_pu_bacteria 2643221725 2644683910 314
52 iso_pu_bacteria 2738541279 2738737095 314
53 iso_pu_bacteria 2738541285 2738769635 314
54 iso_pu_bacteria 2738543007 2739218677 314
55 iso_pu_bacteria 2739367857 2739999396 314
56 iso_pu_bacteria 2739367858 2740004213 314
57 iso_pu_bacteria 2802428842 2802652201 314
58 iso_pu_bacteria 2857613821 2857617482 314
59 iso_pu_bacteria 2857618242 2857621291 314
60 iso_pu_bacteria 2881359912 2881359921 314
61 iso_pu_bacteria 2904419702 2904421784 314
62 iso_pu_bacteria 2904555929 2904559916 314
63 iso_pu_bacteria 2919191525 2919195783 314
64 iso_pu_bacteria 2929150217 2929152232 314
65 iso_pu_bacteria 2977268062 2977268932 314
66 iso_pu_bacteria 8056440228 8056442530 314
67 3300003323 rootH1_10060279 rootH1_100602794 315
68 3300005288 Ga0065714_10021234 Ga0065714_100212343 315
69 3300005288 Ga0065714_10064609 Ga0065714_1006460911 315
70 3300005288 Ga0065714_10078191 Ga0065714_100781912 315
71 3300005616 Ga0068852_100202000 Ga0068852_1002020003 315
72 3300009036 Ga0105244_10017601 Ga0105244_100176013 315
73 3300009545 Ga0105237_10003934 Ga0105237_1000393411 315
74 3300013100 Ga0157373_10011425 Ga0157373_100114254 315
75 3300013102 Ga0157371_10000113 Ga0157371_1000011398 315
76 3300013104 Ga0157370_10020600 Ga0157370_100206004 315
77 3300013306 Ga0163162_10000057 Ga0163162_1000005740 315
78 3300014497 Ga0182008_10000346 Ga0182008_1000034618 315
79 3300014497 Ga0182008_10052538 Ga0182008_100525382 315
80 3300014497 Ga0182008_10053594 Ga0182008_100535942 315
81 3300015261 Ga0182006_1000945 Ga0182006_100094513 315
82 3300015261 Ga0182006_1000975 Ga0182006_10009754 315
83 3300015262 Ga0182007_10022157 Ga0182007_100221573 315
84 3300015682 Ga0183373_1001 Ga0183373_100112 315
85 3300017792 Ga0163161_10000342 Ga0163161_1000034238 315
86 3300017792 Ga0163161_10001081 Ga0163161_1000108113 315
87 3300025914 Ga0207671_10008031 Ga0207671_100080313 315
88 3300028794 Ga0307515_10028651 Ga0307515_100286513 315
89 3300031903 Ga0307407_10000007 Ga0307407_1000000721 315
90 3300031995 Ga0307409_100005648 Ga0307409_1000056482 315
91 3300032002 Ga0307416_100000015 Ga0307416_100000015165 315
92 3300032004 Ga0307414_10059920 Ga0307414_100599202 315
93 3300046507 Ga0495606_0042609 Ga0495606_0042609_1785_2855 315
94 3300046512 Ga0495610_0000408 Ga0495610_0000408_21205_22302 315
95 3300046512 Ga0495610_0000460 Ga0495610_0000460_13598_14668 315
96 3300048917 Ga0496114_0098916 Ga0496114_0098916_1234_2304 315
97 3300048925 Ga0496122_0002455 Ga0496122_0002455_10783_11892 315
98 3300048926 Ga0496123_0013608 Ga0496123_0013608_1478_2587 315
99 3300028794 Ga0307515_10000891 Ga0307515_1000089160 316
100 3300028794 Ga0307515_10064091 Ga0307515_100640913 316
101 3300005458 Ga0070681_10023909 Ga0070681_100239093 317
102 3300009011 Ga0105251_10060067 Ga0105251_100600672 317
103 3300013102 Ga0157371_10001090 Ga0157371_100010903 317
104 3300013104 Ga0157370_10011837 Ga0157370_100118378 317
105 3300013104 Ga0157370_10017169 Ga0157370_100171693 317
106 3300013104 Ga0157370_10359459 Ga0157370_103594591 317
107 3300013105 Ga0157369_10000965 Ga0157369_1000096525 317
108 3300015261 Ga0182006_1019298 Ga0182006_10192983 317
109 3300017792 Ga0163161_10000009 Ga0163161_1000000915 317
110 3300025728 Ga0207655_1000093 Ga0207655_100009319 317
111 3300025912 Ga0207707_10027752 Ga0207707_100277524 317
112 3300027111 Ga0209281_1000158 Ga0209281_10001581 317
113 3300030734 Ga0316179_1078521 Ga0316179_10785212 317
114 3300031548 Ga0307408_100001992 Ga0307408_10000199212 317
115 3300031731 Ga0307405_10061120 Ga0307405_100611202 317
116 3300031824 Ga0307413_10000228 Ga0307413_100002283 317
117 3300031852 Ga0307410_10000035 Ga0307410_100000358 317
118 3300031901 Ga0307406_10000074 Ga0307406_100000748 317
119 3300032004 Ga0307414_10000005 Ga0307414_100000057 317
120 3300032005 Ga0307411_10000010 Ga0307411_1000001010 317
121 3300041411 Ga0439466_0001572 Ga0439466_0001572_7370_8446 317
122 3300048919 Ga0496116_0000156 Ga0496116_0000156_15667_16746 317
123 3300048924 Ga0496121_0004461 Ga0496121_0004461_1859_2938 317
124 3300048927 Ga0496124_0014134 Ga0496124_0014134_899_1978 317
125 3300048928 Ga0496125_0000062 Ga0496125_0000062_15501_16580 317
126 3300048929 Ga0496126_0002702 Ga0496126_0002702_9295_10371 317
127 3300049671 Ga0501238_000605 Ga0501238_000605_2512_3588 317
128 3300049679 Ga0501249_002980 Ga0501249_002980_1685_2761 317
129 3300049763 Ga0501266_000009 Ga0501266_000009_14424_15500 317
130 3300049776 Ga0501280_000138 Ga0501280_000138_11455_12531 317
131 3300053096 Ga0500641_0000048 Ga0500641_0000048_41066_42142 317
132 3300053134 Ga0500658_0000006 Ga0500658_0000006_19410_20498 317
133 3300053147 Ga0500589_042185 Ga0500589_042185_96_1184 317
134 3300053726 Ga0500584_022781 Ga0500584_022781_165_1241 317
135 3300003214 JGI25165J46597_1002834 JGI25165J46597_10028343 318
136 3300003316 rootH1_10006447 rootH1_100064471 318
137 3300003322 rootL2_10004172 rootL2_100041725 318
138 3300003322 rootL2_10070923 rootL2_100709233 318
139 3300003323 rootH1_10001273 rootH1_100012735 318
140 3300003323 rootH1_10175603 rootH1_101756034 318
141 3300005293 Ga0065715_10000509 Ga0065715_100005096 318
142 3300005841 Ga0068863_100101715 Ga0068863_1001017153 318
143 3300006237 Ga0097621_100180308 Ga0097621_1001803082 318
144 3300006358 Ga0068871_100345958 Ga0068871_1003459581 318
145 3300025231 Ga0207427_100186 Ga0207427_10018645 318
146 3300025233 Ga0209437_100026 Ga0209437_100026383 318
147 3300025233 Ga0209437_100026 Ga0209437_10002645 318
148 3300025261 Ga0209233_1000206 Ga0209233_100020626 318
149 3300025298 Ga0209050_1003992 Ga0209050_10039922 318
150 3300042876 Ga0451577_0024531 Ga0451577_0024531_2352_3428 318
151 3300044712 Ga0453684_0423268 Ga0453684_0423268_378_1454 318
152 3300046460 Ga0495638_0000005 Ga0495638_0000005_597352_598431 318
153 3300047472 Ga0495686_0010951 Ga0495686_0010951_3118_4197 318
154 3300048926 Ga0496123_0063574 Ga0496123_0063574_1145_2227 318
155 3300053088 Ga0500644_0021766 Ga0500644_0021766_443_1549 318
156 3300003316 rootH1_10014376 rootH1_100143764 319
157 3300013104 Ga0157370_10096740 Ga0157370_100967403 319
158 3300003323 rootH1_10168894 rootH1_101688946 320
159 3300026041 Ga0207639_10037188 Ga0207639_100371882 320
160 2162886007 SwRhRL2b_contig_521196 SwRhRL2b_0189.00004970 321
161 3300005289 Ga0065704_10071456 Ga0065704_100714567 321
162 3300013104 Ga0157370_10029788 Ga0157370_100297883 321
163 3300015261 Ga0182006_1028833 Ga0182006_10288333 321
164 3300031731 Ga0307405_10000021 Ga0307405_1000002131 321
165 iso_pu_bacteria 2890804823 2890807263 321

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07642

BBP2

Putative beta-barrel porin-2, OmpL-like. bbp2

57

389

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
4pr7-assembly1.cif.gz_A kdgm porin in complex with disordered oligogalacturonate 0.6596 119 321
4ctd-assembly1.cif.gz_B x-ray structure of an engineered ompg loop6-deletion 0.6391 32 321
2o4v-assembly1.cif.gz_B an arginine ladder in oprp mediates phosphate specific transfer across the outer membrane 0.633 30 321
2wjr-assembly1.cif.gz_A nanc porin structure in rhombohedral crystal form. 0.6319 34 319
4rjx-assembly1.cif.gz_A-3 crystal structure of the opro mutant protein f62y/d114y 0.6275 30 321
ID Description Score Start End Superfamily
af_P34685_112_256_3.90.1150.210 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;F-actin capping protein, beta subunit 0.6773 158 240 3.90.1150.210
4ctdB00 Mainly Beta;Beta Barrel;Porin;monomeric porin ompg 0.6391 32 321 2.40.160.40
af_Q47534_18_255_2.40.160.10 Mainly Beta;Beta Barrel;Porin;Porin 0.6375 30 318 2.40.160.10
1iznA02 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;F-actin capping protein, beta subunit 0.6367 158 240 3.90.1150.210
2o4vB00 Mainly Beta;Beta Barrel;Porin;Porin 0.633 30 321 2.40.160.10
ID Description Score Start End GO Terms
AF-A0A257W6N4-F1-model_v4 Porin 0.9156 197 321
AF-A0A811AIX3-F1-model_v4 deleted 0.9065 188 321
AF-A0A7X7VGA0-F1-model_v4 Outer membrane beta-barrel protein 0.9005 160 321
AF-A0A4V1SL70-F1-model_v4 deleted 0.9001 200 321
AF-A0A3B9AJM7-F1-model_v4 Porin 0.8953 198 321

Feature Viewer

pLDDT pTM Quality
82.4 0.79 High
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Predicted Structure (AlphaFold2)

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