F246470

General Info

Members Datasets Scaffolds Average Seq Length
165 110 159 314

Family's Representative Sequence

Representative Sequence 3300031251|Ga0265327_10001569|Ga0265327_1000156919
Length 340
Sequence MTDARLPDAAPSNWVDRFAPARLRPWLKLGRLDRPNPVWLLILPGWQGLALAAAMRGDWPDPILLAEFFVGGVLMRAAGCAYNDIVDADIDAKVARTAMRPIPAGQISKRGAWAFLVACSLGGLAILLSLNFLSVLLGIISLGLVAAYPFMKRVTWWPQAWLGLTFNWGALLGFAAAQDGQPMALSLAMLAGAWSHGIDLTLALPSGLAWPAFLLYGSGIFWTLGYDTIYAVQDIEDDALAGVKSSARRLGEQAPMAVLIFYILTAFLALAAWWSGHLGPLSVPLIAIYAAHLSRQPTKLRLGDSAGALALFKSNTLAALFLFAAFVAGRFQFGLLEGLR

Samples

Sample ID Description Type Environment
1 2791355048 Caulobacter flavus CGMCC1 15093 Isolate Rhizosphere
2 2843744320 Caulobacter flavus RHGG3 Isolate Unclassified
3 2849560528 Caulobacter zeae 410 Isolate Unclassified
4 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
5 2851153111 Caulobacter radicis 736 Isolate Unclassified
6 2898329390 Caulobacter sp. 602-2 Isolate Rhizosphere
7 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
8 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
9 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
10 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
14 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
15 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
26 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
27 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
28 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
29 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
32 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
35 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
36 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
37 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
38 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
39 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
61 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
62 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
63 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
64 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
65 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
66 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
67 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
68 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
71 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
72 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
75 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
76 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
77 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
78 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
79 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
80 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
81 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
82 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
83 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
84 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
85 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
86 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
87 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
88 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
89 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
90 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
95 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
96 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
97 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
98 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
99 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
100 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
101 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
102 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
103 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
104 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
105 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
106 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
107 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
108 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
109 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
110 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.36
Metatranscriptomes 0
Isolates 3.64

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.21
Nodule 0
Rhizoplane 2.42
Rhizosphere 65.45
Stem 0
Stem Tuber 0
Unclassified 10.91

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055530_10000597 3300003791 Bacteria 31200
2 Ga0055531_10037276 3300003794 Bacteria 1482
3 Ga0065165_1000216 3300005262 Bacteria 100208
4 Ga0070658_10235433 3300005327 Bacteria 1551
5 Ga0068869_100157826 3300005334 Bacteria 1764
6 Ga0070680_100064442 3300005336 Bacteria 3003
7 Ga0070680_100141405 3300005336 Bacteria 2018
8 Ga0070660_100037333 3300005339 Bacteria 3683
9 Ga0070668_100005176 3300005347 Bacteria 9673
10 Ga0070668_100017642 3300005347 Bacteria 5352
11 Ga0070659_100007276 3300005366 Bacteria 8037
12 Ga0070681_10049078 3300005458 Bacteria 4216
13 Ga0070681_10081939 3300005458 Bacteria 3182
14 Ga0070679_100004967 3300005530 Bacteria 12280
15 Ga0070679_100022320 3300005530 Bacteria 6186
16 Ga0068853_100085409 3300005539 Bacteria 2766
17 Ga0070665_100000058 3300005548 Bacteria 225040
18 Ga0070665_100491842 3300005548 Bacteria 1238
19 Ga0068855_100073958 3300005563 Bacteria 3958
20 Ga0068855_100158129 3300005563 Bacteria 2574
21 Ga0068855_100536874 3300005563 Bacteria 1267
22 Ga0068864_100000265 3300005618 Bacteria 46817
23 Ga0068863_100010094 3300005841 Bacteria 9183
24 Ga0068863_100164095 3300005841 Bacteria 2130
25 Ga0068858_100000408 3300005842 Bacteria 44660
26 Ga0068862_100078271 3300005844 Bacteria 2865
27 Ga0075368_10012859 3300006042 Bacteria 3066
28 Ga0075364_10001656 3300006051 Bacteria 12242
29 Ga0075367_10019030 3300006178 Bacteria 3800
30 Ga0075370_10069171 3300006353 Bacteria 2017
31 Ga0068865_100000107 3300006881 Bacteria 43014
32 Ga0105240_10005853 3300009093 Bacteria 18229
33 Ga0105240_10092529 3300009093 Bacteria 3692
34 Ga0105248_10023453 3300009177 Bacteria 6855
35 Ga0105238_10019911 3300009551 Bacteria 6829
36 Ga0105238_10061374 3300009551 Bacteria 3762
37 Ga0105238_10098777 3300009551 Bacteria 2903
38 Ga0157370_10062025 3300013104 Bacteria 3546
39 Ga0157370_10268922 3300013104 Bacteria 1575
40 Ga0163163_10049220 3300014325 Bacteria 4147
41 Ga0213874_10000526 3300021377 Bacteria 7694
42 Ga0213876_10000116 3300021384 Bacteria 86507
43 Ga0209233_1019700 3300025261 Bacteria 1787
44 Ga0209256_1010530 3300025299 Bacteria 3853
45 Ga0209257_1001000 3300025304 Bacteria 38276
46 Ga0207705_10002955 3300025909 Bacteria 12997
47 Ga0207707_10045647 3300025912 Bacteria 3818
48 Ga0207707_10217306 3300025912 Bacteria 1664
49 Ga0207695_10008114 3300025913 Bacteria 13203
50 Ga0207695_10021048 3300025913 Bacteria 7450
51 Ga0207695_10053974 3300025913 Bacteria 4200
52 Ga0207695_10090721 3300025913 Bacteria 3071
53 Ga0207660_10008257 3300025917 Bacteria 6730
54 Ga0207660_10101541 3300025917 Bacteria 2149
55 Ga0207657_10000435 3300025919 Bacteria 44495
56 Ga0207657_10083347 3300025919 Bacteria 2683
57 Ga0207652_10030999 3300025921 Bacteria 4485
58 Ga0207652_10120360 3300025921 Bacteria 2335
59 Ga0207694_10050626 3300025924 Bacteria 3218
60 Ga0207694_10103443 3300025924 Bacteria 2258
61 Ga0207644_10343926 3300025931 Bacteria 1210
62 Ga0207690_10006298 3300025932 Bacteria 7031
63 Ga0207690_10066875 3300025932 Bacteria 2463
64 Ga0207704_10078257 3300025938 Bacteria 2126
65 Ga0207711_10013936 3300025941 Bacteria 6677
66 Ga0207711_10209168 3300025941 Bacteria 1782
67 Ga0207667_10006391 3300025949 Bacteria 14284
68 Ga0207667_10011017 3300025949 Bacteria 10533
69 Ga0207667_10027269 3300025949 Bacteria 6221
70 Ga0207667_10102254 3300025949 Bacteria 2956
71 Ga0207667_10381700 3300025949 Bacteria 1436
72 Ga0207703_10000171 3300026035 Bacteria 75791
73 Ga0207641_10000007 3300026088 Bacteria 441443
74 Ga0207641_10408419 3300026088 Bacteria 1305
75 Ga0207676_10000268 3300026095 Bacteria 45354
76 Ga0207674_10060759 3300026116 Bacteria 3821
77 Ga0207698_10340442 3300026142 Bacteria 1413
78 Ga0207698_10402590 3300026142 Bacteria 1308
79 Ga0209813_10010771 3300027866 Bacteria 2374
80 Ga0268266_10000005 3300028379 Bacteria 1448194
81 Ga0268266_10070612 3300028379 Bacteria 3026
82 Ga0268265_10070328 3300028380 Bacteria 2721
83 Ga0307517_10010060 3300028786 Bacteria 13292
84 Ga0307517_10119626 3300028786 Bacteria 1954
85 Ga0265338_10002138 3300028800 Bacteria 30367
86 Ga0265338_10005492 3300028800 Bacteria 16523
87 Ga0265338_10011411 3300028800 Bacteria 10262
88 Ga0265338_10079244 3300028800 Bacteria 2765
89 Ga0265340_10034457 3300031247 Bacteria 2518
90 Ga0265327_10001569 3300031251 Bacteria 27986
91 Ga0307513_10000045 3300031456 Bacteria 158626
92 Ga0307513_10008063 3300031456 Bacteria 13522
93 Ga0307510_10095199 3300033180 Bacteria 2799
94 Ga0373936_0011776 3300035113 Bacteria 3317
95 Ga0373933_0180086 3300035724 Bacteria 1348
96 Ga0395899_0000373 3300037312 Bacteria 53717
97 Ga0395899_0131365 3300037312 Bacteria 1787
98 Ga0395899_0169965 3300037312 Bacteria 1535
99 Ga0395900_0000052 3300037418 Bacteria 223910
100 Ga0395900_0138878 3300037418 Bacteria 2489
101 Ga0395900_0391568 3300037418 Bacteria 1355
102 Ga0395898_0112928 3300037466 Bacteria 2604
103 Ga0395898_0131074 3300037466 Bacteria 2401
104 Ga0395905_0002805 3300037471 Bacteria 19098
105 Ga0395905_0203979 3300037471 Bacteria 1853
106 Ga0436364_1514724 3300037853 Bacteria 3494
107 Ga0395901_0000001 3300038443 Bacteria 800383
108 Ga0395901_0058971 3300038443 Bacteria 3993
109 Ga0436365_0783883 3300039437 Bacteria 1907
110 Ga0436365_1226135 3300039437 Bacteria 85915
111 Ga0436361_0323624 3300039447 Bacteria 19767
112 Ga0495628_0047678 3300046516 Bacteria 3398
113 Ga0495642_0027857 3300046528 Bacteria 2249
114 Ga0495645_0032199 3300046543 Bacteria 3824
115 Ga0495668_0084446 3300046616 Bacteria 1741
116 Ga0495599_0191351 3300046678 Bacteria 1259
117 Ga0495669_0000012 3300046684 Bacteria 157373
118 Ga0495669_0000141 3300046684 Bacteria 45672
119 Ga0495649_0175227 3300046694 Bacteria 1121
120 Ga0495677_0003903 3300047445 Bacteria 5768
121 Ga0495686_0000049 3300047472 Bacteria 275004
122 Ga0496102_0008809 3300048905 Bacteria 8657
123 Ga0496115_0004139 3300048918 Bacteria 10471
124 Ga0496115_0007576 3300048918 Bacteria 7995
125 Ga0496115_0275851 3300048918 Bacteria 1381
126 Ga0496117_0169281 3300048920 Bacteria 1270
127 Ga0496118_0007829 3300048921 Bacteria 11206
128 Ga0496119_0024404 3300048922 Bacteria 4255
129 Ga0496121_0000467 3300048924 Bacteria 78851
130 Ga0501034_0136579 3300049571 Bacteria 2433
131 Ga0501038_0172469 3300049574 Bacteria 1750
132 Ga0501047_0165506 3300049581 Bacteria 2082
133 Ga0501070_0124566 3300049586 Bacteria 2130
134 Ga0501044_0001576 3300049823 Bacteria 26677
135 nmdc:mga00v17_756_c1 3300050491 Bacteria 17541
136 nmdc:mga04h51_8230_c1 3300050495 Bacteria 2785
137 nmdc:mga07m45_92033_c1 3300050496 Bacteria 1738
138 Ga0495601_0078107 3300053077 Bacteria 2121
139 Ga0500643_000645 3300053087 Bacteria 23410
140 Ga0500643_003880 3300053087 Bacteria 6955
141 Ga0500643_004744 3300053087 Bacteria 6035
142 Ga0500643_011757 3300053087 Bacteria 3172
143 Ga0500646_0023595 3300053090 Bacteria 1651
144 Ga0500641_0003718 3300053096 Bacteria 5388
145 Ga0500641_0003924 3300053096 Bacteria 5257
146 Ga0500555_013999 3300053103 Bacteria 2312
147 Ga0500556_0001119 3300053104 Bacteria 13306
148 Ga0500556_0007771 3300053104 Bacteria 3073
149 Ga0500562_002943 3300053108 Bacteria 4249
150 Ga0500562_003418 3300053108 Bacteria 3973
151 Ga0500562_004292 3300053108 Bacteria 3607
152 Ga0500559_0000023 3300053136 Bacteria 127993
153 Ga0500559_0000046 3300053136 Bacteria 98853
154 Ga0500616_0085184 3300053153 Bacteria 1579
155 Ga0500622_0005020 3300053156 Bacteria 8065
156 Ga0500622_0013304 3300053156 Bacteria 4439
157 Ga0500636_0004725 3300053177 Bacteria 7723
158 Ga0500645_000686 3300053730 Bacteria 21151
159 Ga0500645_000753 3300053730 Bacteria 19848

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300028800 Ga0265338_10011411 Ga0265338_100114116 242
2 3300026142 Ga0207698_10402590 Ga0207698_104025902 249
3 3300005336 Ga0070680_100141405 Ga0070680_1001414052 250
4 3300005458 Ga0070681_10049078 Ga0070681_100490783 250
5 3300009093 Ga0105240_10092529 Ga0105240_100925292 250
6 3300013104 Ga0157370_10268922 Ga0157370_102689222 250
7 3300025912 Ga0207707_10045647 Ga0207707_100456473 250
8 3300025913 Ga0207695_10021048 Ga0207695_100210488 250
9 3300025917 Ga0207660_10101541 Ga0207660_101015412 250
10 3300025949 Ga0207667_10011017 Ga0207667_1001101710 250
11 3300026142 Ga0207698_10340442 Ga0207698_103404422 255
12 3300025913 Ga0207695_10090721 Ga0207695_100907212 256
13 3300005347 Ga0070668_100005176 Ga0070668_1000051763 259
14 3300005844 Ga0068862_100078271 Ga0068862_1000782714 259
15 3300053108 Ga0500562_003418 Ga0500562_003418_360_1280 263
16 3300021377 Ga0213874_10000526 Ga0213874_1000052610 265
17 3300005563 Ga0068855_100536874 Ga0068855_1005368741 267
18 3300013104 Ga0157370_10062025 Ga0157370_100620252 267
19 3300025949 Ga0207667_10381700 Ga0207667_103817002 267
20 3300005347 Ga0070668_100017642 Ga0070668_1000176423 268
21 3300053104 Ga0500556_0001119 Ga0500556_0001119_9105_10031 270
22 3300053108 Ga0500562_002943 Ga0500562_002943_105_1031 270
23 3300028800 Ga0265338_10002138 Ga0265338_1000213814 271
24 3300053108 Ga0500562_004292 Ga0500562_004292_1812_2747 271
25 3300053103 Ga0500555_013999 Ga0500555_013999_910_1833 272
26 3300035113 Ga0373936_0011776 Ga0373936_0011776_1894_2883 273
27 3300035724 Ga0373933_0180086 Ga0373933_0180086_119_1060 273
28 3300048918 Ga0496115_0004139 Ga0496115_0004139_377_1366 273
29 3300026088 Ga0207641_10408419 Ga0207641_104084192 274
30 3300009551 Ga0105238_10019911 Ga0105238_100199113 276
31 3300025924 Ga0207694_10103443 Ga0207694_101034432 276
32 3300031247 Ga0265340_10034457 Ga0265340_100344573 276
33 3300039437 Ga0436365_0783883 Ga0436365_0783883_469_1410 276
34 3300049586 Ga0501070_0124566 Ga0501070_0124566_1154_2077 276
35 3300028800 Ga0265338_10079244 Ga0265338_100792442 278
36 iso_pu_bacteria 2791355048 2792458547 278
37 iso_pu_bacteria 2843744320 2843745164 278
38 iso_pu_bacteria 2849560528 2849564043 278
39 iso_pu_bacteria 2849573788 2849577496 278
40 iso_pu_bacteria 2851153111 2851157492 278
41 iso_pu_bacteria 2898329390 2898332167 278
42 3300053096 Ga0500641_0003924 Ga0500641_0003924_3677_4579 279
43 3300009093 Ga0105240_10005853 Ga0105240_1000585312 281
44 3300025913 Ga0207695_10053974 Ga0207695_100539743 281
45 3300006881 Ga0068865_100000107 Ga0068865_10000010717 282
46 3300025299 Ga0209256_1010530 Ga0209256_10105304 282
47 3300025938 Ga0207704_10078257 Ga0207704_100782572 282
48 3300031456 Ga0307513_10000045 Ga0307513_1000004568 282
49 3300031456 Ga0307513_10008063 Ga0307513_1000806312 282
50 3300039447 Ga0436361_0323624 Ga0436361_0323624_6875_7873 282
51 3300046528 Ga0495642_0027857 Ga0495642_0027857_99_1016 282
52 3300046616 Ga0495668_0084446 Ga0495668_0084446_150_1076 282
53 3300046684 Ga0495669_0000012 Ga0495669_0000012_154626_155543 282
54 3300047445 Ga0495677_0003903 Ga0495677_0003903_1999_2916 282
55 3300049574 Ga0501038_0172469 Ga0501038_0172469_231_1181 282
56 3300049823 Ga0501044_0001576 Ga0501044_0001576_2354_3304 282
57 3300053087 Ga0500643_000645 Ga0500643_000645_13188_14114 282
58 3300053087 Ga0500643_011757 Ga0500643_011757_408_1334 282
59 3300053090 Ga0500646_0023595 Ga0500646_0023595_227_1144 282
60 3300053096 Ga0500641_0003718 Ga0500641_0003718_80_1006 282
61 3300053104 Ga0500556_0007771 Ga0500556_0007771_383_1309 282
62 3300053153 Ga0500616_0085184 Ga0500616_0085184_320_1246 282
63 3300053156 Ga0500622_0005020 Ga0500622_0005020_873_1799 282
64 3300053730 Ga0500645_000686 Ga0500645_000686_9499_10425 282
65 3300053730 Ga0500645_000753 Ga0500645_000753_15111_16037 282
66 3300005262 Ga0065165_1000216 Ga0065165_100021621 283
67 3300005327 Ga0070658_10235433 Ga0070658_102354331 283
68 3300005336 Ga0070680_100064442 Ga0070680_1000644422 283
69 3300005339 Ga0070660_100037333 Ga0070660_1000373332 283
70 3300005366 Ga0070659_100007276 Ga0070659_1000072763 283
71 3300005458 Ga0070681_10081939 Ga0070681_100819392 283
72 3300005530 Ga0070679_100004967 Ga0070679_1000049671 283
73 3300005539 Ga0068853_100085409 Ga0068853_1000854092 283
74 3300005548 Ga0070665_100000058 Ga0070665_100000058198 283
75 3300005548 Ga0070665_100491842 Ga0070665_1004918422 283
76 3300005563 Ga0068855_100158129 Ga0068855_1001581292 283
77 3300005841 Ga0068863_100164095 Ga0068863_1001640951 283
78 3300009551 Ga0105238_10061374 Ga0105238_100613742 283
79 3300014325 Ga0163163_10049220 Ga0163163_100492202 283
80 3300025261 Ga0209233_1019700 Ga0209233_10197002 283
81 3300025909 Ga0207705_10002955 Ga0207705_100029552 283
82 3300025917 Ga0207660_10008257 Ga0207660_100082576 283
83 3300025919 Ga0207657_10000435 Ga0207657_1000043516 283
84 3300025919 Ga0207657_10083347 Ga0207657_100833472 283
85 3300025921 Ga0207652_10030999 Ga0207652_100309992 283
86 3300025931 Ga0207644_10343926 Ga0207644_103439261 283
87 3300025932 Ga0207690_10006298 Ga0207690_100062983 283
88 3300025932 Ga0207690_10066875 Ga0207690_100668752 283
89 3300025941 Ga0207711_10209168 Ga0207711_102091682 283
90 3300025949 Ga0207667_10006391 Ga0207667_100063919 283
91 3300025949 Ga0207667_10027269 Ga0207667_100272693 283
92 3300026116 Ga0207674_10060759 Ga0207674_100607592 283
93 3300028379 Ga0268266_10000005 Ga0268266_10000005291 283
94 3300028379 Ga0268266_10070612 Ga0268266_100706122 283
95 3300028380 Ga0268265_10070328 Ga0268265_100703281 283
96 3300028786 Ga0307517_10119626 Ga0307517_101196262 283
97 3300028800 Ga0265338_10005492 Ga0265338_100054925 283
98 3300031251 Ga0265327_10001569 Ga0265327_1000156919 283
99 3300037312 Ga0395899_0000373 Ga0395899_0000373_37053_38066 283
100 3300037418 Ga0395900_0000052 Ga0395900_0000052_106441_107454 283
101 3300037418 Ga0395900_0138878 Ga0395900_0138878_1040_1963 283
102 3300037466 Ga0395898_0112928 Ga0395898_0112928_381_1304 283
103 3300037466 Ga0395898_0131074 Ga0395898_0131074_1069_2082 283
104 3300037471 Ga0395905_0002805 Ga0395905_0002805_15780_16793 283
105 3300037471 Ga0395905_0203979 Ga0395905_0203979_914_1834 283
106 3300038443 Ga0395901_0000001 Ga0395901_0000001_680549_681562 283
107 3300038443 Ga0395901_0058971 Ga0395901_0058971_2885_3808 283
108 3300046516 Ga0495628_0047678 Ga0495628_0047678_1523_2536 283
109 3300046543 Ga0495645_0032199 Ga0495645_0032199_1820_2833 283
110 3300046678 Ga0495599_0191351 Ga0495599_0191351_74_1087 283
111 3300048918 Ga0496115_0007576 Ga0496115_0007576_2599_3615 283
112 3300048918 Ga0496115_0275851 Ga0496115_0275851_97_1029 283
113 3300049571 Ga0501034_0136579 Ga0501034_0136579_1192_2112 283
114 3300053077 Ga0495601_0078107 Ga0495601_0078107_826_1839 283
115 3300053087 Ga0500643_003880 Ga0500643_003880_101_1021 283
116 3300053136 Ga0500559_0000023 Ga0500559_0000023_61667_62593 283
117 3300053177 Ga0500636_0004725 Ga0500636_0004725_6710_7636 283
118 3300003794 Ga0055531_10037276 Ga0055531_100372761 284
119 3300005334 Ga0068869_100157826 Ga0068869_1001578262 284
120 3300005530 Ga0070679_100022320 Ga0070679_1000223201 284
121 3300005563 Ga0068855_100073958 Ga0068855_1000739584 284
122 3300005618 Ga0068864_100000265 Ga0068864_10000026532 284
123 3300005841 Ga0068863_100010094 Ga0068863_1000100943 284
124 3300005842 Ga0068858_100000408 Ga0068858_10000040820 284
125 3300009177 Ga0105248_10023453 Ga0105248_100234532 284
126 3300009551 Ga0105238_10098777 Ga0105238_100987772 284
127 3300025304 Ga0209257_1001000 Ga0209257_100100018 284
128 3300025912 Ga0207707_10217306 Ga0207707_102173061 284
129 3300025913 Ga0207695_10008114 Ga0207695_1000811414 284
130 3300025924 Ga0207694_10050626 Ga0207694_100506264 284
131 3300025941 Ga0207711_10013936 Ga0207711_100139368 284
132 3300025949 Ga0207667_10102254 Ga0207667_101022542 284
133 3300026035 Ga0207703_10000171 Ga0207703_1000017127 284
134 3300026088 Ga0207641_10000007 Ga0207641_10000007367 284
135 3300026095 Ga0207676_10000268 Ga0207676_1000026833 284
136 3300037312 Ga0395899_0131365 Ga0395899_0131365_151_1074 284
137 3300037312 Ga0395899_0169965 Ga0395899_0169965_462_1385 284
138 3300037418 Ga0395900_0391568 Ga0395900_0391568_195_1118 284
139 3300048905 Ga0496102_0008809 Ga0496102_0008809_163_1086 284
140 3300048920 Ga0496117_0169281 Ga0496117_0169281_70_993 284
141 3300048921 Ga0496118_0007829 Ga0496118_0007829_10006_10929 284
142 3300048922 Ga0496119_0024404 Ga0496119_0024404_1220_2143 284
143 3300048924 Ga0496121_0000467 Ga0496121_0000467_28699_29622 284
144 3300049581 Ga0501047_0165506 Ga0501047_0165506_910_1860 284
145 3300050491 nmdc:mga00v17_756_c1 nmdc:mga00v17_756_c1_11190_12116 284
146 3300050495 nmdc:mga04h51_8230_c1 nmdc:mga04h51_8230_c1_1027_1953 284
147 3300050496 nmdc:mga07m45_92033_c1 nmdc:mga07m45_92033_c1_59_985 284
148 3300053087 Ga0500643_004744 Ga0500643_004744_1934_2851 284
149 3300025921 Ga0207652_10120360 Ga0207652_101203602 285
150 3300028786 Ga0307517_10010060 Ga0307517_100100603 285
151 3300033180 Ga0307510_10095199 Ga0307510_100951993 285
152 3300021384 Ga0213876_10000116 Ga0213876_1000011683 286
153 3300037853 Ga0436364_1514724 Ga0436364_1514724_57_1025 286
154 3300039437 Ga0436365_1226135 Ga0436365_1226135_22119_23087 286
155 3300046684 Ga0495669_0000141 Ga0495669_0000141_38523_39458 286
156 3300046694 Ga0495649_0175227 Ga0495649_0175227_116_1051 286
157 3300053136 Ga0500559_0000046 Ga0500559_0000046_28655_29593 286
158 3300047472 Ga0495686_0000049 Ga0495686_0000049_13713_14687 291
159 3300006042 Ga0075368_10012859 Ga0075368_100128592 296
160 3300006051 Ga0075364_10001656 Ga0075364_1000165610 296
161 3300006178 Ga0075367_10019030 Ga0075367_100190306 296
162 3300006353 Ga0075370_10069171 Ga0075370_100691712 296
163 3300027866 Ga0209813_10010771 Ga0209813_100107713 296
164 3300003791 Ga0055530_10000597 Ga0055530_1000059728 302
165 3300053156 Ga0500622_0013304 Ga0500622_0013304_2587_3651 302

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01040

UbiA

UbiA prenyltransferase family

41

317

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
4tq3-assembly1.cif.gz_A structure of a ubia homolog from archaeoglobus fulgidus bound to gpp and mg2+ 0.6942 44 292
4tq5-assembly1.cif.gz_A structure of a ubia homolog from archaeoglobus fulgidus 0.6852 44 301
4tq4-assembly3.cif.gz_C structure of a ubia homolog from archaeoglobus fulgidus bound to dmapp and mg2+ 0.6818 45 294
4od4-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.6713 59 302
4tq6-assembly2.cif.gz_B error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.6685 44 301
ID Description Score Start End Superfamily
af_Q8I7J4_75_223_1.10.357.140 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;UbiA prenyltransferase 0.8978 56 202 1.10.357.140
af_P0AGK1_23_169_1.10.357.140 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;UbiA prenyltransferase 0.8884 56 202 1.10.357.140
af_Q54U71_181_332_1.10.357.140 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;UbiA prenyltransferase 0.8834 56 201 1.10.357.140
af_Q8I7J4_75_223_1.10.357.140 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;UbiA prenyltransferase 0.8749 56 202 1.10.357.140
af_Q4D2X9_90_250_1.10.357.140 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;UbiA prenyltransferase 0.8684 58 204 1.10.357.140
ID Description Score Start End GO Terms
AF-A0A136K7M9-F1-model_v4 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.-) 0.954 123 266 GO:0005886
GO:0006744
GO:0008412
AF-A0A7K9HWQ0-F1-model_v4 COQ2 protein 0.9204 36 225 GO:0004659
GO:0005743
GO:0006744
AF-A0A2E1JLI9-F1-model_v4 4-hydroxybenzoate octaprenyltransferase 0.9161 44 265 GO:0005886
GO:0006744
GO:0016765
AF-A0A529XLA9-F1-model_v4 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.39) 0.9158 79 254 GO:0005886
GO:0006744
GO:0008412
AF-A0A7Y8F7G2-F1-model_v4 4-hydroxybenzoate octaprenyltransferase 0.9125 22 260 GO:0005886
GO:0006744
GO:0016765

Feature Viewer

pLDDT pTM Quality
77.3 0.74 High
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Predicted Structure (AlphaFold2)

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