F245976

General Info

Members Datasets Scaffolds Average Seq Length
165 126 330 281

Family's Representative Sequence

Representative Sequence 3300009036|Ga0105244_10080642|Ga0105244_100806422
Length 320
Sequence MGSVFFSAVRSAQALDGTIAQRGRWRFDSKHNKHDQEGAHMKTELIHSLTNTFEAHAQRTKSGVEFWLARDVQHLLGYSKWDNFLNVVTKAKTACEVSGHAVADHFADVGKMVDLGSGSQREIDDIMLTRYACYLIAQNGDPKKQEIAFAQTYFAVQTRRAELIEQRLLDAERVSARVKLTATEKELSDVIFEQTGGNQDFGIIRSKGDQALFGKSTQAMKAQWNVPDSRPLADFAPTIVLKAKDFAAEITIFNSRQHALDSERAISREHVNNNEAVRKTLLGRGIRPEGLPAAEDVKKVERRLMSEDKKHAKKPDALDI

Samples

Sample ID Description Type Environment
1 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
2 2162886006 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v1 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
5 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
6 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
7 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
13 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
30 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
35 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
36 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
42 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
45 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
46 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
47 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
51 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
52 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
53 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
72 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
73 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
74 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
75 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
76 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
77 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
78 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
79 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
80 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
81 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
82 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
83 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
84 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
85 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
86 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
87 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
88 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
89 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
90 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
91 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
92 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
93 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
94 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
95 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
106 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
107 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
109 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
110 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
111 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
112 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
113 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
114 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
115 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
116 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
117 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
118 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
119 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
120 2511231035 Pantoea sp. GM01 Isolate Rhizosphere
121 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
122 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
123 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
124 2738541278 Niastella sp. CF465 Isolate Unclassified
125 2871720351 Chryseobacterium sp. KLBC 52 Isolate Nodule
126 8016733728 Pantoea sp. SORGH_AS 659 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.15
Metatranscriptomes 0
Isolates 4.85

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.94
Nodule 0.61
Rhizoplane 1.21
Rhizosphere 75.76
Stem 0
Stem Tuber 0
Unclassified 6.06

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105244_10080642 3300009036 Bacteria 1611
2 SwRhRL3b_contig_4077176 2162886006 Bacteria 2748
3 rootH2_10049783 3300003320 Bacteria 3289
4 JGI25160J50197_1016348 3300003354 Bacteria 2394
5 Ga0055542_1001478 3300003762 Bacteria 11546
6 Ga0055526_1008147 3300003771 Bacteria 5279
7 Ga0065707_10081860 3300005295 Bacteria 33219
8 Ga0070658_10046136 3300005327 Bacteria 3526
9 Ga0070666_10010657 3300005335 Bacteria 5754
10 Ga0070680_100030264 3300005336 Bacteria 4350
11 Ga0070660_100001329 3300005339 Bacteria 16807
12 Ga0070660_100214753 3300005339 Bacteria 1562
13 Ga0070687_100066981 3300005343 Bacteria 1915
14 Ga0070661_100089921 3300005344 Bacteria 2273
15 Ga0070675_100196371 3300005354 Bacteria 1750
16 Ga0070659_100048276 3300005366 Bacteria 3343
17 Ga0070667_100022596 3300005367 Bacteria 5215
18 Ga0070662_100027917 3300005457 Bacteria 3924
19 Ga0070681_10024889 3300005458 Bacteria 6023
20 Ga0070681_10262287 3300005458 Bacteria 1640
21 Ga0070707_100000514 3300005468 Bacteria 38570
22 Ga0070699_100093866 3300005518 Bacteria 2626
23 Ga0070679_100315538 3300005530 Bacteria 1513
24 Ga0068853_100156675 3300005539 Bacteria 2052
25 Ga0068855_100032656 3300005563 Bacteria 6214
26 Ga0068855_100309179 3300005563 Bacteria 1749
27 Ga0070664_100059006 3300005564 Bacteria 3264
28 Ga0068857_100049849 3300005577 Bacteria 3715
29 Ga0068854_100064008 3300005578 Bacteria 2671
30 Ga0068852_100127718 3300005616 Unclassified 2337
31 Ga0068859_100019779 3300005617 Bacteria 6758
32 Ga0068862_100052292 3300005844 Bacteria 3495
33 Ga0075363_100129090 3300006048 Bacteria 1417
34 Ga0097620_100019779 3300006931 Bacteria 6758
35 Ga0105250_10048465 3300009092 Bacteria 1704
36 Ga0105250_10061008 3300009092 Bacteria 1516
37 Ga0105240_10028962 3300009093 Bacteria 7223
38 Ga0105248_10073114 3300009177 Bacteria 3853
39 Ga0105249_10189100 3300009553 Unclassified 2008
40 Ga0105249_10232154 3300009553 Bacteria 1820
41 Ga0105246_10034398 3300011119 Bacteria 3376
42 Ga0157373_10114487 3300013100 Bacteria 1896
43 Ga0157371_10002462 3300013102 Bacteria 17638
44 Ga0157370_10001331 3300013104 Bacteria 30668
45 Ga0157370_10015590 3300013104 Bacteria 7723
46 Ga0157370_10379123 3300013104 Bacteria 1303
47 Ga0157369_10003124 3300013105 Bacteria 19792
48 Ga0157369_10060323 3300013105 Bacteria 4090
49 Ga0157378_10203311 3300013297 Bacteria 1874
50 Ga0163162_10008884 3300013306 Bacteria 9772
51 Ga0157372_10144758 3300013307 Bacteria 2741
52 Ga0157375_10062025 3300013308 Bacteria 3713
53 Ga0157375_10168420 3300013308 Bacteria 2337
54 Ga0157375_10193257 3300013308 Bacteria 2190
55 Ga0163161_10025324 3300017792 Bacteria 4199
56 Ga0163161_10190691 3300017792 Bacteria 1576
57 Ga0209436_100457 3300025208 Bacteria 18206
58 Ga0209258_100160 3300025242 Bacteria 154101
59 Ga0209148_1000153 3300025254 Bacteria 147028
60 Ga0209673_1044060 3300025273 Bacteria 1239
61 Ga0209130_1001580 3300025284 Bacteria 14338
62 Ga0209564_1001929 3300025295 Bacteria 18515
63 Ga0207426_1000024 3300025302 Bacteria 534075
64 Ga0207696_1031554 3300025711 Bacteria 1602
65 Ga0207696_1045143 3300025711 Bacteria 1275
66 Ga0207707_10072901 3300025912 Bacteria 2994
67 Ga0207660_10071364 3300025917 Bacteria 2527
68 Ga0207657_10250582 3300025919 Bacteria 1412
69 Ga0207652_10100393 3300025921 Bacteria 2555
70 Ga0207646_10000010 3300025922 Bacteria 421163
71 Ga0207690_10046844 3300025932 Bacteria 2866
72 Ga0207706_10008714 3300025933 Bacteria 9344
73 Ga0207711_10010340 3300025941 Bacteria 7752
74 Ga0207679_10138068 3300025945 Bacteria 1966
75 Ga0207667_10014687 3300025949 Bacteria 8913
76 Ga0207667_10284614 3300025949 Unclassified 1689
77 Ga0207712_10134993 3300025961 Unclassified 1885
78 Ga0207640_10099924 3300025981 Bacteria 2032
79 Ga0207658_10022905 3300025986 Bacteria 4353
80 Ga0207639_10379656 3300026041 Bacteria 1269
81 Ga0207678_10008859 3300026067 Bacteria 8861
82 Ga0207702_10262780 3300026078 Unclassified 1626
83 Ga0207702_10439936 3300026078 Bacteria 1263
84 Ga0207674_10001823 3300026116 Bacteria 27191
85 Ga0207674_10306795 3300026116 Bacteria 1536
86 Ga0307515_10063830 3300028794 Bacteria 5162
87 Ga0316183_1006754 3300030742 Bacteria 30693
88 Ga0316181_1003116 3300030744 Bacteria 23661
89 Ga0307513_10367429 3300031456 Bacteria 1182
90 Ga0307509_10000044 3300031507 Bacteria 176718
91 Ga0307509_10089527 3300031507 Bacteria 3156
92 Ga0307516_10002629 3300031730 Bacteria 23801
93 Ga0307412_10000013 3300031911 Bacteria 365239
94 Ga0451795_0847000 3300041456 Bacteria 2349
95 Ga0451837_1861451 3300041494 Bacteria 1366
96 Ga0451855_0525440 3300041511 Bacteria 3183
97 Ga0451577_0010371 3300042876 Bacteria 8914
98 Ga0451577_0039053 3300042876 Bacteria 4266
99 Ga0451577_0056603 3300042876 Bacteria 3498
100 Ga0451577_0276336 3300042876 Bacteria 1521
101 Ga0453683_0001127 3300044673 Bacteria 24394
102 Ga0453683_0003308 3300044673 Bacteria 11920
103 Ga0453683_0013514 3300044673 Bacteria 5327
104 Ga0453683_0233612 3300044673 Bacteria 1170
105 Ga0453683_0237206 3300044673 Bacteria 1161
106 Ga0453684_0009133 3300044712 Bacteria 17457
107 Ga0453684_0020794 3300044712 Bacteria 9864
108 Ga0453684_0071816 3300044712 Unclassified 4374
109 Ga0453684_0135840 3300044712 Bacteria 2945
110 Ga0453684_0496352 3300044712 Bacteria 1352
111 Ga0451576_0003098 3300045051 Bacteria 23326
112 Ga0451576_0022272 3300045051 Bacteria 6873
113 Ga0451576_0098871 3300045051 Bacteria 3035
114 Ga0451576_0537761 3300045051 Bacteria 1228
115 Ga0495627_005933 3300046453 Bacteria 4853
116 Ga0495638_0026184 3300046460 Bacteria 3783
117 Ga0495643_0021221 3300046522 Bacteria 3730
118 Ga0495683_0125299 3300047323 Unclassified 1216
119 Ga0495687_000119 3300047443 Bacteria 121587
120 Ga0496100_0067810 3300048903 Bacteria 2371
121 Ga0496123_0010819 3300048926 Bacteria 8004
122 Ga0496124_0242788 3300048927 Bacteria 1338
123 Ga0496125_0000184 3300048928 Bacteria 137135
124 Ga0496126_0391991 3300048929 Bacteria 1128
125 Ga0501031_0030006 3300049568 Bacteria 3547
126 Ga0501032_0012402 3300049569 Bacteria 6091
127 Ga0501032_0054171 3300049569 Bacteria 2700
128 Ga0501033_0008993 3300049570 Bacteria 7711
129 Ga0501034_0012165 3300049571 Bacteria 8899
130 Ga0501034_0042145 3300049571 Bacteria 4620
131 Ga0501036_0035497 3300049572 Bacteria 4219
132 Ga0501037_0014147 3300049573 Bacteria 5874
133 Ga0501037_0015440 3300049573 Bacteria 5620
134 Ga0501038_0023518 3300049574 Bacteria 5507
135 Ga0501039_0052143 3300049575 Bacteria 3165
136 Ga0501039_0058798 3300049575 Bacteria 2978
137 Ga0501043_0017592 3300049579 Bacteria 5605
138 Ga0501043_0066263 3300049579 Bacteria 2836
139 Ga0501047_0026245 3300049581 Bacteria 5604
140 Ga0501073_0039017 3300049589 Bacteria 3366
141 Ga0501080_0024479 3300049742 Bacteria 5595
142 Ga0501035_0017057 3300049822 Bacteria 6691
143 Ga0501035_0020110 3300049822 Bacteria 6132
144 Ga0501044_0034880 3300049823 Bacteria 5272
145 Ga0501044_0407052 3300049823 Bacteria 1272
146 nmdc:mga03n38_106779_c1 3300050490 Bacteria 1358
147 nmdc:mga07m45_201509_c1 3300050496 Bacteria 1158
148 Ga0500644_0000567 3300053088 Bacteria 14501
149 Ga0500644_0114716 3300053088 Bacteria 1042
150 Ga0500646_0002118 3300053090 Bacteria 5184
151 Ga0500646_0059458 3300053090 Unclassified 1121
152 Ga0500583_0000126 3300053092 Bacteria 35190
153 Ga0500569_082313 3300053109 Unclassified 1031
154 Ga0500658_0006718 3300053134 Bacteria 4257
155 Ga0500577_0145769 3300053142 Unclassified 1001
156 Ga0500590_089170 3300053148 Bacteria 1501
157 Ga0500645_035200 3300053730 Bacteria 1492
158 2511231578 2511231000 Bacteria 4488346
159 2511435240 2511231035 Bacteria 5341610
160 2585143123 2582581278 Bacteria 5296881
161 2585157887 2582581281 Bacteria 4487904
162 2585162187 2582581282 Bacteria 4495830
163 2738728690 2738541278 Bacteria 9755573
164 2871723097 2871720351 Bacteria 4862476
165 8016734008 8016733728 Bacteria 5274317
166 Ga0105244_10080642
167 SwRhRL3b_contig_4077176
168 rootH2_10049783
169 JGI25160J50197_1016348
170 Ga0055542_1001478
171 Ga0055526_1008147
172 Ga0065707_10081860
173 Ga0070658_10046136
174 Ga0070666_10010657
175 Ga0070680_100030264
176 Ga0070660_100001329
177 Ga0070660_100214753
178 Ga0070687_100066981
179 Ga0070661_100089921
180 Ga0070675_100196371
181 Ga0070659_100048276
182 Ga0070667_100022596
183 Ga0070662_100027917
184 Ga0070681_10024889
185 Ga0070681_10262287
186 Ga0070707_100000514
187 Ga0070699_100093866
188 Ga0070679_100315538
189 Ga0068853_100156675
190 Ga0068855_100032656
191 Ga0068855_100309179
192 Ga0070664_100059006
193 Ga0068857_100049849
194 Ga0068854_100064008
195 Ga0068852_100127718
196 Ga0068859_100019779
197 Ga0068862_100052292
198 Ga0075363_100129090
199 Ga0097620_100019779
200 Ga0105250_10048465
201 Ga0105250_10061008
202 Ga0105240_10028962
203 Ga0105248_10073114
204 Ga0105249_10189100
205 Ga0105249_10232154
206 Ga0105246_10034398
207 Ga0157373_10114487
208 Ga0157371_10002462
209 Ga0157370_10001331
210 Ga0157370_10015590
211 Ga0157370_10379123
212 Ga0157369_10003124
213 Ga0157369_10060323
214 Ga0157378_10203311
215 Ga0163162_10008884
216 Ga0157372_10144758
217 Ga0157375_10062025
218 Ga0157375_10168420
219 Ga0157375_10193257
220 Ga0163161_10025324
221 Ga0163161_10190691
222 Ga0209436_100457
223 Ga0209258_100160
224 Ga0209148_1000153
225 Ga0209673_1044060
226 Ga0209130_1001580
227 Ga0209564_1001929
228 Ga0207426_1000024
229 Ga0207696_1031554
230 Ga0207696_1045143
231 Ga0207707_10072901
232 Ga0207660_10071364
233 Ga0207657_10250582
234 Ga0207652_10100393
235 Ga0207646_10000010
236 Ga0207690_10046844
237 Ga0207706_10008714
238 Ga0207711_10010340
239 Ga0207679_10138068
240 Ga0207667_10014687
241 Ga0207667_10284614
242 Ga0207712_10134993
243 Ga0207640_10099924
244 Ga0207658_10022905
245 Ga0207639_10379656
246 Ga0207678_10008859
247 Ga0207702_10262780
248 Ga0207702_10439936
249 Ga0207674_10001823
250 Ga0207674_10306795
251 Ga0307515_10063830
252 Ga0316183_1006754
253 Ga0316181_1003116
254 Ga0307513_10367429
255 Ga0307509_10000044
256 Ga0307509_10089527
257 Ga0307516_10002629
258 Ga0307412_10000013
259 Ga0451795_0847000
260 Ga0451837_1861451
261 Ga0451855_0525440
262 Ga0451577_0010371
263 Ga0451577_0039053
264 Ga0451577_0056603
265 Ga0451577_0276336
266 Ga0453683_0001127
267 Ga0453683_0003308
268 Ga0453683_0013514
269 Ga0453683_0233612
270 Ga0453683_0237206
271 Ga0453684_0009133
272 Ga0453684_0020794
273 Ga0453684_0071816
274 Ga0453684_0135840
275 Ga0453684_0496352
276 Ga0451576_0003098
277 Ga0451576_0022272
278 Ga0451576_0098871
279 Ga0451576_0537761
280 Ga0495627_005933
281 Ga0495638_0026184
282 Ga0495643_0021221
283 Ga0495683_0125299
284 Ga0495687_000119
285 Ga0496100_0067810
286 Ga0496123_0010819
287 Ga0496124_0242788
288 Ga0496125_0000184
289 Ga0496126_0391991
290 Ga0501031_0030006
291 Ga0501032_0012402
292 Ga0501032_0054171
293 Ga0501033_0008993
294 Ga0501034_0012165
295 Ga0501034_0042145
296 Ga0501036_0035497
297 Ga0501037_0014147
298 Ga0501037_0015440
299 Ga0501038_0023518
300 Ga0501039_0052143
301 Ga0501039_0058798
302 Ga0501043_0017592
303 Ga0501043_0066263
304 Ga0501047_0026245
305 Ga0501073_0039017
306 Ga0501080_0024479
307 Ga0501035_0017057
308 Ga0501035_0020110
309 Ga0501044_0034880
310 Ga0501044_0407052
311 nmdc:mga03n38_106779_c1
312 nmdc:mga07m45_201509_c1
313 Ga0500644_0000567
314 Ga0500644_0114716
315 Ga0500646_0002118
316 Ga0500646_0059458
317 Ga0500583_0000126
318 Ga0500569_082313
319 Ga0500658_0006718
320 Ga0500577_0145769
321 Ga0500590_089170
322 Ga0500645_035200
323 2511231578
324 2511435240
325 2585143123
326 2585157887
327 2585162187
328 2738728690
329 2871723097
330 8016734008

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02498

Bro-N

BRO family, N-terminal domain

57

155

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
2z7c-assembly1.cif.gz_A crystal structure of chromatin protein alba from hyperthermophilic archaeon pyrococcus horikoshii 0.6202 65 88
2bky-assembly1.cif.gz_A crystal structure of the alba1:alba2 heterodimer from sulfolobus solfataricus 0.6007 65 88
5jty-assembly1.cif.gz_B glutamate- and dcka-bound glun1/glun2a agonist binding domains with mpx-007 0.6006 65 97
2ofz-assembly1.cif.gz_A ultrahigh resolution crystal structure of rna binding domain of sars nucleopcapsid (n protein) at 1.1 angstrom resolution in monoclinic form. 0.5871 66 89
7wzo-assembly1.cif.gz_A crystal structure of the sars-cov-2 nucleocapsid protein n-terminal domain in complex with ubl1 0.5742 66 89
ID Description Score Start End Superfamily
af_Q2FWQ0_1_118_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7248 17 121 1.10.10.10
af_A0A1D6I1A0_1_161_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.7174 198 242 1.20.1070.10
af_Q17924_1_127_2.10.60.10 Mainly Beta;Ribbon;CD59;CD59 0.6638 63 88 2.10.60.10
af_A0A4V0IK40_52_239_2.70.170.10 Mainly Beta;Distorted Sandwich;Acetylcholine Binding Protein; Chain: A,;Neurotransmitter-gated ion-channel ligand-binding domain 0.6536 66 89 2.70.170.10
af_Q8K4Q7_1_115_2.30.29.30 Mainly Beta;Roll;PH-domain like;Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.6471 68 89 2.30.29.30
ID Description Score Start End GO Terms
AF-A0A380N6Y5-F1-model_v4 deleted 0.9794 12 126
AF-S3ZCE9-F1-model_v4 Bro-N domain-containing protein 0.9687 12 114
AF-A0A349UIZ6-F1-model_v4 Bro-N domain-containing protein 0.966 1 119
AF-A0A349NHD9-F1-model_v4 DNA damage-inducible protein D 0.9636 113 275
AF-K2A4L6-F1-model_v4 Bro-N domain-containing protein 0.9628 1 113

Map