F242443
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 163 | 121 | 326 | 146 |
Family's Representative Sequence
| Representative Sequence | 3300048905|Ga0496102_0096899|Ga0496102_0096899_181_645 |
| Length | 140 |
| Sequence | MRVLVLNGPNLGRLGVREPAVYGSTTYAELEALCVSGGRELLLRWLHAAADEAIPVVLNAGAWTHTSVAIGDACAMLTAPLIEVHISNVHKREAFRHHSFISAHATGVIVGLGVEGYVLALSWLSSAGQPVDSLAGPPSG |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 2 | 3300001990 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 | Metagenome | Rhizosphere |
| 3 | 3300003911 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 4 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 5 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 8 | 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 10 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 12 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 13 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 14 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 15 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 16 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 17 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300006353 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 | Metagenome | Endosphere |
| 19 | 3300006852 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Metagenome | Rhizosphere |
| 20 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 21 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 22 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 23 | 3300009984 | Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_127 metaG | Metagenome | Rhizosphere |
| 24 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 25 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 26 | 3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Metagenome | Rhizosphere |
| 27 | 3300020069 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 28 | 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 29 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 30 | 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 32 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 44 | 3300030521 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM | Metagenome | Unclassified |
| 45 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 46 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 47 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 48 | 3300031838 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM | Metagenome | Unclassified |
| 49 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 50 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 51 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 52 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 53 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 54 | 3300041451 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG | Metagenome | Rhizoplane |
| 55 | 3300041460 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG | Metagenome | Rhizoplane |
| 56 | 3300041512 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG | Metagenome | Unclassified |
| 57 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 58 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 59 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 60 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 61 | 3300044706 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R | Metagenome | Rhizosphere |
| 62 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 63 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 64 | 3300044901 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R | Metagenome | Rhizosphere |
| 65 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 66 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 67 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 68 | 3300048906 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 | Metagenome | Rhizoplane |
| 69 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 70 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 71 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 72 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 73 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 74 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 75 | 3300049568 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 76 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 77 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 78 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 79 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 80 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 81 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 82 | 3300049577 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 83 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 84 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 85 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 86 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 87 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 88 | 3300049585 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 | Metagenome | Rhizosphere |
| 89 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 90 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 91 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 92 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 93 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 94 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 95 | 3300049593 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 | Metagenome | Rhizosphere |
| 96 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 97 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 98 | 3300049743 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 | Metagenome | Rhizosphere |
| 99 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 100 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 101 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 102 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 103 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 104 | 3300050515 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation | Metagenome | Rhizosphere |
| 105 | 3300053088 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere | Metagenome | Endosphere |
| 106 | 3300053096 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere | Metagenome | Endosphere |
| 107 | 3300053133 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere | Metagenome | Endosphere |
| 108 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 109 | 3300053142 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere | Metagenome | Endosphere |
| 110 | 3300053147 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere | Metagenome | Endosphere |
| 111 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 112 | 3300061734 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) | Metagenome | Rhizosphere |
| 113 | 2515154088 | Salinispora arenicola CNT800 | Isolate | Rhizosphere |
| 114 | 2515154129 | Salinispora pacifica CNS103 | Isolate | Rhizosphere |
| 115 | 2515154137 | Salinispora arenicola CNX482 | Isolate | Rhizosphere |
| 116 | 2515154202 | Salinispora pacifica CNT084 | Isolate | Rhizosphere |
| 117 | 2515154203 | Salinispora arenicola CNR921 | Isolate | Rhizosphere |
| 118 | 2558860112 | Pseudonocardia acaciae DSM 45401 | Isolate | Unclassified |
| 119 | 2643221679 | Angustibacter sp. Root456 | Isolate | Unclassified |
| 120 | 2643221961 | Aeromicrobium sp. Root236 | Isolate | Unclassified |
| 121 | 2643221962 | Aeromicrobium sp. Root344 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 92.64 |
| Metatranscriptomes | 1.84 |
| Isolates | 5.52 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 4.29 |
| Nodule | 0 |
| Rhizoplane | 4.29 |
| Rhizosphere | 82.21 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0496102_0096899 | 3300048905 | Bacteria | 2735 |
| 2 | JGI24737J22298_10025571 | 3300001990 | Bacteria | 1867 |
| 3 | JGI25405J52794_10060541 | 3300003911 | Bacteria | 818 |
| 4 | Ga0070682_101317105 | 3300005337 | Bacteria | 614 |
| 5 | Ga0070668_100000250 | 3300005347 | Bacteria | 35693 |
| 6 | Ga0070714_100435367 | 3300005435 | Bacteria | 1244 |
| 7 | Ga0070706_100687698 | 3300005467 | Bacteria | 949 |
| 8 | Ga0070699_101072441 | 3300005518 | Bacteria | 739 |
| 9 | Ga0070684_100626350 | 3300005535 | Bacteria | 1001 |
| 10 | Ga0070665_100328874 | 3300005548 | Bacteria | 1533 |
| 11 | Ga0070665_101294659 | 3300005548 | Bacteria | 739 |
| 12 | Ga0068857_100807749 | 3300005577 | Bacteria | 896 |
| 13 | Ga0068852_100893677 | 3300005616 | Bacteria | 905 |
| 14 | Ga0068852_101573329 | 3300005616 | Bacteria | 680 |
| 15 | Ga0068859_100021731 | 3300005617 | Bacteria | 6437 |
| 16 | Ga0068859_100707645 | 3300005617 | Bacteria | 1098 |
| 17 | Ga0068862_100000021 | 3300005844 | Bacteria | 218035 |
| 18 | Ga0068862_100165275 | 3300005844 | Bacteria | 1978 |
| 19 | Ga0081455_10003790 | 3300005937 | Bacteria | 17256 |
| 20 | Ga0081539_10001412 | 3300005985 | Bacteria | 41361 |
| 21 | Ga0070717_10386182 | 3300006028 | Bacteria | 1256 |
| 22 | Ga0075370_10177488 | 3300006353 | Bacteria | 1253 |
| 23 | Ga0075433_10856526 | 3300006852 | Bacteria | 793 |
| 24 | Ga0097620_100021730 | 3300006931 | Bacteria | 6437 |
| 25 | Ga0097620_100707507 | 3300006931 | Bacteria | 1098 |
| 26 | Ga0114129_10868140 | 3300009147 | Bacteria | 1146 |
| 27 | Ga0105249_10065707 | 3300009553 | Bacteria | 3338 |
| 28 | Ga0105029_104332 | 3300009984 | Bacteria | 974 |
| 29 | Ga0157369_10030313 | 3300013105 | Bacteria | 5966 |
| 30 | Ga0157369_10194806 | 3300013105 | Bacteria | 2128 |
| 31 | Ga0163163_10004278 | 3300014325 | Bacteria | 12165 |
| 32 | Ga0182008_10169523 | 3300014497 | Bacteria | 1102 |
| 33 | Ga0197907_10456585 | 3300020069 | Bacteria | 1078 |
| 34 | Ga0206353_10526732 | 3300020082 | Bacteria | 1735 |
| 35 | Ga0206353_11978694 | 3300020082 | Bacteria | 2131 |
| 36 | Ga0207647_10107406 | 3300025904 | Bacteria | 1651 |
| 37 | Ga0207647_10241228 | 3300025904 | Bacteria | 1038 |
| 38 | Ga0207684_10517857 | 3300025910 | Bacteria | 1022 |
| 39 | Ga0207707_10946208 | 3300025912 | Bacteria | 710 |
| 40 | Ga0207652_10288855 | 3300025921 | Bacteria | 1480 |
| 41 | Ga0207664_11692043 | 3300025929 | Bacteria | 555 |
| 42 | Ga0207661_10176284 | 3300025944 | Bacteria | 1864 |
| 43 | Ga0207712_10035833 | 3300025961 | Bacteria | 3374 |
| 44 | Ga0207668_10001017 | 3300025972 | Bacteria | 16785 |
| 45 | Ga0207678_10399478 | 3300026067 | Bacteria | 1190 |
| 46 | Ga0207678_10403538 | 3300026067 | Bacteria | 1184 |
| 47 | Ga0207676_10526889 | 3300026095 | Bacteria | 1126 |
| 48 | Ga0207674_10160412 | 3300026116 | Bacteria | 2203 |
| 49 | Ga0207675_100393477 | 3300026118 | Bacteria | 1365 |
| 50 | Ga0207675_100855964 | 3300026118 | Bacteria | 924 |
| 51 | Ga0268266_10280123 | 3300028379 | Bacteria | 1550 |
| 52 | Ga0268265_10000034 | 3300028380 | Bacteria | 218695 |
| 53 | Ga0268265_10114884 | 3300028380 | Bacteria | 2205 |
| 54 | Ga0307515_10107650 | 3300028794 | Bacteria | 3293 |
| 55 | Ga0307511_10143068 | 3300030521 | Bacteria | 1398 |
| 56 | Ga0307513_10322585 | 3300031456 | Bacteria | 1302 |
| 57 | Ga0307408_100826177 | 3300031548 | Bacteria | 843 |
| 58 | Ga0307413_10013652 | 3300031824 | Bacteria | 4093 |
| 59 | Ga0307518_10302025 | 3300031838 | Bacteria | 972 |
| 60 | Ga0307409_100019554 | 3300031995 | Bacteria | 4590 |
| 61 | Ga0307409_100692288 | 3300031995 | Bacteria | 1018 |
| 62 | Ga0307416_102284058 | 3300032002 | Bacteria | 641 |
| 63 | Ga0307414_10244090 | 3300032004 | Bacteria | 1489 |
| 64 | Ga0307411_10295844 | 3300032005 | Bacteria | 1296 |
| 65 | Ga0307415_101306273 | 3300032126 | Bacteria | 687 |
| 66 | Ga0451791_0466544 | 3300041451 | Bacteria | 673 |
| 67 | Ga0451802_0893744 | 3300041460 | Bacteria | 541 |
| 68 | Ga0451802_0999209 | 3300041460 | Bacteria | 521 |
| 69 | Ga0451853_0607212 | 3300041512 | Bacteria | 4499 |
| 70 | Ga0466969_0094126 | 3300044656 | Bacteria | 1417 |
| 71 | Ga0466969_0153769 | 3300044656 | Bacteria | 1059 |
| 72 | Ga0466966_0004521 | 3300044684 | Bacteria | 9175 |
| 73 | Ga0466961_0003777 | 3300044693 | Bacteria | 9472 |
| 74 | Ga0466961_0020086 | 3300044693 | Bacteria | 4299 |
| 75 | Ga0466963_0054954 | 3300044694 | Bacteria | 2647 |
| 76 | Ga0466963_0145941 | 3300044694 | Bacteria | 1641 |
| 77 | Ga0466963_1262479 | 3300044694 | Bacteria | 519 |
| 78 | Ga0466964_0014296 | 3300044706 | Bacteria | 3018 |
| 79 | Ga0466964_0404453 | 3300044706 | Bacteria | 714 |
| 80 | Ga0466970_0124257 | 3300044765 | Bacteria | 1415 |
| 81 | Ga0466957_0205912 | 3300044842 | Bacteria | 1294 |
| 82 | Ga0466957_0276567 | 3300044842 | Bacteria | 1122 |
| 83 | Ga0466957_0379548 | 3300044842 | Bacteria | 964 |
| 84 | Ga0466960_0019248 | 3300044901 | Bacteria | 3005 |
| 85 | Ga0466959_0089737 | 3300045049 | Bacteria | 2208 |
| 86 | Ga0466959_0360456 | 3300045049 | Bacteria | 991 |
| 87 | Ga0466959_0508754 | 3300045049 | Bacteria | 814 |
| 88 | Ga0466958_0029887 | 3300045836 | Bacteria | 3234 |
| 89 | Ga0466958_0072647 | 3300045836 | Bacteria | 2107 |
| 90 | Ga0466958_0109728 | 3300045836 | Bacteria | 1722 |
| 91 | Ga0466958_0128772 | 3300045836 | Bacteria | 1588 |
| 92 | Ga0466958_0244080 | 3300045836 | Bacteria | 1148 |
| 93 | Ga0466967_0106514 | 3300045976 | Bacteria | 2570 |
| 94 | Ga0466967_0209936 | 3300045976 | Bacteria | 1846 |
| 95 | Ga0466967_0867582 | 3300045976 | Bacteria | 897 |
| 96 | Ga0466967_2450557 | 3300045976 | Bacteria | 517 |
| 97 | Ga0496102_0000233 | 3300048905 | Bacteria | 72853 |
| 98 | Ga0496103_0028226 | 3300048906 | Bacteria | 3404 |
| 99 | Ga0496105_0339214 | 3300048908 | Bacteria | 1202 |
| 100 | Ga0496118_0192096 | 3300048921 | Bacteria | 1220 |
| 101 | Ga0496119_0000521 | 3300048922 | Bacteria | 52243 |
| 102 | Ga0496120_0010653 | 3300048923 | Bacteria | 6390 |
| 103 | Ga0496121_0002251 | 3300048924 | Bacteria | 30080 |
| 104 | Ga0496126_0373784 | 3300048929 | Bacteria | 1162 |
| 105 | Ga0496126_0638017 | 3300048929 | Bacteria | 835 |
| 106 | Ga0501031_0021313 | 3300049568 | Bacteria | 4225 |
| 107 | Ga0501033_0144052 | 3300049570 | Bacteria | 1722 |
| 108 | Ga0501034_1059417 | 3300049571 | Bacteria | 693 |
| 109 | Ga0501036_0024374 | 3300049572 | Bacteria | 5099 |
| 110 | Ga0501037_0028108 | 3300049573 | Bacteria | 4154 |
| 111 | Ga0501037_0155071 | 3300049573 | Bacteria | 1635 |
| 112 | Ga0501038_0219028 | 3300049574 | Bacteria | 1519 |
| 113 | Ga0501039_0027998 | 3300049575 | Bacteria | 4335 |
| 114 | Ga0501039_0327707 | 3300049575 | Bacteria | 1203 |
| 115 | Ga0501041_0503652 | 3300049577 | Bacteria | 770 |
| 116 | Ga0501042_0121018 | 3300049578 | Bacteria | 1884 |
| 117 | Ga0501043_0033721 | 3300049579 | Bacteria | 4029 |
| 118 | Ga0501046_0069559 | 3300049580 | Bacteria | 2739 |
| 119 | Ga0501046_0247743 | 3300049580 | Bacteria | 1312 |
| 120 | Ga0501047_0105587 | 3300049581 | Bacteria | 2697 |
| 121 | Ga0501047_0302367 | 3300049581 | Bacteria | 1442 |
| 122 | Ga0501068_0218797 | 3300049584 | Bacteria | 1210 |
| 123 | Ga0501069_0078246 | 3300049585 | Bacteria | 1860 |
| 124 | Ga0501069_0147909 | 3300049585 | Bacteria | 1349 |
| 125 | Ga0501070_0158811 | 3300049586 | Bacteria | 1864 |
| 126 | Ga0501070_0422782 | 3300049586 | Bacteria | 1076 |
| 127 | Ga0501071_0111922 | 3300049587 | Bacteria | 2018 |
| 128 | Ga0501072_0015828 | 3300049588 | Bacteria | 5783 |
| 129 | Ga0501074_0028586 | 3300049590 | Bacteria | 4041 |
| 130 | Ga0501074_0056741 | 3300049590 | Bacteria | 2822 |
| 131 | Ga0501075_0167634 | 3300049591 | Bacteria | 1676 |
| 132 | Ga0501075_0236202 | 3300049591 | Bacteria | 1394 |
| 133 | Ga0501076_0306349 | 3300049592 | Bacteria | 1302 |
| 134 | Ga0501077_0061339 | 3300049593 | Bacteria | 2386 |
| 135 | Ga0501079_0403242 | 3300049741 | Bacteria | 1072 |
| 136 | Ga0501080_0210868 | 3300049742 | Bacteria | 1780 |
| 137 | Ga0501080_0265794 | 3300049742 | Bacteria | 1562 |
| 138 | Ga0501081_0068380 | 3300049743 | Bacteria | 2473 |
| 139 | Ga0501083_0404142 | 3300049744 | Bacteria | 889 |
| 140 | Ga0501035_0074707 | 3300049822 | Bacteria | 2998 |
| 141 | Ga0501035_0185220 | 3300049822 | Bacteria | 1792 |
| 142 | Ga0501035_1087437 | 3300049822 | Bacteria | 625 |
| 143 | Ga0501044_0157035 | 3300049823 | Bacteria | 2253 |
| 144 | Ga0501045_0106551 | 3300049824 | Bacteria | 2077 |
| 145 | nmdc:mga0n895_919654_c1 | 3300050512 | Bacteria | 859 |
| 146 | nmdc:mga0a205_655143_c1 | 3300050515 | Bacteria | 901 |
| 147 | Ga0500644_0009693 | 3300053088 | Bacteria | 2585 |
| 148 | Ga0500641_0017560 | 3300053096 | Bacteria | 2678 |
| 149 | Ga0500655_050310 | 3300053133 | Bacteria | 830 |
| 150 | Ga0500568_0001945 | 3300053139 | Bacteria | 12660 |
| 151 | Ga0500577_0280868 | 3300053142 | Bacteria | 725 |
| 152 | Ga0500589_137895 | 3300053147 | Bacteria | 1009 |
| 153 | Ga0501082_0351952 | 3300060353 | Bacteria | 1284 |
| 154 | Ga0530510_0086382 | 3300061734 | Bacteria | 2285 |
| 155 | 2515494866 | 2515154088 | Bacteria | 5526283 |
| 156 | 2515718870 | 2515154129 | Bacteria | 5584369 |
| 157 | 2515755529 | 2515154137 | Bacteria | 5711575 |
| 158 | 2516083082 | 2515154202 | Bacteria | 5471270 |
| 159 | 2516090168 | 2515154203 | Bacteria | 5458536 |
| 160 | 2558908352 | 2558860112 | Bacteria | 9931328 |
| 161 | 2644443988 | 2643221679 | Bacteria | 3839507 |
| 162 | 2645722169 | 2643221961 | Bacteria | 3919167 |
| 163 | 2645725054 | 2643221962 | Bacteria | 3874254 |
| 164 | Ga0496102_0096899 | |||
| 165 | JGI24737J22298_10025571 | |||
| 166 | JGI25405J52794_10060541 | |||
| 167 | Ga0070682_101317105 | |||
| 168 | Ga0070668_100000250 | |||
| 169 | Ga0070714_100435367 | |||
| 170 | Ga0070706_100687698 | |||
| 171 | Ga0070699_101072441 | |||
| 172 | Ga0070684_100626350 | |||
| 173 | Ga0070665_100328874 | |||
| 174 | Ga0070665_101294659 | |||
| 175 | Ga0068857_100807749 | |||
| 176 | Ga0068852_100893677 | |||
| 177 | Ga0068852_101573329 | |||
| 178 | Ga0068859_100021731 | |||
| 179 | Ga0068859_100707645 | |||
| 180 | Ga0068862_100000021 | |||
| 181 | Ga0068862_100165275 | |||
| 182 | Ga0081455_10003790 | |||
| 183 | Ga0081539_10001412 | |||
| 184 | Ga0070717_10386182 | |||
| 185 | Ga0075370_10177488 | |||
| 186 | Ga0075433_10856526 | |||
| 187 | Ga0097620_100021730 | |||
| 188 | Ga0097620_100707507 | |||
| 189 | Ga0114129_10868140 | |||
| 190 | Ga0105249_10065707 | |||
| 191 | Ga0105029_104332 | |||
| 192 | Ga0157369_10030313 | |||
| 193 | Ga0157369_10194806 | |||
| 194 | Ga0163163_10004278 | |||
| 195 | Ga0182008_10169523 | |||
| 196 | Ga0197907_10456585 | |||
| 197 | Ga0206353_10526732 | |||
| 198 | Ga0206353_11978694 | |||
| 199 | Ga0207647_10107406 | |||
| 200 | Ga0207647_10241228 | |||
| 201 | Ga0207684_10517857 | |||
| 202 | Ga0207707_10946208 | |||
| 203 | Ga0207652_10288855 | |||
| 204 | Ga0207664_11692043 | |||
| 205 | Ga0207661_10176284 | |||
| 206 | Ga0207712_10035833 | |||
| 207 | Ga0207668_10001017 | |||
| 208 | Ga0207678_10399478 | |||
| 209 | Ga0207678_10403538 | |||
| 210 | Ga0207676_10526889 | |||
| 211 | Ga0207674_10160412 | |||
| 212 | Ga0207675_100393477 | |||
| 213 | Ga0207675_100855964 | |||
| 214 | Ga0268266_10280123 | |||
| 215 | Ga0268265_10000034 | |||
| 216 | Ga0268265_10114884 | |||
| 217 | Ga0307515_10107650 | |||
| 218 | Ga0307511_10143068 | |||
| 219 | Ga0307513_10322585 | |||
| 220 | Ga0307408_100826177 | |||
| 221 | Ga0307413_10013652 | |||
| 222 | Ga0307518_10302025 | |||
| 223 | Ga0307409_100019554 | |||
| 224 | Ga0307409_100692288 | |||
| 225 | Ga0307416_102284058 | |||
| 226 | Ga0307414_10244090 | |||
| 227 | Ga0307411_10295844 | |||
| 228 | Ga0307415_101306273 | |||
| 229 | Ga0451791_0466544 | |||
| 230 | Ga0451802_0893744 | |||
| 231 | Ga0451802_0999209 | |||
| 232 | Ga0451853_0607212 | |||
| 233 | Ga0466969_0094126 | |||
| 234 | Ga0466969_0153769 | |||
| 235 | Ga0466966_0004521 | |||
| 236 | Ga0466961_0003777 | |||
| 237 | Ga0466961_0020086 | |||
| 238 | Ga0466963_0054954 | |||
| 239 | Ga0466963_0145941 | |||
| 240 | Ga0466963_1262479 | |||
| 241 | Ga0466964_0014296 | |||
| 242 | Ga0466964_0404453 | |||
| 243 | Ga0466970_0124257 | |||
| 244 | Ga0466957_0205912 | |||
| 245 | Ga0466957_0276567 | |||
| 246 | Ga0466957_0379548 | |||
| 247 | Ga0466960_0019248 | |||
| 248 | Ga0466959_0089737 | |||
| 249 | Ga0466959_0360456 | |||
| 250 | Ga0466959_0508754 | |||
| 251 | Ga0466958_0029887 | |||
| 252 | Ga0466958_0072647 | |||
| 253 | Ga0466958_0109728 | |||
| 254 | Ga0466958_0128772 | |||
| 255 | Ga0466958_0244080 | |||
| 256 | Ga0466967_0106514 | |||
| 257 | Ga0466967_0209936 | |||
| 258 | Ga0466967_0867582 | |||
| 259 | Ga0466967_2450557 | |||
| 260 | Ga0496102_0000233 | |||
| 261 | Ga0496103_0028226 | |||
| 262 | Ga0496105_0339214 | |||
| 263 | Ga0496118_0192096 | |||
| 264 | Ga0496119_0000521 | |||
| 265 | Ga0496120_0010653 | |||
| 266 | Ga0496121_0002251 | |||
| 267 | Ga0496126_0373784 | |||
| 268 | Ga0496126_0638017 | |||
| 269 | Ga0501031_0021313 | |||
| 270 | Ga0501033_0144052 | |||
| 271 | Ga0501034_1059417 | |||
| 272 | Ga0501036_0024374 | |||
| 273 | Ga0501037_0028108 | |||
| 274 | Ga0501037_0155071 | |||
| 275 | Ga0501038_0219028 | |||
| 276 | Ga0501039_0027998 | |||
| 277 | Ga0501039_0327707 | |||
| 278 | Ga0501041_0503652 | |||
| 279 | Ga0501042_0121018 | |||
| 280 | Ga0501043_0033721 | |||
| 281 | Ga0501046_0069559 | |||
| 282 | Ga0501046_0247743 | |||
| 283 | Ga0501047_0105587 | |||
| 284 | Ga0501047_0302367 | |||
| 285 | Ga0501068_0218797 | |||
| 286 | Ga0501069_0078246 | |||
| 287 | Ga0501069_0147909 | |||
| 288 | Ga0501070_0158811 | |||
| 289 | Ga0501070_0422782 | |||
| 290 | Ga0501071_0111922 | |||
| 291 | Ga0501072_0015828 | |||
| 292 | Ga0501074_0028586 | |||
| 293 | Ga0501074_0056741 | |||
| 294 | Ga0501075_0167634 | |||
| 295 | Ga0501075_0236202 | |||
| 296 | Ga0501076_0306349 | |||
| 297 | Ga0501077_0061339 | |||
| 298 | Ga0501079_0403242 | |||
| 299 | Ga0501080_0210868 | |||
| 300 | Ga0501080_0265794 | |||
| 301 | Ga0501081_0068380 | |||
| 302 | Ga0501083_0404142 | |||
| 303 | Ga0501035_0074707 | |||
| 304 | Ga0501035_0185220 | |||
| 305 | Ga0501035_1087437 | |||
| 306 | Ga0501044_0157035 | |||
| 307 | Ga0501045_0106551 | |||
| 308 | nmdc:mga0n895_919654_c1 | |||
| 309 | nmdc:mga0a205_655143_c1 | |||
| 310 | Ga0500644_0009693 | |||
| 311 | Ga0500641_0017560 | |||
| 312 | Ga0500655_050310 | |||
| 313 | Ga0500568_0001945 | |||
| 314 | Ga0500577_0280868 | |||
| 315 | Ga0500589_137895 | |||
| 316 | Ga0501082_0351952 | |||
| 317 | Ga0530510_0086382 | |||
| 318 | 2515494866 | |||
| 319 | 2515718870 | |||
| 320 | 2515755529 | |||
| 321 | 2516083082 | |||
| 322 | 2516090168 | |||
| 323 | 2558908352 | |||
| 324 | 2644443988 | |||
| 325 | 2645722169 | |||
| 326 | 2645725054 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3n8k-assembly2.cif.gz_M | type ii dehydroquinase from mycobacterium tuberculosis complexed with citrazinic acid | 0.9978 | 3 | 142 |
| 2y71-assembly1.cif.gz_A | structure of mycobacterium tuberculosis type ii dehydroquinase complexed with (1r,4s,5r)-1,4,5-trihydroxy-3-((5-methylbenzo(b) thiophen-2-yl)methoxy)cyclohex-2-enecarboxylate | 0.9968 | 3 | 141 |
| 4kiu-assembly2.cif.gz_X | design and structural analysis of aromatic inhibitors of type ii dehydroquinate dehydratase from mycobacterium tuberculosis - compound 49d [5-[(3-nitrobenzyl)oxy]benzene-1,3-dicarboxylic acid] | 0.9924 | 3 | 140 |
| 3n7a-assembly2.cif.gz_X | crystal structure of 3-dehydroquinate dehydratase from mycobacterium tuberculosis in complex with inhibitor 2 | 0.9923 | 3 | 141 |
| 3n59-assembly2.cif.gz_N | type ii dehydroquinase from mycobacterium tuberculosis complexed with 3-dehydroshikimate | 0.9921 | 3 | 141 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 4kiuM00 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Dehydroquinase, class II | 0.9912 | 3 | 141 | 3.40.50.9100 |
| 4kiuM00 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Dehydroquinase, class II | 0.9695 | 3 | 141 | 3.40.50.9100 |
| 1d0iH00 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Dehydroquinase, class II | 0.9661 | 2 | 141 | 3.40.50.9100 |
| 4ckwC00 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Dehydroquinase, class II | 0.9642 | 3 | 141 | 3.40.50.9100 |
| 1gqoA00 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Dehydroquinase, class II | 0.9522 | 3 | 141 | 3.40.50.9100 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-Q741J6-F1-model_v4 | 3-dehydroquinate dehydratase (3-dehydroquinase) (EC 4.2.1.10) (Type II DHQase) | 0.9982 | 2 | 140 |
GO:0003855
GO:0008652 GO:0009073 GO:0009423 GO:0019631 |
| AF-A0A6N7GC94-F1-model_v4 | 3-dehydroquinate dehydratase (3-dehydroquinase) (EC 4.2.1.10) (Type II DHQase) | 0.998 | 2 | 141 |
GO:0003855
GO:0008652 GO:0009073 GO:0009423 GO:0019631 |
| AF-A0A7V8Y4G6-F1-model_v4 | 3-dehydroquinate dehydratase (3-dehydroquinase) (EC 4.2.1.10) (Type II DHQase) | 0.9978 | 3 | 142 |
GO:0003855
GO:0008652 GO:0009073 GO:0009423 GO:0016020 GO:0019631 |
| AF-A0A2W6B7X1-F1-model_v4 | 3-dehydroquinate dehydratase (3-dehydroquinase) (EC 4.2.1.10) (Type II DHQase) | 0.9974 | 3 | 141 |
GO:0003855
GO:0008652 GO:0009073 GO:0009423 GO:0019631 |
| AF-A0A3D0NHK6-F1-model_v4 | 3-dehydroquinate dehydratase (3-dehydroquinase) (EC 4.2.1.10) (Type II DHQase) | 0.9973 | 1 | 141 |
GO:0003855
GO:0008652 GO:0009073 GO:0009423 GO:0016020 GO:0019631 |