F242239

General Info

Members Datasets Scaffolds Average Seq Length
163 80 161 426

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0302851|Ga0453684_0302851_236_1663
Length 475
Sequence MTQVIHIWKMRGRYRRIPLLVLSEEVVFLISSEGRVNIIQEENTQMSTIKDRKLGFATRQLHAGYSPDATTGSRAVPLYQTTSYQFKSTEHAANLFALKELGNIYTRLMNPTTDVLEQRIAALEGGVAALAASSGHAAQAQAIFTLCSAGDHIVSSSRLYGGTYNQFAYTLPKLGINVTFVDPGDPKNFEAAIQPNTKIIYGETLGNPDISVFPFEEVSEIANKHKLILFIDNTFATPYLFRPFEWGAHVITHSTTKFITGNGTSIGGIIVDGGNYDWSNGKFENFNTPDPSYHGLVYSSIAAAGLPPFAIKARVQVLRDIGACQSPFNAWQTLLGLETLNLRIDRHVQNTQAVAEYLESHPKVSWVKYPGLKSHPDYARAKKYLPKGAGAILGFGIKGGAEAGRKFIESLQLFSHLANVGDARSLAIHPATTTHSQLSEEQQVSAGVSPDFIRLSIGLEDFEDIKWDLEQALNS

Samples

Sample ID Description Type Environment
1 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
2 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
3 3300004798 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
10 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
11 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
12 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
13 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
14 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
15 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
16 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
17 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
18 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
19 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
22 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
23 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
24 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
25 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
27 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
28 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
29 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
30 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
31 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
32 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
33 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
34 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
35 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
36 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
37 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
38 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
39 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
40 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
41 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
42 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
43 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
44 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
45 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
46 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
47 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
48 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
49 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
50 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
51 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
52 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
53 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
54 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
55 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
56 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
57 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
58 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
59 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
60 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
61 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
62 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
63 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
64 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
65 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
66 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
67 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
68 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
69 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
70 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
71 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
72 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
73 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
74 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
75 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
76 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
77 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
78 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
79 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
80 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.39
Metatranscriptomes 0.61
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.52
Nodule 0
Rhizoplane 5.52
Rhizosphere 82.82
Stem 0
Stem Tuber 0
Unclassified 6.13

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10104042 3300003322 Bacteria 7018
2 JGI25405J52794_10003145 3300003911 Bacteria 2874
3 Ga0058859_11726080 3300004798 Bacteria 1915
4 Ga0065707_10123889 3300005295 Bacteria 2055
5 Ga0070683_100052546 3300005329 Bacteria 3775
6 Ga0070694_100049185 3300005444 Bacteria 2839
7 Ga0070708_100009031 3300005445 Bacteria 8038
8 Ga0070708_100133613 3300005445 Bacteria 2297
9 Ga0070707_100284111 3300005468 Bacteria 1608
10 Ga0068860_100010859 3300005843 Bacteria 8983
11 Ga0081538_10006133 3300005981 Bacteria 10665
12 Ga0081538_10030945 3300005981 Bacteria 3621
13 Ga0081540_1018008 3300005983 Bacteria 4349
14 Ga0081539_10005929 3300005985 Bacteria 12068
15 Ga0075368_10030104 3300006042 Bacteria 2101
16 Ga0075367_10003352 3300006178 Bacteria 7617
17 Ga0075370_10006459 3300006353 Bacteria 5899
18 Ga0075428_100018364 3300006844 Bacteria 7732
19 Ga0075431_100032567 3300006847 Bacteria 5371
20 Ga0075433_10019979 3300006852 Bacteria 5595
21 Ga0111539_10006331 3300009094 Bacteria 15261
22 Ga0114129_10139401 3300009147 Bacteria 3326
23 Ga0163162_10085337 3300013306 Bacteria 3234
24 Ga0163163_10026994 3300014325 Bacteria 5494
25 Ga0157380_10076190 3300014326 Bacteria 2729
26 Ga0213875_10003941 3300021388 Bacteria 8290
27 Ga0268265_10135189 3300028380 Bacteria 2056
28 Ga0265334_10002094 3300028573 Bacteria 9425
29 Ga0265336_10000426 3300028666 Bacteria 26150
30 Ga0265338_10031803 3300028800 Bacteria 5164
31 Ga0265324_10000002 3300029957 Bacteria 382754
32 Ga0265324_10000569 3300029957 Bacteria 25232
33 Ga0307511_10000108 3300030521 Bacteria 74238
34 Ga0265330_10010864 3300031235 Bacteria 4278
35 Ga0265320_10057370 3300031240 Bacteria 1868
36 Ga0265325_10000476 3300031241 Bacteria 29028
37 Ga0265329_10011073 3300031242 Bacteria 3286
38 Ga0265327_10003636 3300031251 Bacteria 14503
39 Ga0265327_10011852 3300031251 Bacteria 5956
40 Ga0265327_10019640 3300031251 Bacteria 4146
41 Ga0265327_10061699 3300031251 Bacteria 1911
42 Ga0265316_10020020 3300031344 Bacteria 5707
43 Ga0316579_10008086 3300031691 Bacteria 4370
44 Ga0316579_10021281 3300031691 Bacteria 2888
45 Ga0265314_10001743 3300031711 Bacteria 23554
46 Ga0265314_10026655 3300031711 Bacteria 4339
47 Ga0316576_10009963 3300031727 Bacteria 6153
48 Ga0316576_10211328 3300031727 Unclassified 1460
49 Ga0316578_10107704 3300031728 Bacteria 1673
50 Ga0316577_10002987 3300031733 Bacteria 8465
51 Ga0316577_10003760 3300031733 Bacteria 7725
52 Ga0316577_10007933 3300031733 Bacteria 5671
53 Ga0316577_10014635 3300031733 Bacteria 4307
54 Ga0316577_10019664 3300031733 Bacteria 3739
55 Ga0316577_10021966 3300031733 Bacteria 3541
56 Ga0316577_10033415 3300031733 Bacteria 2873
57 Ga0316577_10059208 3300031733 Bacteria 2138
58 Ga0316577_10086015 3300031733 Bacteria 1759
59 Ga0316574_0014386 3300035398 Bacteria 4572
60 Ga0316574_0147931 3300035398 Bacteria 1514
61 Ga0316574_0176721 3300035398 Bacteria 1374
62 Ga0316582_0006687 3300036647 Bacteria 6081
63 Ga0316582_0017837 3300036647 Bacteria 4116
64 Ga0316582_0022283 3300036647 Bacteria 3759
65 Ga0316582_0079210 3300036647 Bacteria 2142
66 Ga0316582_0090026 3300036647 Bacteria 2018
67 Ga0316584_0001093 3300036712 Bacteria 15878
68 Ga0316584_0004643 3300036712 Bacteria 9103
69 Ga0316584_0009552 3300036712 Bacteria 6739
70 Ga0316584_0021211 3300036712 Bacteria 4718
71 Ga0316584_0029762 3300036712 Bacteria 4031
72 Ga0316584_0053262 3300036712 Bacteria 3028
73 Ga0373925_0022933 3300037068 Bacteria 4555
74 Ga0316581_0004344 3300037588 Bacteria 3607
75 Ga0316581_0014020 3300037588 Bacteria 2279
76 Ga0436364_0563933 3300037853 Bacteria 17439
77 Ga0400484_45185 3300038725 Bacteria 2316
78 Ga0400489_16872 3300039093 Bacteria 6081
79 Ga0400487_27081 3300039110 Bacteria 2512
80 Ga0436365_1149468 3300039437 Bacteria 2654
81 Ga0451853_2682404 3300041512 Bacteria 2703
82 Ga0451577_0000070 3300042876 Bacteria 238621
83 Ga0451577_0004686 3300042876 Bacteria 14354
84 Ga0451577_0004873 3300042876 Bacteria 13986
85 Ga0451577_0019730 3300042876 Bacteria 6195
86 Ga0451577_0024043 3300042876 Bacteria 5547
87 Ga0451577_0038455 3300042876 Bacteria 4304
88 Ga0451577_0051300 3300042876 Bacteria 3683
89 Ga0451577_0052983 3300042876 Bacteria 3623
90 Ga0451577_0133088 3300042876 Bacteria 2232
91 Ga0451577_0170516 3300042876 Bacteria 1961
92 Ga0451577_0331999 3300042876 Bacteria 1379
93 Ga0453683_0000448 3300044673 Bacteria 47323
94 Ga0453683_0009560 3300044673 Bacteria 6468
95 Ga0453683_0026581 3300044673 Bacteria 3674
96 Ga0453684_0000263 3300044712 Bacteria 226494
97 Ga0453684_0000402 3300044712 Bacteria 178427
98 Ga0453684_0000822 3300044712 Bacteria 105055
99 Ga0453684_0000938 3300044712 Bacteria 96368
100 Ga0453684_0001310 3300044712 Bacteria 73548
101 Ga0453684_0002894 3300044712 Bacteria 40256
102 Ga0453684_0003008 3300044712 Bacteria 39208
103 Ga0453684_0003802 3300044712 Bacteria 33303
104 Ga0453684_0004178 3300044712 Bacteria 31101
105 Ga0453684_0004663 3300044712 Bacteria 28464
106 Ga0453684_0006346 3300044712 Bacteria 22552
107 Ga0453684_0007792 3300044712 Bacteria 19536
108 Ga0453684_0010411 3300044712 Bacteria 15911
109 Ga0453684_0011675 3300044712 Bacteria 14655
110 Ga0453684_0013684 3300044712 Bacteria 13145
111 Ga0453684_0017813 3300044712 Bacteria 10959
112 Ga0453684_0019434 3300044712 Bacteria 10346
113 Ga0453684_0026061 3300044712 Bacteria 8463
114 Ga0453684_0027033 3300044712 Bacteria 8252
115 Ga0453684_0027531 3300044712 Bacteria 8148
116 Ga0453684_0027657 3300044712 Bacteria 8122
117 Ga0453684_0028307 3300044712 Bacteria 8002
118 Ga0453684_0028871 3300044712 Bacteria 7895
119 Ga0453684_0053204 3300044712 Bacteria 5286
120 Ga0453684_0068996 3300044712 Bacteria 4486
121 Ga0453684_0074179 3300044712 Bacteria 4285
122 Ga0453684_0090501 3300044712 Bacteria 3780
123 Ga0453684_0149443 3300044712 Bacteria 2778
124 Ga0453684_0239510 3300044712 Bacteria 2089
125 Ga0453684_0291742 3300044712 Bacteria 1857
126 Ga0453684_0302851 3300044712 Bacteria 1816
127 Ga0453684_0338714 3300044712 Bacteria 1699
128 Ga0453684_0365880 3300044712 Bacteria 1622
129 Ga0453684_0465854 3300044712 Bacteria 1404
130 Ga0453684_0538012 3300044712 Bacteria 1288
131 Ga0453684_0618195 3300044712 Bacteria 1186
132 Ga0451576_0000676 3300045051 Bacteria 69445
133 Ga0451576_0002237 3300045051 Bacteria 29729
134 Ga0451576_0005261 3300045051 Bacteria 16335
135 Ga0451576_0007817 3300045051 Bacteria 12673
136 Ga0451576_0012475 3300045051 Bacteria 9543
137 Ga0495630_0189685 3300046517 Bacteria 1568
138 Ga0496101_0066699 3300048904 Bacteria 2626
139 Ga0496107_0255238 3300048910 Bacteria 1305
140 Ga0496108_0000379 3300048911 Bacteria 37030
141 Ga0496108_0098288 3300048911 Bacteria 2494
142 Ga0496109_0179015 3300048912 Bacteria 1991
143 Ga0496111_0050681 3300048914 Bacteria 2996
144 Ga0496112_0222753 3300048915 Bacteria 1842
145 Ga0496113_0164007 3300048916 Bacteria 1758
146 Ga0496114_0053706 3300048917 Bacteria 3358
147 Ga0501072_0088952 3300049588 Bacteria 2451
148 nmdc:mga05p37_113289_c1 3300050507 Bacteria 3335
149 nmdc:mga06r32_49429_c1 3300050510 Bacteria 4021
150 nmdc:mga08y16_89405_c1 3300050511 Bacteria 3210
151 nmdc:mga0n895_446439_c1 3300050512 Bacteria 1306
152 nmdc:mga0a205_49611_c1 3300050515 Bacteria 4052
153 nmdc:mga0sz30_2392_c1 3300050516 Bacteria 6694
154 Ga0495612_0000193 3300053078 Bacteria 25943
155 Ga0500646_0000390 3300053090 Bacteria 13179
156 Ga0500594_0016360 3300053118 Bacteria 1801
157 Ga0500652_000175 3300053131 Bacteria 24908
158 Ga0500604_0001980 3300053151 Bacteria 5678
159 Ga0500637_0086306 3300053178 Bacteria 1815
160 Ga0501084_0340624 3300054114 Bacteria 1267
161 Ga0530510_0036303 3300061734 Bacteria 3553

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300035398 Ga0316574_0147931 Ga0316574_0147931_394_1497 339
2 3300005445 Ga0070708_100009031 Ga0070708_1000090314 347
3 3300037588 Ga0316581_0004344 Ga0316581_0004344_2414_3541 363
4 3300035398 Ga0316574_0014386 Ga0316574_0014386_3441_4538 364
5 3300036712 Ga0316584_0053262 Ga0316584_0053262_1550_2758 364
6 3300046517 Ga0495630_0189685 Ga0495630_0189685_12_1160 365
7 3300048910 Ga0496107_0255238 Ga0496107_0255238_14_1162 365
8 3300039093 Ga0400489_16872 Ga0400489_16872_3553_4764 374
9 3300036647 Ga0316582_0079210 Ga0316582_0079210_491_1699 382
10 3300037588 Ga0316581_0014020 Ga0316581_0014020_922_2130 382
11 3300044712 Ga0453684_0618195 Ga0453684_0618195_11_1162 382
12 3300031733 Ga0316577_10021966 Ga0316577_100219661 384
13 3300031691 Ga0316579_10021281 Ga0316579_100212812 390
14 3300031727 Ga0316576_10009963 Ga0316576_100099634 390
15 3300031733 Ga0316577_10003760 Ga0316577_100037602 390
16 3300031733 Ga0316577_10007933 Ga0316577_100079335 390
17 3300031733 Ga0316577_10019664 Ga0316577_100196644 390
18 3300031733 Ga0316577_10033415 Ga0316577_100334152 390
19 3300036647 Ga0316582_0006687 Ga0316582_0006687_3394_4602 390
20 3300036647 Ga0316582_0022283 Ga0316582_0022283_995_2203 390
21 3300036712 Ga0316584_0001093 Ga0316584_0001093_1827_3029 390
22 3300036712 Ga0316584_0004643 Ga0316584_0004643_7806_9014 390
23 3300036712 Ga0316584_0009552 Ga0316584_0009552_4162_5370 390
24 3300036712 Ga0316584_0029762 Ga0316584_0029762_30_1235 390
25 3300031251 Ga0265327_10003636 Ga0265327_100036361 396
26 3300054114 Ga0501084_0340624 Ga0501084_0340624_14_1255 396
27 3300044712 Ga0453684_0538012 Ga0453684_0538012_21_1217 398
28 3300050512 nmdc:mga0n895_446439_c1 nmdc:mga0n895_446439_c1_41_1252 399
29 3300044712 Ga0453684_0465854 Ga0453684_0465854_146_1348 400
30 3300031251 Ga0265327_10019640 Ga0265327_100196404 406
31 3300006852 Ga0075433_10019979 Ga0075433_100199793 414
32 3300048911 Ga0496108_0000379 Ga0496108_0000379_12344_13711 414
33 3300049588 Ga0501072_0088952 Ga0501072_0088952_1020_2312 415
34 3300061734 Ga0530510_0036303 Ga0530510_0036303_1471_2763 415
35 3300005445 Ga0070708_100133613 Ga0070708_1001336132 416
36 3300005468 Ga0070707_100284111 Ga0070707_1002841111 416
37 3300005981 Ga0081538_10006133 Ga0081538_100061333 416
38 3300005983 Ga0081540_1018008 Ga0081540_10180084 416
39 3300005985 Ga0081539_10005929 Ga0081539_100059292 416
40 3300006847 Ga0075431_100032567 Ga0075431_1000325674 416
41 3300009147 Ga0114129_10139401 Ga0114129_101394014 416
42 3300050507 nmdc:mga05p37_113289_c1 nmdc:mga05p37_113289_c1_361_1653 416
43 3300050510 nmdc:mga06r32_49429_c1 nmdc:mga06r32_49429_c1_2555_3847 416
44 3300050515 nmdc:mga0a205_49611_c1 nmdc:mga0a205_49611_c1_2293_3585 416
45 3300005295 Ga0065707_10123889 Ga0065707_101238892 421
46 3300031691 Ga0316579_10008086 Ga0316579_100080862 421
47 3300031728 Ga0316578_10107704 Ga0316578_101077041 421
48 3300031733 Ga0316577_10014635 Ga0316577_100146352 421
49 3300031733 Ga0316577_10059208 Ga0316577_100592081 421
50 3300031733 Ga0316577_10086015 Ga0316577_100860152 421
51 3300036647 Ga0316582_0090026 Ga0316582_0090026_638_1921 421
52 3300036712 Ga0316584_0021211 Ga0316584_0021211_2838_4121 421
53 3300042876 Ga0451577_0019730 Ga0451577_0019730_2311_3594 421
54 3300042876 Ga0451577_0051300 Ga0451577_0051300_470_1762 421
55 3300042876 Ga0451577_0052983 Ga0451577_0052983_764_2047 421
56 3300044712 Ga0453684_0002894 Ga0453684_0002894_20279_21571 421
57 3300044712 Ga0453684_0004663 Ga0453684_0004663_10835_12112 421
58 3300044712 Ga0453684_0007792 Ga0453684_0007792_18206_19483 421
59 3300044712 Ga0453684_0027657 Ga0453684_0027657_1724_3007 421
60 3300003911 JGI25405J52794_10003145 JGI25405J52794_100031452 422
61 3300004798 Ga0058859_11726080 Ga0058859_117260801 422
62 3300005981 Ga0081538_10030945 Ga0081538_100309453 422
63 3300006042 Ga0075368_10030104 Ga0075368_100301042 422
64 3300006178 Ga0075367_10003352 Ga0075367_100033523 422
65 3300006353 Ga0075370_10006459 Ga0075370_100064595 422
66 3300006844 Ga0075428_100018364 Ga0075428_1000183645 422
67 3300009094 Ga0111539_10006331 Ga0111539_100063313 422
68 3300013306 Ga0163162_10085337 Ga0163162_100853372 422
69 3300030521 Ga0307511_10000108 Ga0307511_1000010850 422
70 3300042876 Ga0451577_0000070 Ga0451577_0000070_115353_116648 422
71 3300044712 Ga0453684_0003802 Ga0453684_0003802_3963_5243 422
72 3300044712 Ga0453684_0011675 Ga0453684_0011675_3495_4790 422
73 3300044712 Ga0453684_0028871 Ga0453684_0028871_1112_2392 422
74 3300045051 Ga0451576_0012475 Ga0451576_0012475_471_1757 422
75 3300050511 nmdc:mga08y16_89405_c1 nmdc:mga08y16_89405_c1_1621_2913 422
76 3300050516 nmdc:mga0sz30_2392_c1 nmdc:mga0sz30_2392_c1_5314_6603 422
77 3300053090 Ga0500646_0000390 Ga0500646_0000390_9094_10383 422
78 3300053118 Ga0500594_0016360 Ga0500594_0016360_28_1317 422
79 3300053151 Ga0500604_0001980 Ga0500604_0001980_4153_5442 422
80 3300053178 Ga0500637_0086306 Ga0500637_0086306_220_1509 422
81 3300005444 Ga0070694_100049185 Ga0070694_1000491852 423
82 3300005843 Ga0068860_100010859 Ga0068860_1000108594 423
83 3300014325 Ga0163163_10026994 Ga0163163_100269942 423
84 3300014326 Ga0157380_10076190 Ga0157380_100761902 423
85 3300028380 Ga0268265_10135189 Ga0268265_101351891 423
86 3300029957 Ga0265324_10000569 Ga0265324_1000056913 423
87 3300031711 Ga0265314_10001743 Ga0265314_1000174310 423
88 3300031727 Ga0316576_10211328 Ga0316576_102113281 423
89 3300031733 Ga0316577_10002987 Ga0316577_100029878 423
90 3300035398 Ga0316574_0176721 Ga0316574_0176721_32_1363 423
91 3300036647 Ga0316582_0017837 Ga0316582_0017837_2534_3823 423
92 3300037068 Ga0373925_0022933 Ga0373925_0022933_2163_3500 423
93 3300038725 Ga0400484_45185 Ga0400484_45185_145_1440 423
94 3300039110 Ga0400487_27081 Ga0400487_27081_894_2189 423
95 3300039437 Ga0436365_1149468 Ga0436365_1149468_676_2067 423
96 3300041512 Ga0451853_2682404 Ga0451853_2682404_430_1767 423
97 3300044673 Ga0453683_0026581 Ga0453683_0026581_2374_3660 423
98 3300044712 Ga0453684_0000263 Ga0453684_0000263_222102_223385 423
99 3300044712 Ga0453684_0019434 Ga0453684_0019434_2223_3509 423
100 3300044712 Ga0453684_0074179 Ga0453684_0074179_2303_3589 423
101 3300044712 Ga0453684_0149443 Ga0453684_0149443_877_2169 423
102 3300045051 Ga0451576_0000676 Ga0451576_0000676_66984_68270 423
103 3300048904 Ga0496101_0066699 Ga0496101_0066699_602_1963 423
104 3300048911 Ga0496108_0098288 Ga0496108_0098288_20_1357 423
105 3300048912 Ga0496109_0179015 Ga0496109_0179015_333_1670 423
106 3300048914 Ga0496111_0050681 Ga0496111_0050681_1096_2433 423
107 3300048915 Ga0496112_0222753 Ga0496112_0222753_219_1571 423
108 3300048916 Ga0496113_0164007 Ga0496113_0164007_160_1497 423
109 3300048917 Ga0496114_0053706 Ga0496114_0053706_1909_3270 423
110 3300053078 Ga0495612_0000193 Ga0495612_0000193_1732_3069 423
111 3300021388 Ga0213875_10003941 Ga0213875_100039416 424
112 3300028573 Ga0265334_10002094 Ga0265334_100020943 424
113 3300028666 Ga0265336_10000426 Ga0265336_1000042612 424
114 3300028800 Ga0265338_10031803 Ga0265338_100318033 424
115 3300029957 Ga0265324_10000002 Ga0265324_10000002259 424
116 3300031235 Ga0265330_10010864 Ga0265330_100108642 424
117 3300031241 Ga0265325_10000476 Ga0265325_100004762 424
118 3300031242 Ga0265329_10011073 Ga0265329_100110733 424
119 3300031344 Ga0265316_10020020 Ga0265316_100200202 424
120 3300031711 Ga0265314_10026655 Ga0265314_100266553 424
121 3300037853 Ga0436364_0563933 Ga0436364_0563933_6500_7786 424
122 3300042876 Ga0451577_0004873 Ga0451577_0004873_149_1441 424
123 3300042876 Ga0451577_0331999 Ga0451577_0331999_18_1307 424
124 3300044712 Ga0453684_0004178 Ga0453684_0004178_19803_21095 424
125 3300044712 Ga0453684_0006346 Ga0453684_0006346_5601_6890 424
126 3300044712 Ga0453684_0027033 Ga0453684_0027033_3313_4602 424
127 3300044712 Ga0453684_0068996 Ga0453684_0068996_3055_4344 424
128 3300044712 Ga0453684_0239510 Ga0453684_0239510_597_1886 424
129 3300044712 Ga0453684_0365880 Ga0453684_0365880_200_1489 424
130 3300045051 Ga0451576_0002237 Ga0451576_0002237_24658_25947 424
131 3300031240 Ga0265320_10057370 Ga0265320_100573702 425
132 3300042876 Ga0451577_0004686 Ga0451577_0004686_12879_14171 425
133 3300042876 Ga0451577_0019730 Ga0451577_0019730_4724_6016 425
134 3300042876 Ga0451577_0024043 Ga0451577_0024043_3836_5128 425
135 3300042876 Ga0451577_0133088 Ga0451577_0133088_452_1747 425
136 3300044673 Ga0453683_0000448 Ga0453683_0000448_18489_19781 425
137 3300044673 Ga0453683_0009560 Ga0453683_0009560_3149_4441 425
138 3300044712 Ga0453684_0000402 Ga0453684_0000402_149398_150690 425
139 3300044712 Ga0453684_0013684 Ga0453684_0013684_8347_9642 425
140 3300044712 Ga0453684_0026061 Ga0453684_0026061_6972_8264 425
141 3300044712 Ga0453684_0027657 Ga0453684_0027657_4468_5760 425
142 3300044712 Ga0453684_0053204 Ga0453684_0053204_3824_5116 425
143 3300044712 Ga0453684_0090501 Ga0453684_0090501_1256_2548 425
144 3300044712 Ga0453684_0291742 Ga0453684_0291742_273_1565 425
145 3300044712 Ga0453684_0302851 Ga0453684_0302851_236_1663 425
146 3300044712 Ga0453684_0338714 Ga0453684_0338714_124_1416 425
147 3300045051 Ga0451576_0005261 Ga0451576_0005261_14728_16020 425
148 3300031251 Ga0265327_10011852 Ga0265327_100118526 426
149 3300031251 Ga0265327_10061699 Ga0265327_100616992 426
150 3300042876 Ga0451577_0038455 Ga0451577_0038455_2410_3720 426
151 3300044712 Ga0453684_0000822 Ga0453684_0000822_33435_34751 426
152 3300044712 Ga0453684_0000938 Ga0453684_0000938_5945_7240 426
153 3300044712 Ga0453684_0001310 Ga0453684_0001310_10005_11315 426
154 3300044712 Ga0453684_0003008 Ga0453684_0003008_24513_25808 426
155 3300044712 Ga0453684_0010411 Ga0453684_0010411_9055_10356 426
156 3300044712 Ga0453684_0017813 Ga0453684_0017813_52_1353 426
157 3300044712 Ga0453684_0027531 Ga0453684_0027531_602_1903 426
158 3300044712 Ga0453684_0028307 Ga0453684_0028307_478_1779 426
159 3300053131 Ga0500652_000175 Ga0500652_000175_16793_18124 426
160 3300042876 Ga0451577_0170516 Ga0451577_0170516_134_1435 430
161 3300003322 rootL2_10104042 rootL2_101040423 432
162 3300005329 Ga0070683_100052546 Ga0070683_1000525461 432
163 3300045051 Ga0451576_0007817 Ga0451576_0007817_6730_8028 432

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01053

Cys_Met_Meta_PP

Cys/Met metabolism PLP-dependent enzyme

57

474

0.97

PF01041

DegT_DnrJ_EryC1

DegT/DnrJ/EryC1/StrS aminotransferase family

90

241

0.84

PF00155

Aminotran_1_2

Aminotransferase class I and II

77

244

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
8sf6-assembly3.cif.gz_E promiscuous amino acid gamma synthase from caldicellulosiruptor hydrothermalis in closed conformation 0.9804 1 432
7kb0-assembly1.cif.gz_A o-acety-l-homoserine aminocarboxypropyltransferase (mety) from thermotoga maritima with pyridoxal-5-phosphate (plp) bound in the internal aldimine state 0.9795 2 431
8erb-assembly8.cif.gz_N crystal structure of fub7 in complex with vinylglycine ketimine 0.9756 4 431
4l0o-assembly3.cif.gz_C structure determination of cystathionine gamma-synthase from helicobacter pylori 0.9747 4 432
7f1u-assembly1.cif.gz_D crystal structure of pseudomonas putida methionine gamma-lyase q349s mutant with l-methionine intermediates 0.9744 4 430
ID Description Score Start End Superfamily
af_O13326_295_429_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9866 299 432 3.90.1150.10
5e4zA01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9783 4 295 3.40.640.10
af_O53390_302_449_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9743 299 430 3.90.1150.10
4kamA01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9729 65 296 3.40.640.10
af_P32929_263_402_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9727 297 429 3.90.1150.10
ID Description Score Start End GO Terms
AF-A0A382DB25-F1-model_v4 Aminotransferase class V domain-containing protein 0.995 4 226 GO:0003961
GO:0004124
GO:0005737
GO:0006535
GO:0019346
GO:0030170
GO:0071269
AF-X8DDX7-F1-model_v4 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.9917 14 197 GO:0003961
GO:0004124
GO:0005737
GO:0006535
GO:0008483
GO:0019346
GO:0030170
GO:0071269
AF-A0A356U447-F1-model_v4 Bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase (EC 2.5.1.49) 0.9915 71 201 GO:0003961
GO:0004124
GO:0005737
GO:0006535
GO:0019346
GO:0030170
GO:0071269
AF-A3U7R8-F1-model_v4 O-acetylhomoserine sulfhydrylase 0.9909 1 431 GO:0003961
GO:0004124
GO:0005737
GO:0006535
GO:0019346
GO:0030170
GO:0071269
AF-X8BAY1-F1-model_v4 deleted 0.9907 3 243

Feature Viewer

pLDDT pTM Quality
93.54 0.93 High
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Predicted Structure (AlphaFold2)

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