F241284

General Info

Members Datasets Scaffolds Average Seq Length
163 118 160 308

Family's Representative Sequence

Representative Sequence 3300005983|Ga0081540_1003193|Ga0081540_100319311
Length 339
Sequence LAEGLNILLALRYVRPFAVKQTERAGERMAGLRVIFMGTPDFAVAALSEIVAAGHDVLAVYTQPPRPAGRGMVARKSPVHHFAEEAGIPVVTPRSLKSAAVQNQFFTYDAEVAVVAAYGLILPKPILDAPSFGCLNIHASLLPRWRGAAPVQRALMAGDEETGVCIMQMDEGLDTGPVCLGERIAIGQDMTAGELHDELALIGARLIAKALQRLSEGKLKCRPQPERGVTYAAKISKGEERIDWKLPANEVHNRIRAMSPSPGAWFEALLSGRTERIKALRSVVVPGRGEPGQLIDGQLTVACGSQAIRLTRVQRAGKKPMLGAEFLRGFPLGKGTHFS

Samples

Sample ID Description Type Environment
1 2671180139 Chelativorans sp. A52C2 Isolate Unclassified
2 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
10 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
11 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
16 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
17 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
18 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
19 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
20 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
21 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
24 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
25 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
26 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
34 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
46 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
48 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
49 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
50 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
51 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
52 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
53 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
54 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
55 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
56 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
57 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
58 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
59 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
60 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
61 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
62 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
63 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
64 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
65 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
66 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
67 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
68 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
69 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
70 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
71 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
72 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
73 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
74 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
75 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
76 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
77 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
78 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
79 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
80 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
81 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
82 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
83 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
84 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
85 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
86 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
94 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
95 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
96 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
97 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
100 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
101 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
102 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
103 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
104 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
105 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
106 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
107 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
108 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
109 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
110 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
111 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
112 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
113 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
114 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
115 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
116 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
117 8002060224 Methylocystis sp. Sn-Cys Isolate Unclassified
118 8054563764 Acuticoccus kalidii M5D2P5 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.16
Metatranscriptomes 0
Isolates 1.84

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.88
Nodule 0
Rhizoplane 10.43
Rhizosphere 71.17
Stem 0
Stem Tuber 0
Unclassified 5.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065715_10100143 3300005293 Bacteria 3332
2 Ga0068869_100175875 3300005334 Bacteria 1675
3 Ga0070682_100039894 3300005337 Bacteria 2887
4 Ga0070669_100182448 3300005353 Bacteria 1642
5 Ga0070688_100193361 3300005365 Bacteria 1419
6 Ga0070659_100004441 3300005366 Bacteria 10020
7 Ga0070667_100420054 3300005367 Bacteria 1219
8 Ga0068853_100001842 3300005539 Bacteria 15593
9 Ga0070695_100362962 3300005545 Bacteria 1088
10 Ga0070693_100001561 3300005547 Bacteria 10348
11 Ga0070665_100143424 3300005548 Bacteria 2391
12 Ga0070704_100126199 3300005549 Bacteria 1975
13 Ga0068855_100051274 3300005563 Bacteria 4861
14 Ga0081455_10000068 3300005937 Bacteria 112215
15 Ga0081540_1003193 3300005983 Bacteria 13055
16 Ga0075365_10063664 3300006038 Bacteria 2470
17 Ga0075368_10032004 3300006042 Bacteria 2041
18 Ga0075363_100089975 3300006048 Bacteria 1688
19 Ga0075364_10015410 3300006051 Bacteria 4741
20 Ga0075364_10055483 3300006051 Bacteria 2592
21 Ga0075362_10019336 3300006177 Bacteria 2830
22 Ga0075367_10005772 3300006178 Bacteria 6191
23 Ga0075367_10037204 3300006178 Bacteria 2827
24 Ga0075367_10149665 3300006178 Bacteria 1448
25 Ga0075367_10247813 3300006178 Bacteria 1117
26 Ga0075428_100477381 3300006844 Bacteria 1334
27 Ga0075433_10208117 3300006852 Bacteria 1739
28 Ga0075434_100006930 3300006871 Bacteria 10446
29 Ga0075434_100155228 3300006871 Bacteria 2308
30 Ga0075434_100466505 3300006871 Bacteria 1284
31 Ga0075435_100134423 3300007076 Bacteria 2071
32 Ga0075435_100137410 3300007076 Bacteria 2048
33 Ga0075435_100466070 3300007076 Bacteria 1090
34 Ga0105240_10117356 3300009093 Bacteria 3209
35 Ga0111539_10021859 3300009094 Bacteria 7865
36 Ga0111539_10398469 3300009094 Bacteria 1603
37 Ga0114129_10009192 3300009147 Bacteria 14089
38 Ga0157370_10031064 3300013104 Bacteria 5228
39 Ga0157375_10332848 3300013308 Bacteria 1683
40 Ga0163163_10183720 3300014325 Bacteria 2138
41 Ga0157380_10371054 3300014326 Bacteria 1347
42 Ga0207645_10191115 3300025907 Bacteria 1345
43 Ga0207707_10055298 3300025912 Bacteria 3452
44 Ga0207695_10026179 3300025913 Bacteria 6512
45 Ga0207681_10096284 3300025923 Bacteria 2125
46 Ga0207690_10231170 3300025932 Bacteria 1420
47 Ga0207670_10062880 3300025936 Bacteria 2538
48 Ga0207669_10133944 3300025937 Bacteria 1708
49 Ga0207689_10064940 3300025942 Bacteria 3002
50 Ga0207667_10072563 3300025949 Bacteria 3578
51 Ga0207639_10061974 3300026041 Bacteria 2890
52 Ga0207675_100042575 3300026118 Bacteria 4240
53 Ga0207675_100134016 3300026118 Bacteria 2349
54 Ga0207428_10113901 3300027907 Bacteria 2079
55 Ga0268265_10131676 3300028380 Bacteria 2079
56 Ga0265330_10016516 3300031235 Bacteria 3405
57 Ga0265328_10000011 3300031239 Bacteria 161717
58 Ga0265328_10000708 3300031239 Bacteria 15423
59 Ga0265328_10002576 3300031239 Bacteria 8121
60 Ga0265329_10008781 3300031242 Bacteria 3812
61 Ga0265331_10000017 3300031250 Bacteria 269978
62 Ga0265331_10002771 3300031250 Bacteria 11639
63 Ga0265331_10007582 3300031250 Bacteria 6262
64 Ga0265327_10007722 3300031251 Bacteria 8227
65 Ga0265327_10029151 3300031251 Bacteria 3143
66 Ga0265316_10002472 3300031344 Bacteria 19163
67 Ga0265316_10074054 3300031344 Bacteria 2621
68 Ga0307513_10021442 3300031456 Bacteria 7626
69 Ga0307409_100186718 3300031995 Bacteria 1841
70 Ga0307411_10532447 3300032005 Bacteria 999
71 Ga0373959_0004239 3300034820 Bacteria 2305
72 Ga0373940_0001966 3300035088 Bacteria 3880
73 Ga0373939_0030335 3300035114 Bacteria 1554
74 Ga0316574_0010257 3300035398 Bacteria 5284
75 Ga0373931_0002357 3300035691 Bacteria 8348
76 Ga0316584_0011779 3300036712 Bacteria 6155
77 Ga0316584_0195516 3300036712 Bacteria 1494
78 Ga0373925_0552417 3300037068 Bacteria 947
79 Ga0316581_0002145 3300037588 Bacteria 4644
80 Ga0400490_01503 3300038726 Bacteria 1598
81 Ga0400485_03949 3300038735 Bacteria 2084
82 Ga0400485_05802 3300038735 Bacteria 1381
83 Ga0400488_33773 3300038741 Bacteria 1548
84 Ga0400486_12015 3300038742 Bacteria 1410
85 Ga0436360_0475873 3300039438 Bacteria 4099
86 Ga0436361_0105743 3300039447 Bacteria 5922
87 Ga0436362_0490130 3300039453 Bacteria 3827
88 Ga0439455_0016210 3300042012 Bacteria 1721
89 Ga0451576_0047068 3300045051 Bacteria 4537
90 Ga0451576_0704574 3300045051 Bacteria 1061
91 Ga0495638_0211611 3300046460 Bacteria 1089
92 Ga0495625_0130322 3300046660 Bacteria 1704
93 Ga0496101_0115456 3300048904 Bacteria 2025
94 Ga0496104_0000990 3300048907 Bacteria 24283
95 Ga0496104_0002638 3300048907 Bacteria 15427
96 Ga0496105_0098174 3300048908 Bacteria 2419
97 Ga0496106_0059196 3300048909 Bacteria 2901
98 Ga0496108_0026792 3300048911 Bacteria 4757
99 Ga0496109_0001562 3300048912 Bacteria 19079
100 Ga0496110_0027794 3300048913 Bacteria 4852
101 Ga0496111_0002538 3300048914 Bacteria 11024
102 Ga0496111_0131645 3300048914 Bacteria 1851
103 Ga0496112_0045221 3300048915 Bacteria 4316
104 Ga0496112_0075717 3300048915 Bacteria 3328
105 Ga0496112_0790294 3300048915 Bacteria 874
106 Ga0496113_0000917 3300048916 Bacteria 15578
107 Ga0496113_0229073 3300048916 Bacteria 1481
108 Ga0496113_0400703 3300048916 Bacteria 1102
109 Ga0496115_0177874 3300048918 Bacteria 1759
110 Ga0501034_0000014 3300049571 Bacteria 297798
111 Ga0501034_0123191 3300049571 Bacteria 2578
112 Ga0501036_0001249 3300049572 Bacteria 19469
113 Ga0501039_0000087 3300049575 Bacteria 69688
114 Ga0501043_0043098 3300049579 Bacteria 3547
115 Ga0501046_0000119 3300049580 Bacteria 83589
116 Ga0501046_0004992 3300049580 Bacteria 11916
117 Ga0501046_0036259 3300049580 Bacteria 3970
118 Ga0501047_0000201 3300049581 Bacteria 72425
119 Ga0501047_0016274 3300049581 Bacteria 7093
120 Ga0501047_0109872 3300049581 Bacteria 2640
121 Ga0501048_0246136 3300049582 Bacteria 1269
122 Ga0501067_0003486 3300049583 Bacteria 8644
123 Ga0501067_0003728 3300049583 Bacteria 8393
124 Ga0501073_0007946 3300049589 Bacteria 7872
125 Ga0501073_0054988 3300049589 Bacteria 2786
126 Ga0501080_0000010 3300049742 Bacteria 115062
127 Ga0501081_0121916 3300049743 Bacteria 1858
128 Ga0501035_0000077 3300049822 Bacteria 121242
129 Ga0501044_0000473 3300049823 Bacteria 49016
130 Ga0501044_0193993 3300049823 Bacteria 1992
131 Ga0501045_0184916 3300049824 Bacteria 1552
132 nmdc:mga03683_1012_c1 3300050489 Bacteria 8217
133 nmdc:mga03683_52608_c1 3300050489 Bacteria 1702
134 nmdc:mga03n38_158453_c1 3300050490 Bacteria 1144
135 nmdc:mga00v17_53216_c1 3300050491 Bacteria 2467
136 nmdc:mga00v17_6713_c1 3300050491 Bacteria 6115
137 nmdc:mga0yw44_136858_c1 3300050492 Bacteria 1590
138 nmdc:mga06z11_11213_c1 3300050494 Bacteria 3855
139 nmdc:mga06z11_15440_c1 3300050494 Bacteria 3409
140 nmdc:mga06z11_1579_c1 3300050494 Bacteria 8487
141 nmdc:mga04h51_303_c1 3300050495 Bacteria 12515
142 nmdc:mga05p37_236672_c1 3300050507 Bacteria 2197
143 nmdc:mga09592_134647_c1 3300050508 Bacteria 2128
144 nmdc:mga09592_74694_c1 3300050508 Bacteria 2881
145 nmdc:mga0qj67_31319_c1 3300050509 Bacteria 4143
146 nmdc:mga06r32_125960_c1 3300050510 Bacteria 2530
147 nmdc:mga06r32_138963_c1 3300050510 Bacteria 2405
148 nmdc:mga06r32_41992_c1 3300050510 Bacteria 4347
149 nmdc:mga08y16_25286_c1 3300050511 Bacteria 6260
150 nmdc:mga0n895_143637_c1 3300050512 Bacteria 2416
151 nmdc:mga0n895_264934_c1 3300050512 Bacteria 1743
152 nmdc:mga0n895_8291_c1 3300050512 Bacteria 8988
153 nmdc:mga0rr50_51477_c1 3300050513 Bacteria 3055
154 nmdc:mga0rr50_55860_c1 3300050513 Bacteria 2947
155 nmdc:mga0a205_42140_c1 3300050515 Bacteria 2741
156 nmdc:mga0a205_479553_c1 3300050515 Bacteria 1102
157 Ga0495619_0072873 3300053085 Bacteria 2301
158 Ga0500616_0008644 3300053153 Bacteria 6300
159 Ga0501082_0002709 3300060353 Bacteria 15464
160 Ga0501082_0550014 3300060353 Bacteria 1010

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300028380 Ga0268265_10131676 Ga0268265_101316761 263
2 3300037068 Ga0373925_0552417 Ga0373925_0552417_119_928 267
3 3300048915 Ga0496112_0790294 Ga0496112_0790294_21_830 267
4 3300053085 Ga0495619_0072873 Ga0495619_0072873_405_1376 281
5 3300007076 Ga0075435_100466070 Ga0075435_1004660701 289
6 3300025936 Ga0207670_10062880 Ga0207670_100628804 289
7 3300048904 Ga0496101_0115456 Ga0496101_0115456_841_1773 289
8 3300048907 Ga0496104_0002638 Ga0496104_0002638_11001_11933 289
9 3300048908 Ga0496105_0098174 Ga0496105_0098174_1268_2200 289
10 3300048909 Ga0496106_0059196 Ga0496106_0059196_1340_2272 289
11 3300048915 Ga0496112_0045221 Ga0496112_0045221_631_1563 289
12 3300048916 Ga0496113_0229073 Ga0496113_0229073_178_1110 289
13 3300048918 Ga0496115_0177874 Ga0496115_0177874_691_1623 289
14 3300039447 Ga0436361_0105743 Ga0436361_0105743_4127_5065 293
15 3300039453 Ga0436362_0490130 Ga0436362_0490130_2846_3784 293
16 3300006177 Ga0075362_10019336 Ga0075362_100193362 300
17 3300039438 Ga0436360_0475873 Ga0436360_0475873_978_1886 300
18 3300050489 nmdc:mga03683_1012_c1 nmdc:mga03683_1012_c1_1312_2217 300
19 3300050489 nmdc:mga03683_52608_c1 nmdc:mga03683_52608_c1_406_1311 300
20 3300009093 Ga0105240_10117356 Ga0105240_101173562 301
21 3300025913 Ga0207695_10026179 Ga0207695_100261793 301
22 3300005353 Ga0070669_100182448 Ga0070669_1001824482 303
23 3300005367 Ga0070667_100420054 Ga0070667_1004200541 303
24 3300005548 Ga0070665_100143424 Ga0070665_1001434242 303
25 3300025907 Ga0207645_10191115 Ga0207645_101911151 303
26 3300025923 Ga0207681_10096284 Ga0207681_100962842 303
27 3300038735 Ga0400485_05802 Ga0400485_05802_37_948 303
28 3300038741 Ga0400488_33773 Ga0400488_33773_590_1501 303
29 3300042012 Ga0439455_0016210 Ga0439455_0016210_121_1032 303
30 3300060353 Ga0501082_0550014 Ga0501082_0550014_87_998 303
31 3300005549 Ga0070704_100126199 Ga0070704_1001261991 304
32 3300049743 Ga0501081_0121916 Ga0501081_0121916_917_1831 304
33 3300050512 nmdc:mga0n895_264934_c1 nmdc:mga0n895_264934_c1_602_1516 304
34 iso_pu_bacteria 8002060224 8002060804 304
35 iso_pu_bacteria 8054563764 8054568678 304
36 3300005547 Ga0070693_100001561 Ga0070693_1000015612 305
37 iso_pu_bacteria 2671180139 2671693699 305
38 3300005337 Ga0070682_100039894 Ga0070682_1000398942 306
39 3300005366 Ga0070659_100004441 Ga0070659_1000044417 306
40 3300005539 Ga0068853_100001842 Ga0068853_1000018428 306
41 3300005563 Ga0068855_100051274 Ga0068855_1000512745 306
42 3300006051 Ga0075364_10015410 Ga0075364_100154104 306
43 3300013104 Ga0157370_10031064 Ga0157370_100310645 306
44 3300025912 Ga0207707_10055298 Ga0207707_100552984 306
45 3300025949 Ga0207667_10072563 Ga0207667_100725634 306
46 3300026041 Ga0207639_10061974 Ga0207639_100619744 306
47 3300049580 Ga0501046_0000119 Ga0501046_0000119_2366_3292 306
48 3300050491 nmdc:mga00v17_6713_c1 nmdc:mga00v17_6713_c1_1464_2408 306
49 3300005365 Ga0070688_100193361 Ga0070688_1001933611 307
50 3300006038 Ga0075365_10063664 Ga0075365_100636642 307
51 3300006042 Ga0075368_10032004 Ga0075368_100320042 307
52 3300006051 Ga0075364_10055483 Ga0075364_100554832 307
53 3300006178 Ga0075367_10005772 Ga0075367_100057723 307
54 3300006178 Ga0075367_10037204 Ga0075367_100372042 307
55 3300006178 Ga0075367_10247813 Ga0075367_102478132 307
56 3300006844 Ga0075428_100477381 Ga0075428_1004773811 307
57 3300009147 Ga0114129_10009192 Ga0114129_1000919211 307
58 3300013308 Ga0157375_10332848 Ga0157375_103328482 307
59 3300014325 Ga0163163_10183720 Ga0163163_101837202 307
60 3300026118 Ga0207675_100042575 Ga0207675_1000425755 307
61 3300026118 Ga0207675_100134016 Ga0207675_1001340162 307
62 3300048907 Ga0496104_0000990 Ga0496104_0000990_21014_21937 307
63 3300048911 Ga0496108_0026792 Ga0496108_0026792_37_960 307
64 3300048912 Ga0496109_0001562 Ga0496109_0001562_5852_6775 307
65 3300048913 Ga0496110_0027794 Ga0496110_0027794_55_978 307
66 3300048914 Ga0496111_0002538 Ga0496111_0002538_8734_9657 307
67 3300048914 Ga0496111_0131645 Ga0496111_0131645_426_1385 307
68 3300048915 Ga0496112_0075717 Ga0496112_0075717_1241_2164 307
69 3300048916 Ga0496113_0000917 Ga0496113_0000917_2901_3824 307
70 3300048916 Ga0496113_0400703 Ga0496113_0400703_20_952 307
71 3300049571 Ga0501034_0123191 Ga0501034_0123191_680_1612 307
72 3300050490 nmdc:mga03n38_158453_c1 nmdc:mga03n38_158453_c1_112_1038 307
73 3300050491 nmdc:mga00v17_53216_c1 nmdc:mga00v17_53216_c1_866_1801 307
74 3300050492 nmdc:mga0yw44_136858_c1 nmdc:mga0yw44_136858_c1_337_1272 307
75 3300050494 nmdc:mga06z11_11213_c1 nmdc:mga06z11_11213_c1_793_1728 307
76 3300050494 nmdc:mga06z11_15440_c1 nmdc:mga06z11_15440_c1_2385_3311 307
77 3300050494 nmdc:mga06z11_1579_c1 nmdc:mga06z11_1579_c1_1293_2228 307
78 3300050495 nmdc:mga04h51_303_c1 nmdc:mga04h51_303_c1_6610_7545 307
79 3300050507 nmdc:mga05p37_236672_c1 nmdc:mga05p37_236672_c1_635_1558 307
80 3300050508 nmdc:mga09592_134647_c1 nmdc:mga09592_134647_c1_491_1414 307
81 3300050508 nmdc:mga09592_74694_c1 nmdc:mga09592_74694_c1_837_1760 307
82 3300050509 nmdc:mga0qj67_31319_c1 nmdc:mga0qj67_31319_c1_2673_3596 307
83 3300050510 nmdc:mga06r32_125960_c1 nmdc:mga06r32_125960_c1_1462_2385 307
84 3300050510 nmdc:mga06r32_138963_c1 nmdc:mga06r32_138963_c1_955_1878 307
85 3300050510 nmdc:mga06r32_41992_c1 nmdc:mga06r32_41992_c1_1028_1951 307
86 3300005334 Ga0068869_100175875 Ga0068869_1001758752 308
87 3300005983 Ga0081540_1003193 Ga0081540_100319311 308
88 3300006048 Ga0075363_100089975 Ga0075363_1000899752 308
89 3300006178 Ga0075367_10149665 Ga0075367_101496652 308
90 3300006871 Ga0075434_100155228 Ga0075434_1001552283 308
91 3300007076 Ga0075435_100137410 Ga0075435_1001374102 308
92 3300009094 Ga0111539_10021859 Ga0111539_100218594 308
93 3300025942 Ga0207689_10064940 Ga0207689_100649402 308
94 3300027907 Ga0207428_10113901 Ga0207428_101139012 308
95 3300031239 Ga0265328_10002576 Ga0265328_100025766 308
96 3300031250 Ga0265331_10000017 Ga0265331_1000001775 308
97 3300031456 Ga0307513_10021442 Ga0307513_100214424 308
98 3300031995 Ga0307409_100186718 Ga0307409_1001867182 308
99 3300032005 Ga0307411_10532447 Ga0307411_105324471 308
100 3300034820 Ga0373959_0004239 Ga0373959_0004239_1135_2073 308
101 3300035088 Ga0373940_0001966 Ga0373940_0001966_2558_3496 308
102 3300035114 Ga0373939_0030335 Ga0373939_0030335_132_1070 308
103 3300035398 Ga0316574_0010257 Ga0316574_0010257_4042_4980 308
104 3300035691 Ga0373931_0002357 Ga0373931_0002357_504_1442 308
105 3300036712 Ga0316584_0011779 Ga0316584_0011779_598_1524 308
106 3300036712 Ga0316584_0195516 Ga0316584_0195516_253_1191 308
107 3300037588 Ga0316581_0002145 Ga0316581_0002145_274_1200 308
108 3300038726 Ga0400490_01503 Ga0400490_01503_582_1553 308
109 3300038735 Ga0400485_03949 Ga0400485_03949_39_974 308
110 3300038742 Ga0400486_12015 Ga0400486_12015_183_1118 308
111 3300045051 Ga0451576_0047068 Ga0451576_0047068_1193_2119 308
112 3300045051 Ga0451576_0704574 Ga0451576_0704574_76_1002 308
113 3300049571 Ga0501034_0000014 Ga0501034_0000014_21228_22160 308
114 3300049572 Ga0501036_0001249 Ga0501036_0001249_5869_6801 308
115 3300049575 Ga0501039_0000087 Ga0501039_0000087_60342_61274 308
116 3300049579 Ga0501043_0043098 Ga0501043_0043098_832_1764 308
117 3300049580 Ga0501046_0004992 Ga0501046_0004992_6039_6971 308
118 3300049580 Ga0501046_0036259 Ga0501046_0036259_1117_2049 308
119 3300049581 Ga0501047_0000201 Ga0501047_0000201_17064_17996 308
120 3300049581 Ga0501047_0016274 Ga0501047_0016274_2012_2944 308
121 3300049581 Ga0501047_0109872 Ga0501047_0109872_1289_2221 308
122 3300049582 Ga0501048_0246136 Ga0501048_0246136_190_1122 308
123 3300049583 Ga0501067_0003486 Ga0501067_0003486_1569_2501 308
124 3300049583 Ga0501067_0003728 Ga0501067_0003728_1924_2856 308
125 3300049589 Ga0501073_0007946 Ga0501073_0007946_5422_6354 308
126 3300049589 Ga0501073_0054988 Ga0501073_0054988_936_1868 308
127 3300049742 Ga0501080_0000010 Ga0501080_0000010_32388_33320 308
128 3300049822 Ga0501035_0000077 Ga0501035_0000077_25122_26054 308
129 3300049823 Ga0501044_0000473 Ga0501044_0000473_28239_29171 308
130 3300049823 Ga0501044_0193993 Ga0501044_0193993_921_1853 308
131 3300049824 Ga0501045_0184916 Ga0501045_0184916_231_1163 308
132 3300050511 nmdc:mga08y16_25286_c1 nmdc:mga08y16_25286_c1_1579_2517 308
133 3300050512 nmdc:mga0n895_143637_c1 nmdc:mga0n895_143637_c1_1404_2342 308
134 3300050513 nmdc:mga0rr50_51477_c1 nmdc:mga0rr50_51477_c1_1363_2301 308
135 3300050515 nmdc:mga0a205_42140_c1 nmdc:mga0a205_42140_c1_1506_2444 308
136 3300060353 Ga0501082_0002709 Ga0501082_0002709_5236_6168 308
137 3300005293 Ga0065715_10100143 Ga0065715_101001434 309
138 3300005545 Ga0070695_100362962 Ga0070695_1003629621 309
139 3300005937 Ga0081455_10000068 Ga0081455_1000006820 309
140 3300006852 Ga0075433_10208117 Ga0075433_102081172 309
141 3300006871 Ga0075434_100006930 Ga0075434_1000069303 309
142 3300006871 Ga0075434_100466505 Ga0075434_1004665052 309
143 3300007076 Ga0075435_100134423 Ga0075435_1001344232 309
144 3300009094 Ga0111539_10398469 Ga0111539_103984692 309
145 3300014326 Ga0157380_10371054 Ga0157380_103710542 309
146 3300025932 Ga0207690_10231170 Ga0207690_102311702 309
147 3300025937 Ga0207669_10133944 Ga0207669_101339442 309
148 3300031235 Ga0265330_10016516 Ga0265330_100165162 309
149 3300031239 Ga0265328_10000011 Ga0265328_10000011166 309
150 3300031239 Ga0265328_10000708 Ga0265328_100007084 309
151 3300031242 Ga0265329_10008781 Ga0265329_100087814 309
152 3300031250 Ga0265331_10002771 Ga0265331_1000277110 309
153 3300031250 Ga0265331_10007582 Ga0265331_100075822 309
154 3300031251 Ga0265327_10007722 Ga0265327_100077229 309
155 3300031251 Ga0265327_10029151 Ga0265327_100291513 309
156 3300031344 Ga0265316_10002472 Ga0265316_1000247218 309
157 3300031344 Ga0265316_10074054 Ga0265316_100740542 309
158 3300046460 Ga0495638_0211611 Ga0495638_0211611_109_1050 309
159 3300046660 Ga0495625_0130322 Ga0495625_0130322_395_1336 309
160 3300050512 nmdc:mga0n895_8291_c1 nmdc:mga0n895_8291_c1_559_1542 309
161 3300050513 nmdc:mga0rr50_55860_c1 nmdc:mga0rr50_55860_c1_795_1778 309
162 3300050515 nmdc:mga0a205_479553_c1 nmdc:mga0a205_479553_c1_128_1057 309
163 3300053153 Ga0500616_0008644 Ga0500616_0008644_5303_6244 309

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00551

Formyl_trans_N

Formyl transferase

32

211

0.95

PF02911

Formyl_trans_C

Formyl transferase, C-terminal domain

234

331

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
5uai-assembly1.cif.gz_A crystal structure of methionyl-trna formyltransferase from pseudomonas aeruginosa 0.9212 2 308
2fmt-assembly2.cif.gz_B methionyl-trnafmet formyltransferase complexed with formyl-methionyl-trnafmet 0.9194 1 308
2fmt-assembly2.cif.gz_B methionyl-trnafmet formyltransferase complexed with formyl-methionyl-trnafmet 0.9138 1 308
4iqf-assembly2.cif.gz_B crystal structure of methyionyl-trna formyltransferase from bacillus anthracis 0.9129 2 309
5uai-assembly1.cif.gz_A crystal structure of methionyl-trna formyltransferase from pseudomonas aeruginosa 0.9127 2 308
ID Description Score Start End Superfamily
3tqqA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Formyl transferase, N-terminal domain 0.9639 2 205 3.40.50.170
3tqqA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Formyl transferase, N-terminal domain 0.9493 2 205 3.40.50.170
3rfoA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Formyl transferase, N-terminal domain 0.9442 2 205 3.40.50.170
af_B4FRN6_28_246_3.40.50.170 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Formyl transferase, N-terminal domain 0.9344 2 205 3.40.50.170
3rfoA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Formyl transferase, N-terminal domain 0.9219 2 205 3.40.50.170
ID Description Score Start End GO Terms
AF-A0A2E9V837-F1-model_v4 Methionyl-tRNA formyltransferase (EC 2.1.2.9) 0.9703 1 307 GO:0004479
GO:0005829
AF-A0A8A8PN39-F1-model_v4 deleted 0.9673 201 308
AF-A0A376FF32-F1-model_v4 Methionyl-tRNA formyltransferase (EC 2.1.2.9) 0.9643 1 206 GO:0004479
GO:0005829
AF-A0A2E9V837-F1-model_v4 Methionyl-tRNA formyltransferase (EC 2.1.2.9) 0.964 1 307 GO:0004479
GO:0005829
AF-A0A257Q344-F1-model_v4 methionyl-tRNA formyltransferase (EC 2.1.2.9) 0.9629 1 199 GO:0004479
GO:0005829

Feature Viewer

pLDDT pTM Quality
94.97 0.91 High
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Predicted Structure (AlphaFold2)

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