F240653

General Info

Members Datasets Scaffolds Average Seq Length
163 108 163 326

Family's Representative Sequence

Representative Sequence 3300003320|rootH2_10171903|rootH2_101719032
Length 372
Sequence MSIKRWIDLRPDFPVGLYSCAIVIRGENPRPATRFQPMSDPVPSIANATIEEIGEVLKNHESFVLISHIRPDGDAIGSQLALGYALIAAGKKVRLINEDGLPESLAFMAGSELIETPPVEPLDVEVAIALDTATRPRLGDHALNAASKAKLWLNIDHHISNPKYGDLNLIDSTSPATGQILYKLILALGLPLPAESRDAIYVAVSTDTGSFQYPSTTAETYDMGADLIRRGLNVGQINSDIYDSHPYRRVGLMRALLNTLEVSESGAVASWEMRDQTRIDLQLRPEDSEGLIDIIRAIRGVLLAVFFEELPDGKIRISMRSKDQRLDVCKIATEFGGGGHTLAAGIRMAGPLEEAKQLVLAAIHRRIAEAGI

Samples

Sample ID Description Type Environment
1 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005272 Switchgrass rhizosphere microbial communities from Buena Vista Grasslands Wildlife Area, Michigan, USA - BV2.1 v1 Metagenome Rhizosphere
7 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
41 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
42 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
43 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
44 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
45 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
46 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
68 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
69 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
70 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
71 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
72 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
73 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
74 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
75 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
76 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
77 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
78 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
79 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
80 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
81 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
82 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
83 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
84 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
85 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
86 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
87 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
88 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
89 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
90 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
91 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
92 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
93 3300042126 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218F_E14_070516_87 Metagenome Rhizosphere
94 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
95 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
96 3300042144 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624F_E14_070516_89 Metagenome Rhizosphere
97 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
98 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
99 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
100 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
101 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
102 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
103 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
104 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
106 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
107 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
108 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.45
Nodule 0
Rhizoplane 0
Rhizosphere 85.28
Stem 0
Stem Tuber 0
Unclassified 12.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MBSR1b_contig_1100004 2162886012 Bacteria 2175
2 rootH1_10059745 3300003316 Bacteria 4697
3 rootH2_10171903 3300003320 Bacteria 1752
4 rootL2_10056722 3300003322 Bacteria 2826
5 rootH1_10000971 3300003323 Bacteria 3376
6 rootH1_10022887 3300003323 Bacteria 5833
7 Ga0065703_1020616 3300005272 Unclassified 1654
8 Ga0065715_10112324 3300005293 Bacteria 2535
9 Ga0070658_10018265 3300005327 Bacteria 5613
10 Ga0068868_100231186 3300005338 Bacteria 1551
11 Ga0070661_100010016 3300005344 Bacteria 6579
12 Ga0070669_100071320 3300005353 Bacteria 2570
13 Ga0070675_100336634 3300005354 Bacteria 1336
14 Ga0070671_100122325 3300005355 Unclassified 2190
15 Ga0070709_10174761 3300005434 Unclassified 1504
16 Ga0070714_100149997 3300005435 Bacteria 2100
17 Ga0070713_100072829 3300005436 Bacteria 2907
18 Ga0070708_100022810 3300005445 Bacteria 5314
19 Ga0070708_100077544 3300005445 Bacteria 3003
20 Ga0068867_100000227 3300005459 Bacteria 36839
21 Ga0070706_100052964 3300005467 Bacteria 3745
22 Ga0070706_100089131 3300005467 Unclassified 2860
23 Ga0070706_100278476 3300005467 Unclassified 1561
24 Ga0070707_100056161 3300005468 Bacteria 3776
25 Ga0070707_100079290 3300005468 Unclassified 3169
26 Ga0070707_100104208 3300005468 Unclassified 2749
27 Ga0070698_100001834 3300005471 Bacteria 23658
28 Ga0070698_100016684 3300005471 Bacteria 7748
29 Ga0070699_100054680 3300005518 Bacteria 3456
30 Ga0070699_100124587 3300005518 Bacteria 2268
31 Ga0070697_100000877 3300005536 Bacteria 22621
32 Ga0070697_100002803 3300005536 Bacteria 13427
33 Ga0070697_100017584 3300005536 Bacteria 5628
34 Ga0068853_100000002 3300005539 Bacteria 485323
35 Ga0068853_100054214 3300005539 Unclassified 3455
36 Ga0068855_100000826 3300005563 Bacteria 38309
37 Ga0068855_100361620 3300005563 Bacteria 1597
38 Ga0070664_100000038 3300005564 Bacteria 80276
39 Ga0068863_100212252 3300005841 Unclassified 1864
40 Ga0068858_100202925 3300005842 Unclassified 1875
41 Ga0068858_100344832 3300005842 Bacteria 1426
42 Ga0068860_100000683 3300005843 Bacteria 39240
43 Ga0081539_10008307 3300005985 Bacteria 9086
44 Ga0070717_10004551 3300006028 Bacteria 10032
45 Ga0070717_10013955 3300006028 Bacteria 6170
46 Ga0070717_10155916 3300006028 Bacteria 1978
47 Ga0097621_100239372 3300006237 Unclassified 1586
48 Ga0075436_100049398 3300006914 Unclassified 2903
49 Ga0075436_100049637 3300006914 Bacteria 2896
50 Ga0105240_10000018 3300009093 Bacteria 434461
51 Ga0105240_10331728 3300009093 Unclassified 1731
52 Ga0105243_10000040 3300009148 Bacteria 160788
53 Ga0105242_10040313 3300009176 Unclassified 3763
54 Ga0105237_10005459 3300009545 Bacteria 14337
55 Ga0157373_10040188 3300013100 Bacteria 3348
56 Ga0157370_10000352 3300013104 Bacteria 58319
57 Ga0157374_10000060 3300013296 Bacteria 115293
58 Ga0157378_10229511 3300013297 Unclassified 1768
59 Ga0157376_10000236 3300014969 Bacteria 38605
60 Ga0157376_10005341 3300014969 Bacteria 8970
61 Ga0213872_10026300 3300021361 Bacteria 2673
62 Ga0213872_10047829 3300021361 Unclassified 1944
63 Ga0213872_10075094 3300021361 Bacteria 1521
64 Ga0213876_10004107 3300021384 Bacteria 8177
65 Ga0213876_10032304 3300021384 Bacteria 2761
66 Ga0213871_10000624 3300021441 Bacteria 5045
67 Ga0209050_1000144 3300025298 Bacteria 168793
68 Ga0207699_10157939 3300025906 Unclassified 1507
69 Ga0207705_10001663 3300025909 Bacteria 17676
70 Ga0207684_10059548 3300025910 Bacteria 3243
71 Ga0207695_10000141 3300025913 Bacteria 215831
72 Ga0207671_10004453 3300025914 Bacteria 13389
73 Ga0207646_10000734 3300025922 Bacteria 42601
74 Ga0207646_10007409 3300025922 Bacteria 11154
75 Ga0207646_10074368 3300025922 Bacteria 3035
76 Ga0207681_10066308 3300025923 Bacteria 2499
77 Ga0207650_10021941 3300025925 Unclassified 4518
78 Ga0207700_10016320 3300025928 Bacteria 4931
79 Ga0207644_10087965 3300025931 Unclassified 2310
80 Ga0207709_10000075 3300025935 Bacteria 174404
81 Ga0207667_10005230 3300025949 Bacteria 15829
82 Ga0207677_10207777 3300026023 Bacteria 1561
83 Ga0207703_10043354 3300026035 Unclassified 3611
84 Ga0207703_10461563 3300026035 Bacteria 1188
85 Ga0207639_10000009 3300026041 Bacteria 432727
86 Ga0207641_10183436 3300026088 Unclassified 1918
87 Ga0207648_10000090 3300026089 Bacteria 85618
88 Ga0207674_10394278 3300026116 Unclassified 1338
89 Ga0268265_10087787 3300028380 Bacteria 2476
90 Ga0268264_10003829 3300028381 Bacteria 12902
91 Ga0265325_10007196 3300031241 Bacteria 6692
92 Ga0265331_10004415 3300031250 Bacteria 8794
93 Ga0265327_10001045 3300031251 Bacteria 38741
94 Ga0265327_10027958 3300031251 Bacteria 3236
95 Ga0307408_100000036 3300031548 Bacteria 197635
96 Ga0307408_100011559 3300031548 Bacteria 5834
97 Ga0307408_100325464 3300031548 Bacteria 1296
98 Ga0316575_10019822 3300031665 Unclassified 2575
99 Ga0316576_10023531 3300031727 Bacteria 4293
100 Ga0316578_10006194 3300031728 Bacteria 5880
101 Ga0316577_10001366 3300031733 Bacteria 11491
102 Ga0316577_10148309 3300031733 Unclassified 1322
103 Ga0307406_10000226 3300031901 Bacteria 34345
104 Ga0307407_10000068 3300031903 Bacteria 40539
105 Ga0307407_10015896 3300031903 Bacteria 3734
106 Ga0307412_10000052 3300031911 Bacteria 150085
107 Ga0307409_100001909 3300031995 Bacteria 10629
108 Ga0307416_100006302 3300032002 Bacteria 7414
109 Ga0307414_10000013 3300032004 Bacteria 310222
110 Ga0307414_10109132 3300032004 Bacteria 2101
111 Ga0307414_10256721 3300032004 Unclassified 1456
112 Ga0316574_0001995 3300035398 Bacteria 10039
113 Ga0373947_0212393 3300035725 Bacteria 1269
114 Ga0316582_0000783 3300036647 Bacteria 12827
115 Ga0316584_0000271 3300036712 Bacteria 26258
116 Ga0316584_0016046 3300036712 Bacteria 5365
117 Ga0316584_0195111 3300036712 Bacteria 1496
118 Ga0436364_0084654 3300037853 Bacteria 3945
119 Ga0436364_0652696 3300037853 Bacteria 5510
120 Ga0395901_0111872 3300038443 Bacteria 2868
121 Ga0400483_014821 3300039062 Bacteria 37522
122 Ga0400483_217429 3300039062 Bacteria 28854
123 Ga0436365_0042250 3300039437 Bacteria 60076
124 Ga0436365_0557686 3300039437 Bacteria 5543
125 Ga0436365_0864940 3300039437 Bacteria 14267
126 Ga0436365_1150834 3300039437 Bacteria 43496
127 Ga0436365_1654920 3300039437 Bacteria 4035
128 Ga0436360_0073007 3300039438 Unclassified 1555
129 Ga0436360_0127682 3300039438 Bacteria 3268
130 Ga0436360_0134735 3300039438 Bacteria 7059
131 Ga0436360_0369325 3300039438 Unclassified 2838
132 Ga0436360_0386171 3300039438 Bacteria 2718
133 Ga0436361_0056732 3300039447 Bacteria 3371
134 Ga0436361_0173956 3300039447 Unclassified 1596
135 Ga0436361_0299155 3300039447 Unclassified 1064
136 Ga0436361_0538102 3300039447 Bacteria 6166
137 Ga0436361_0812530 3300039447 Unclassified 1860
138 Ga0436361_0891629 3300039447 Bacteria 2863
139 Ga0436361_0893445 3300039447 Unclassified 1832
140 Ga0436361_0900742 3300039447 Bacteria 1524
141 Ga0436361_1105818 3300039447 Bacteria 1223
142 Ga0436363_1247318 3300039450 Bacteria 13861
143 Ga0436363_1580914 3300039450 Bacteria 1989
144 Ga0436362_0740283 3300039453 Unclassified 1996
145 Ga0436362_0927392 3300039453 Unclassified 1670
146 Ga0450888_007983 3300042126 Bacteria 1183
147 Ga0450890_000010 3300042127 Bacteria 61254
148 Ga0450892_000378 3300042130 Bacteria 5292
149 Ga0450889_003602 3300042144 Bacteria 1530
150 Ga0450893_0000012 3300042532 Bacteria 17927
151 Ga0450893_0002059 3300042532 Bacteria 3131
152 Ga0453683_0010662 3300044673 Bacteria 6086
153 Ga0453684_0000074 3300044712 Bacteria 438364
154 Ga0451576_0000263 3300045051 Bacteria 128339
155 Ga0495643_0000474 3300046522 Bacteria 51197
156 Ga0496121_0035641 3300048924 Bacteria 4454
157 Ga0496123_0146467 3300048926 Bacteria 1282
158 Ga0501032_0039465 3300049569 Bacteria 3211
159 Ga0501080_0011129 3300049742 Bacteria 8236
160 nmdc:mga08x19_23065_c1 3300050514 Bacteria 3859
161 Ga0500559_0001097 3300053136 Bacteria 16401
162 Ga0500616_0002347 3300053153 Bacteria 15920
163 Ga0500616_0069462 3300053153 Bacteria 1801

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037853 Ga0436364_0084654 Ga0436364_0084654_1776_2645 289
2 3300039437 Ga0436365_1150834 Ga0436365_1150834_35027_35896 289
3 3300039438 Ga0436360_0386171 Ga0436360_0386171_1726_2595 289
4 3300039447 Ga0436361_0299155 Ga0436361_0299155_43_912 289
5 3300039447 Ga0436361_0538102 Ga0436361_0538102_1022_1891 289
6 3300039447 Ga0436361_0812530 Ga0436361_0812530_459_1328 289
7 3300039447 Ga0436361_0893445 Ga0436361_0893445_24_893 289
8 3300039447 Ga0436361_0900742 Ga0436361_0900742_28_897 289
9 3300039453 Ga0436362_0927392 Ga0436362_0927392_693_1562 289
10 3300006028 Ga0070717_10004551 Ga0070717_100045514 314
11 3300025913 Ga0207695_10000141 Ga0207695_1000014119 314
12 3300039062 Ga0400483_014821 Ga0400483_014821_25956_26909 315
13 3300039062 Ga0400483_217429 Ga0400483_217429_11018_11971 315
14 3300044673 Ga0453683_0010662 Ga0453683_0010662_978_1928 315
15 3300045051 Ga0451576_0000263 Ga0451576_0000263_35894_36844 315
16 3300044712 Ga0453684_0000074 Ga0453684_0000074_277200_278153 316
17 3300031251 Ga0265327_10027958 Ga0265327_100279583 317
18 3300031733 Ga0316577_10148309 Ga0316577_101483091 318
19 3300036712 Ga0316584_0016046 Ga0316584_0016046_2218_3183 318
20 3300031665 Ga0316575_10019822 Ga0316575_100198222 319
21 3300031727 Ga0316576_10023531 Ga0316576_100235313 319
22 3300031728 Ga0316578_10006194 Ga0316578_100061944 319
23 3300031733 Ga0316577_10001366 Ga0316577_100013669 319
24 3300035398 Ga0316574_0001995 Ga0316574_0001995_7650_8630 319
25 3300036647 Ga0316582_0000783 Ga0316582_0000783_5051_6031 319
26 3300036712 Ga0316584_0000271 Ga0316584_0000271_9837_10817 319
27 3300036712 Ga0316584_0195111 Ga0316584_0195111_479_1450 319
28 3300031548 Ga0307408_100011559 Ga0307408_1000115595 322
29 3300031901 Ga0307406_10000226 Ga0307406_100002268 322
30 3300031995 Ga0307409_100001909 Ga0307409_10000190910 322
31 3300032004 Ga0307414_10109132 Ga0307414_101091322 322
32 3300039437 Ga0436365_0042250 Ga0436365_0042250_17259_18230 323
33 3300046522 Ga0495643_0000474 Ga0495643_0000474_17398_18372 323
34 3300005841 Ga0068863_100212252 Ga0068863_1002122522 324
35 3300005843 Ga0068860_100000683 Ga0068860_1000006836 324
36 3300026035 Ga0207703_10461563 Ga0207703_104615632 324
37 3300026088 Ga0207641_10183436 Ga0207641_101834363 324
38 3300028381 Ga0268264_10003829 Ga0268264_100038295 324
39 3300039437 Ga0436365_0557686 Ga0436365_0557686_3990_4994 324
40 3300053136 Ga0500559_0001097 Ga0500559_0001097_9240_10217 324
41 3300005434 Ga0070709_10174761 Ga0070709_101747612 325
42 3300005435 Ga0070714_100149997 Ga0070714_1001499973 325
43 3300005436 Ga0070713_100072829 Ga0070713_1000728293 325
44 3300005467 Ga0070706_100089131 Ga0070706_1000891313 325
45 3300005471 Ga0070698_100001834 Ga0070698_10000183415 325
46 3300005518 Ga0070699_100054680 Ga0070699_1000546803 325
47 3300005536 Ga0070697_100017584 Ga0070697_1000175843 325
48 3300005539 Ga0068853_100000002 Ga0068853_100000002112 325
49 3300005563 Ga0068855_100000826 Ga0068855_10000082617 325
50 3300005563 Ga0068855_100361620 Ga0068855_1003616202 325
51 3300005842 Ga0068858_100202925 Ga0068858_1002029252 325
52 3300009093 Ga0105240_10000018 Ga0105240_10000018263 325
53 3300009093 Ga0105240_10331728 Ga0105240_103317282 325
54 3300009545 Ga0105237_10005459 Ga0105237_100054599 325
55 3300021361 Ga0213872_10026300 Ga0213872_100263003 325
56 3300021361 Ga0213872_10047829 Ga0213872_100478292 325
57 3300021361 Ga0213872_10075094 Ga0213872_100750942 325
58 3300021384 Ga0213876_10032304 Ga0213876_100323043 325
59 3300021441 Ga0213871_10000624 Ga0213871_100006245 325
60 3300025906 Ga0207699_10157939 Ga0207699_101579392 325
61 3300025914 Ga0207671_10004453 Ga0207671_1000445312 325
62 3300025922 Ga0207646_10074368 Ga0207646_100743683 325
63 3300025928 Ga0207700_10016320 Ga0207700_100163203 325
64 3300025949 Ga0207667_10005230 Ga0207667_1000523012 325
65 3300026035 Ga0207703_10043354 Ga0207703_100433543 325
66 3300026041 Ga0207639_10000009 Ga0207639_1000000966 325
67 3300031548 Ga0307408_100325464 Ga0307408_1003254642 325
68 3300031903 Ga0307407_10015896 Ga0307407_100158962 325
69 3300032004 Ga0307414_10000013 Ga0307414_10000013214 325
70 3300032004 Ga0307414_10256721 Ga0307414_102567212 325
71 3300037853 Ga0436364_0652696 Ga0436364_0652696_519_1496 325
72 3300038443 Ga0395901_0111872 Ga0395901_0111872_1467_2450 325
73 3300039438 Ga0436360_0073007 Ga0436360_0073007_515_1492 325
74 3300039438 Ga0436360_0127682 Ga0436360_0127682_1828_2808 325
75 3300039438 Ga0436360_0134735 Ga0436360_0134735_665_1642 325
76 3300039438 Ga0436360_0369325 Ga0436360_0369325_1088_2065 325
77 3300039447 Ga0436361_0056732 Ga0436361_0056732_2276_3253 325
78 3300039447 Ga0436361_0173956 Ga0436361_0173956_61_1038 325
79 3300039447 Ga0436361_0891629 Ga0436361_0891629_1256_2233 325
80 3300039447 Ga0436361_1105818 Ga0436361_1105818_207_1184 325
81 3300039450 Ga0436363_1247318 Ga0436363_1247318_4094_5071 325
82 3300039453 Ga0436362_0740283 Ga0436362_0740283_698_1675 325
83 3300048926 Ga0496123_0146467 Ga0496123_0146467_83_1066 325
84 3300049742 Ga0501080_0011129 Ga0501080_0011129_2284_3264 325
85 3300053153 Ga0500616_0069462 Ga0500616_0069462_395_1390 325
86 3300003316 rootH1_10059745 rootH1_100597453 326
87 3300003322 rootL2_10056722 rootL2_100567222 326
88 3300005272 Ga0065703_1020616 Ga0065703_10206163 326
89 3300005445 Ga0070708_100022810 Ga0070708_1000228102 326
90 3300005445 Ga0070708_100077544 Ga0070708_1000775442 326
91 3300005467 Ga0070706_100052964 Ga0070706_1000529642 326
92 3300005467 Ga0070706_100278476 Ga0070706_1002784762 326
93 3300005468 Ga0070707_100056161 Ga0070707_1000561613 326
94 3300005468 Ga0070707_100079290 Ga0070707_1000792903 326
95 3300005468 Ga0070707_100104208 Ga0070707_1001042082 326
96 3300005471 Ga0070698_100016684 Ga0070698_1000166846 326
97 3300005518 Ga0070699_100124587 Ga0070699_1001245873 326
98 3300005536 Ga0070697_100000877 Ga0070697_1000008775 326
99 3300005536 Ga0070697_100002803 Ga0070697_1000028038 326
100 3300005539 Ga0068853_100054214 Ga0068853_1000542142 326
101 3300005985 Ga0081539_10008307 Ga0081539_100083073 326
102 3300006028 Ga0070717_10013955 Ga0070717_100139555 326
103 3300006028 Ga0070717_10155916 Ga0070717_101559162 326
104 3300006237 Ga0097621_100239372 Ga0097621_1002393721 326
105 3300006914 Ga0075436_100049637 Ga0075436_1000496373 326
106 3300009176 Ga0105242_10040313 Ga0105242_100403133 326
107 3300013296 Ga0157374_10000060 Ga0157374_1000006073 326
108 3300013297 Ga0157378_10229511 Ga0157378_102295113 326
109 3300014969 Ga0157376_10000236 Ga0157376_1000023633 326
110 3300025910 Ga0207684_10059548 Ga0207684_100595483 326
111 3300025922 Ga0207646_10000734 Ga0207646_1000073412 326
112 3300025922 Ga0207646_10007409 Ga0207646_100074097 326
113 3300035725 Ga0373947_0212393 Ga0373947_0212393_94_1074 326
114 3300039450 Ga0436363_1580914 Ga0436363_1580914_599_1582 326
115 3300050514 nmdc:mga08x19_23065_c1 nmdc:mga08x19_23065_c1_1852_2832 326
116 2162886012 MBSR1b_contig_1100004 MBSR1b_0817.00002260 327
117 3300003320 rootH2_10171903 rootH2_101719032 327
118 3300003323 rootH1_10000971 rootH1_100009711 327
119 3300003323 rootH1_10022887 rootH1_100228876 327
120 3300005293 Ga0065715_10112324 Ga0065715_101123243 327
121 3300005327 Ga0070658_10018265 Ga0070658_100182652 327
122 3300005338 Ga0068868_100231186 Ga0068868_1002311863 327
123 3300005344 Ga0070661_100010016 Ga0070661_1000100168 327
124 3300005353 Ga0070669_100071320 Ga0070669_1000713203 327
125 3300005354 Ga0070675_100336634 Ga0070675_1003366341 327
126 3300005355 Ga0070671_100122325 Ga0070671_1001223253 327
127 3300005459 Ga0068867_100000227 Ga0068867_1000002275 327
128 3300005564 Ga0070664_100000038 Ga0070664_10000003831 327
129 3300005842 Ga0068858_100344832 Ga0068858_1003448322 327
130 3300006914 Ga0075436_100049398 Ga0075436_1000493982 327
131 3300009148 Ga0105243_10000040 Ga0105243_1000004068 327
132 3300013100 Ga0157373_10040188 Ga0157373_100401883 327
133 3300013104 Ga0157370_10000352 Ga0157370_1000035259 327
134 3300014969 Ga0157376_10005341 Ga0157376_100053416 327
135 3300021384 Ga0213876_10004107 Ga0213876_100041073 327
136 3300025298 Ga0209050_1000144 Ga0209050_100014470 327
137 3300025909 Ga0207705_10001663 Ga0207705_100016634 327
138 3300025923 Ga0207681_10066308 Ga0207681_100663083 327
139 3300025925 Ga0207650_10021941 Ga0207650_100219413 327
140 3300025931 Ga0207644_10087965 Ga0207644_100879652 327
141 3300025935 Ga0207709_10000075 Ga0207709_1000007596 327
142 3300026023 Ga0207677_10207777 Ga0207677_102077771 327
143 3300026089 Ga0207648_10000090 Ga0207648_1000009061 327
144 3300026116 Ga0207674_10394278 Ga0207674_103942782 327
145 3300028380 Ga0268265_10087787 Ga0268265_100877873 327
146 3300031241 Ga0265325_10007196 Ga0265325_100071962 327
147 3300031250 Ga0265331_10004415 Ga0265331_1000441510 327
148 3300031251 Ga0265327_10001045 Ga0265327_1000104522 327
149 3300031548 Ga0307408_100000036 Ga0307408_10000003663 327
150 3300031903 Ga0307407_10000068 Ga0307407_1000006820 327
151 3300031911 Ga0307412_10000052 Ga0307412_1000005270 327
152 3300032002 Ga0307416_100006302 Ga0307416_1000063025 327
153 3300039437 Ga0436365_0864940 Ga0436365_0864940_3314_4420 327
154 3300039437 Ga0436365_1654920 Ga0436365_1654920_2675_3697 327
155 3300042126 Ga0450888_007983 Ga0450888_007983_93_1082 327
156 3300042127 Ga0450890_000010 Ga0450890_000010_6709_7698 327
157 3300042130 Ga0450892_000378 Ga0450892_000378_3503_4492 327
158 3300042144 Ga0450889_003602 Ga0450889_003602_10_999 327
159 3300042532 Ga0450893_0000012 Ga0450893_0000012_12804_13793 327
160 3300042532 Ga0450893_0002059 Ga0450893_0002059_199_1188 327
161 3300048924 Ga0496121_0035641 Ga0496121_0035641_230_1345 327
162 3300049569 Ga0501032_0039465 Ga0501032_0039465_2114_3103 327
163 3300053153 Ga0500616_0002347 Ga0500616_0002347_6341_7330 327

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02272

DHHA1

DHHA1 domain

277

363

0.83

PF01368

DHH

DHH family

62

204

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
5o25-assembly1.cif.gz_A structure of wildtype t.maritima pde (tm1595) in ligand-free state 0.923 4 325
5o25-assembly1.cif.gz_A structure of wildtype t.maritima pde (tm1595) in ligand-free state 0.9202 4 325
5o4z-assembly1.cif.gz_A structure of the inactive t.maritima pde (tm1595) d80n d154n mutant with substrate 5'-papa 0.8976 4 324
5jju-assembly1.cif.gz_B crystal structure of rv2837c complexed with 5'-papa and 5'-amp 0.8876 1 326
5jju-assembly1.cif.gz_B crystal structure of rv2837c complexed with 5'-papa and 5'-amp 0.885 1 326
ID Description Score Start End Superfamily
4ls9B01 Alpha Beta;Alpha-Beta Complex;inorganic pyrophosphatase (n-terminal core);inorganic pyrophosphatase (n-terminal core) 0.9228 1 195 3.90.1640.10
af_Q2FXM3_201_313_3.10.310.30 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1; 0.9138 208 321 3.10.310.30
4ls9B01 Alpha Beta;Alpha-Beta Complex;inorganic pyrophosphatase (n-terminal core);inorganic pyrophosphatase (n-terminal core) 0.9137 1 195 3.90.1640.10
4py9A02 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1; 0.9042 201 324 3.10.310.30
5ippA02 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1; 0.8799 208 323 3.10.310.30
ID Description Score Start End GO Terms
AF-A0A2V5QKR9-F1-model_v4 Bifunctional oligoribonuclease/PAP phosphatase NrnA 0.988 243 324 GO:0003676
AF-A0A2V5M4R8-F1-model_v4 DDH domain-containing protein 0.9777 2 134
AF-A0A4V1S6H3-F1-model_v4 DDH domain-containing protein 0.9714 1 209
AF-A0A7X9GBH0-F1-model_v4 Bifunctional oligoribonuclease/PAP phosphatase NrnA 0.9668 200 321 GO:0003676
AF-A0A2V5M4R8-F1-model_v4 DDH domain-containing protein 0.9634 2 134

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pLDDT pTM Quality
95.23 0.92 High
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Predicted Structure (AlphaFold2)

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