F239672

General Info

Members Datasets Scaffolds Average Seq Length
162 136 324 312

Family's Representative Sequence

Representative Sequence 3300032002|Ga0307416_100414294|Ga0307416_1004142942
Length 332
Sequence MTTVPEDAVKGATITAAATVPAPVDTTPPPGVVKSARRKLTSPVASIFALLIAVVWTIPTFGLLVSSFRPEDEIKTTGWWNAFTNPDFTFENYQEVVFGESSSSGQLAAFFVNSLVITIPSVLFPLAFASFAAYALSWMRFRGRDWIYIGIFALQIVPLQMALVPLLSFFSRGVTLGGITLMPAWQLEGSERFIQVWFAHTCFALPLGIFLLHNFMAELPKDLIEAAKVDGAGHARIFSRVVLPLIIPALASFGIFQFLWVWNDLLVGLIFAGGDRDSAPMTVRLAQLTGERGNEWQRLTSGAFVSVLLPLIVFLSLQRYFVRGLLAGSVKG

Samples

Sample ID Description Type Environment
1 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
6 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
9 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
10 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
11 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
12 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
13 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
14 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
15 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
16 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
17 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
18 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
20 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
21 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
22 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
23 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
24 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
25 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
34 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
35 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
36 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
37 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
38 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
39 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
40 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
41 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
42 3300041462 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG Metagenome Rhizoplane
43 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
44 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
45 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
46 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
47 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
48 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
49 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
50 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
51 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
52 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
53 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
54 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
55 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
56 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
57 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
58 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
59 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
60 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
61 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
62 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
63 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
64 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
65 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
66 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
67 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
68 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
69 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
70 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
71 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
72 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
76 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
77 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
78 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
79 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
80 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
81 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
82 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
83 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
84 3300059512 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 57R_AW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
85 3300059652 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 72R_SD_T2_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
86 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
87 2501939600 Micromonospora sp. L5 Isolate Unclassified
88 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
89 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
90 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
91 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
92 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
93 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
94 2654587600 Glutamicibacter halophytocola KLBMP5180 Isolate Unclassified
95 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
96 2835188231 Isoptericola variabilis JZ7 Isolate Unclassified
97 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
98 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
99 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
100 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
101 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
102 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
103 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
104 2858868258 Micromonospora sp. MH33 Isolate Unclassified
105 2858882152 Micromonospora noduli MED15 Isolate Nodule
106 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
107 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
108 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
109 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
110 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
111 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
112 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
113 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
114 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
115 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
116 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
117 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
118 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
119 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
120 2902582711 Micromonospora sp. AP08 Isolate Unclassified
121 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
122 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
123 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
124 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
125 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
126 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
127 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
128 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
129 649633069 Micromonospora sp. L5 Isolate Unclassified
130 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
131 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
132 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
133 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
134 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
135 8056060235 Nocardiopsis endophytica RSe5-2 Isolate Unclassified
136 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 67.28
Metatranscriptomes 1.85
Isolates 30.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.85
Nodule 2.47
Rhizoplane 4.94
Rhizosphere 58.02
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307416_100414294 3300032002 Bacteria 1389
2 JGI24740J21852_10005094 3300001979 Bacteria 5581
3 Ga0070658_10164775 3300005327 Bacteria 1861
4 Ga0070683_100005556 3300005329 Bacteria 10529
5 Ga0070683_100249921 3300005329 Bacteria 1686
6 Ga0070683_100437619 3300005329 Bacteria 1248
7 Ga0070667_100007806 3300005367 Bacteria 8873
8 Ga0070663_100064985 3300005455 Bacteria 2639
9 Ga0070679_100482562 3300005530 Bacteria 1184
10 Ga0070684_100000803 3300005535 Bacteria 21845
11 Ga0070684_100314567 3300005535 Bacteria 1438
12 Ga0070696_100000773 3300005546 Bacteria 20568
13 Ga0070664_100443457 3300005564 Bacteria 1191
14 Ga0068859_100001140 3300005617 Bacteria 27061
15 Ga0068859_100157841 3300005617 Bacteria 2347
16 Ga0081539_10000116 3300005985 Bacteria 186861
17 Ga0075428_100000283 3300006844 Bacteria 49810
18 Ga0075430_100001744 3300006846 Bacteria 17763
19 Ga0075431_100229122 3300006847 Bacteria 1893
20 Ga0097620_100001140 3300006931 Bacteria 27061
21 Ga0097620_100157844 3300006931 Bacteria 2347
22 Ga0105247_10002811 3300009101 Bacteria 11633
23 Ga0114129_10784292 3300009147 Bacteria 1217
24 Ga0105248_10019892 3300009177 Bacteria 7434
25 Ga0105237_10016871 3300009545 Bacteria 7577
26 Ga0105238_10363691 3300009551 Bacteria 1436
27 Ga0157370_10482019 3300013104 Bacteria 1140
28 Ga0157372_10140306 3300013307 Bacteria 2784
29 Ga0206353_10668926 3300020082 Bacteria 2499
30 Ga0207710_10005331 3300025900 Bacteria 5547
31 Ga0207705_10014718 3300025909 Bacteria 5626
32 Ga0207671_10084200 3300025914 Bacteria 2388
33 Ga0207709_10343663 3300025935 Bacteria 1124
34 Ga0207661_10005433 3300025944 Bacteria 8980
35 Ga0207679_10055145 3300025945 Bacteria 2928
36 Ga0207703_10597360 3300026035 Bacteria 1044
37 Ga0207678_10079261 3300026067 Bacteria 2813
38 Ga0207678_10146977 3300026067 Bacteria 2012
39 Ga0265334_10001511 3300028573 Bacteria 11233
40 Ga0307513_10004128 3300031456 Bacteria 19469
41 Ga0307408_100179033 3300031548 Bacteria 1699
42 Ga0307514_10135910 3300031649 Bacteria 1683
43 Ga0316579_10000029 3300031691 Bacteria 32210
44 Ga0307518_10078721 3300031838 Bacteria 2381
45 Ga0307406_10158225 3300031901 Bacteria 1625
46 Ga0307412_10028198 3300031911 Bacteria 3510
47 Ga0307415_100068107 3300032126 Bacteria 2490
48 Ga0307415_100086149 3300032126 Bacteria 2260
49 Ga0451806_638490 3300041462 Bacteria 1435
50 Ga0466972_0008620 3300044658 Bacteria 5115
51 Ga0466966_0025295 3300044684 Bacteria 3879
52 Ga0466963_0012447 3300044694 Bacteria 5206
53 Ga0466963_0026541 3300044694 Bacteria 3705
54 Ga0466970_0000147 3300044765 Bacteria 32640
55 Ga0466970_0159034 3300044765 Bacteria 1249
56 Ga0466957_0033422 3300044842 Bacteria 3086
57 Ga0466959_0173184 3300045049 Bacteria 1513
58 Ga0466958_0003476 3300045836 Bacteria 8176
59 Ga0466967_0123678 3300045976 Bacteria 2394
60 Ga0495650_0019074 3300046471 Bacteria 3388
61 Ga0495594_0042792 3300046499 Bacteria 2481
62 Ga0495594_0082519 3300046499 Bacteria 1796
63 Ga0495606_0004846 3300046507 Bacteria 13205
64 Ga0495668_0000284 3300046616 Bacteria 70078
65 Ga0495625_0003703 3300046660 Bacteria 14925
66 Ga0495626_0000476 3300048091 Bacteria 40531
67 Ga0496101_0124923 3300048904 Bacteria 1949
68 Ga0496102_0000271 3300048905 Bacteria 66136
69 Ga0496103_0000053 3300048906 Bacteria 148944
70 Ga0496108_0254089 3300048911 Bacteria 1529
71 Ga0496113_0064351 3300048916 Bacteria 2773
72 Ga0496114_0082167 3300048917 Bacteria 2723
73 Ga0496114_0095073 3300048917 Bacteria 2535
74 Ga0496117_0014152 3300048920 Bacteria 6896
75 Ga0496118_0020378 3300048921 Bacteria 5880
76 Ga0496118_0176599 3300048921 Bacteria 1297
77 Ga0496119_0014995 3300048922 Bacteria 6014
78 Ga0496119_0018839 3300048922 Bacteria 5114
79 Ga0496119_0109922 3300048922 Bacteria 1532
80 Ga0496120_0009998 3300048923 Bacteria 6665
81 Ga0496120_0022231 3300048923 Bacteria 3992
82 Ga0496120_0024569 3300048923 Bacteria 3754
83 Ga0496120_0118638 3300048923 Bacteria 1371
84 Ga0496122_0000095 3300048925 Bacteria 200509
85 Ga0496122_0001462 3300048925 Bacteria 38062
86 Ga0496122_0025432 3300048925 Bacteria 5140
87 Ga0496123_0000100 3300048926 Bacteria 170019
88 Ga0496123_0001002 3300048926 Bacteria 43227
89 Ga0496123_0003239 3300048926 Bacteria 18524
90 Ga0496124_0001171 3300048927 Bacteria 41048
91 Ga0496124_0002498 3300048927 Bacteria 23933
92 Ga0496125_0000873 3300048928 Bacteria 48023
93 Ga0496125_0026174 3300048928 Bacteria 5324
94 Ga0496125_0046360 3300048928 Bacteria 3647
95 Ga0496126_0196073 3300048929 Bacteria 1708
96 Ga0496126_0219774 3300048929 Bacteria 1596
97 Ga0501034_0128050 3300049571 Bacteria 2524
98 Ga0501038_0012996 3300049574 Bacteria 7595
99 Ga0501047_0052018 3300049581 Bacteria 3959
100 Ga0501070_0387618 3300049586 Bacteria 1131
101 Ga0501071_0002728 3300049587 Bacteria 10823
102 Ga0501035_0264983 3300049822 Bacteria 1456
103 nmdc:mga09592_350079_c1 3300050508 Bacteria 1278
104 nmdc:mga0qj67_17777_c1 3300050509 Bacteria 5408
105 nmdc:mga0qj67_862_c1 3300050509 Bacteria 20819
106 nmdc:mga06r32_111892_c1 3300050510 Bacteria 2687
107 Ga0500635_0006914 3300053080 Bacteria 3052
108 Ga0500651_0004271 3300053093 Bacteria 7981
109 Ga0500568_0000058 3300053139 Bacteria 108853
110 Ga0587092_002322 3300059512 Bacteria 2023
111 Ga0587107_002318 3300059652 Bacteria 1706
112 Ga0466962_0005661 3300061719 Bacteria 6005
113 2501939701 2501939600 Bacteria 6907073
114 2515497400 2515154088 Bacteria 5526283
115 2515720953 2515154129 Bacteria 5584369
116 2515758269 2515154137 Bacteria 5711575
117 2516082693 2515154202 Bacteria 5471270
118 2516091848 2515154203 Bacteria 5458536
119 2555229769 2554235227 Bacteria 3637389
120 2655031810 2654587600 Bacteria 3911798
121 2831937622 2831935698 Bacteria 5963223
122 2835188448 2835188231 Bacteria 3476928
123 2839989236 2839986021 Bacteria 3685650
124 2852679222 2852677369 Bacteria 3768884
125 2855673583 2855670206 Bacteria 7120389
126 2855677888 2855676851 Bacteria 7063653
127 2856858330 2856858025 Bacteria 7255264
128 2857291046 2857288857 Bacteria 7189066
129 2858854071 2858848962 Bacteria 6963058
130 2858873718 2858868258 Bacteria 7683772
131 2858887052 2858882152 Bacteria 7230291
132 2858894443 2858888857 Bacteria 7060307
133 2858896360 2858895516 Bacteria 7378898
134 2858907320 2858902515 Bacteria 7086037
135 2867306999 2867302475 Bacteria 7087181
136 2867316890 2867312974 Bacteria 7058875
137 2867325269 2867319477 Bacteria 7069771
138 2867508172 2867507094 Bacteria 6506033
139 2869048950 2869048445 Bacteria 6875584
140 2869064282 2869061728 Bacteria 7112407
141 2869069418 2869068681 Bacteria 7205615
142 2873151727 2873151551 Bacteria 8625867
143 2880495707 2880489317 Bacteria 7096270
144 2880496644 2880495981 Bacteria 7340502
145 2887485941 2887478801 Bacteria 8972725
146 2902584017 2902582711 Bacteria 6187705
147 2929225271 2929219909 Bacteria 6984360
148 2929231751 2929226422 Bacteria 7248583
149 2946036644 2946033335 Bacteria 3835514
150 2964327555 2964326757 Bacteria 3290868
151 2966923192 2966921586 Bacteria 3092803
152 2966926331 2966924647 Bacteria 3268643
153 2996224368 2996221748 Bacteria 6799777
154 3006492515 3006486233 Bacteria 8157040
155 649813433 649633069 Bacteria 6962533
156 8001786750 8001781756 Bacteria 9586736
157 8003833375 8003830390 Bacteria 6541657
158 8003872603 8003870546 Bacteria 7396674
159 8054730081 8054727385 Bacteria 7558670
160 8054736085 8054734606 Bacteria 6947278
161 8056063227 8056060235 Bacteria 7259403
162 8057346038 8057345674 Bacteria 4160394
163 Ga0307416_100414294
164 JGI24740J21852_10005094
165 Ga0070658_10164775
166 Ga0070683_100005556
167 Ga0070683_100249921
168 Ga0070683_100437619
169 Ga0070667_100007806
170 Ga0070663_100064985
171 Ga0070679_100482562
172 Ga0070684_100000803
173 Ga0070684_100314567
174 Ga0070696_100000773
175 Ga0070664_100443457
176 Ga0068859_100001140
177 Ga0068859_100157841
178 Ga0081539_10000116
179 Ga0075428_100000283
180 Ga0075430_100001744
181 Ga0075431_100229122
182 Ga0097620_100001140
183 Ga0097620_100157844
184 Ga0105247_10002811
185 Ga0114129_10784292
186 Ga0105248_10019892
187 Ga0105237_10016871
188 Ga0105238_10363691
189 Ga0157370_10482019
190 Ga0157372_10140306
191 Ga0206353_10668926
192 Ga0207710_10005331
193 Ga0207705_10014718
194 Ga0207671_10084200
195 Ga0207709_10343663
196 Ga0207661_10005433
197 Ga0207679_10055145
198 Ga0207703_10597360
199 Ga0207678_10079261
200 Ga0207678_10146977
201 Ga0265334_10001511
202 Ga0307513_10004128
203 Ga0307408_100179033
204 Ga0307514_10135910
205 Ga0316579_10000029
206 Ga0307518_10078721
207 Ga0307406_10158225
208 Ga0307412_10028198
209 Ga0307415_100068107
210 Ga0307415_100086149
211 Ga0451806_638490
212 Ga0466972_0008620
213 Ga0466966_0025295
214 Ga0466963_0012447
215 Ga0466963_0026541
216 Ga0466970_0000147
217 Ga0466970_0159034
218 Ga0466957_0033422
219 Ga0466959_0173184
220 Ga0466958_0003476
221 Ga0466967_0123678
222 Ga0495650_0019074
223 Ga0495594_0042792
224 Ga0495594_0082519
225 Ga0495606_0004846
226 Ga0495668_0000284
227 Ga0495625_0003703
228 Ga0495626_0000476
229 Ga0496101_0124923
230 Ga0496102_0000271
231 Ga0496103_0000053
232 Ga0496108_0254089
233 Ga0496113_0064351
234 Ga0496114_0082167
235 Ga0496114_0095073
236 Ga0496117_0014152
237 Ga0496118_0020378
238 Ga0496118_0176599
239 Ga0496119_0014995
240 Ga0496119_0018839
241 Ga0496119_0109922
242 Ga0496120_0009998
243 Ga0496120_0022231
244 Ga0496120_0024569
245 Ga0496120_0118638
246 Ga0496122_0000095
247 Ga0496122_0001462
248 Ga0496122_0025432
249 Ga0496123_0000100
250 Ga0496123_0001002
251 Ga0496123_0003239
252 Ga0496124_0001171
253 Ga0496124_0002498
254 Ga0496125_0000873
255 Ga0496125_0026174
256 Ga0496125_0046360
257 Ga0496126_0196073
258 Ga0496126_0219774
259 Ga0501034_0128050
260 Ga0501038_0012996
261 Ga0501047_0052018
262 Ga0501070_0387618
263 Ga0501071_0002728
264 Ga0501035_0264983
265 nmdc:mga09592_350079_c1
266 nmdc:mga0qj67_17777_c1
267 nmdc:mga0qj67_862_c1
268 nmdc:mga06r32_111892_c1
269 Ga0500635_0006914
270 Ga0500651_0004271
271 Ga0500568_0000058
272 Ga0587092_002322
273 Ga0587107_002318
274 Ga0466962_0005661
275 2501939701
276 2515497400
277 2515720953
278 2515758269
279 2516082693
280 2516091848
281 2555229769
282 2655031810
283 2831937622
284 2835188448
285 2839989236
286 2852679222
287 2855673583
288 2855677888
289 2856858330
290 2857291046
291 2858854071
292 2858873718
293 2858887052
294 2858894443
295 2858896360
296 2858907320
297 2867306999
298 2867316890
299 2867325269
300 2867508172
301 2869048950
302 2869064282
303 2869069418
304 2873151727
305 2880495707
306 2880496644
307 2887485941
308 2902584017
309 2929225271
310 2929231751
311 2946036644
312 2964327555
313 2966923192
314 2966926331
315 2996224368
316 3006492515
317 649813433
318 8001786750
319 8003833375
320 8003872603
321 8054730081
322 8054736085
323 8056063227
324 8057346038

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

125

326

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
7cad-assembly1.cif.gz_B mycobacterium smegmatis sugabc complex 0.7817 38 322
8ja7-assembly1.cif.gz_A cryo-em structure of mycobacterium tuberculosis lpqy-sugabc in complex with trehalose 0.7751 27 311
8hpn-assembly1.cif.gz_B lpqy-sugabc in state 3 0.7673 38 313
7cad-assembly1.cif.gz_B mycobacterium smegmatis sugabc complex 0.7596 38 322
8ja7-assembly1.cif.gz_A cryo-em structure of mycobacterium tuberculosis lpqy-sugabc in complex with trehalose 0.7533 27 311
ID Description Score Start End Superfamily
af_I6Y1U3_2_266_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8454 30 312 1.10.3720.10
af_I6Y1U3_2_266_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8336 30 312 1.10.3720.10
af_P0AFK6_8_259_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8283 41 311 1.10.3720.10
af_P0AFR9_7_261_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8256 34 314 1.10.3720.10
af_P0AFR9_7_261_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8198 34 314 1.10.3720.10
ID Description Score Start End GO Terms
AF-A0A399YDQ6-F1-model_v4 Sugar ABC transporter permease 0.9219 51 318 GO:0005886
GO:0055085
AF-A0A7X7JWS6-F1-model_v4 Carbohydrate ABC transporter permease 0.9189 100 319 GO:0005886
GO:0055085
AF-A0A7T7L5T1-F1-model_v4 Carbohydrate ABC transporter permease 0.9127 38 319 GO:0005886
GO:0055085
AF-A0A6G4XLN8-F1-model_v4 Carbohydrate ABC transporter permease 0.9108 45 319 GO:0005886
GO:0055085
AF-A0A4R8VC15-F1-model_v4 Carbohydrate ABC transporter permease 0.9092 38 320 GO:0005886
GO:0055085

Map