F239259

General Info

Members Datasets Scaffolds Average Seq Length
162 102 156 715

Family's Representative Sequence

Representative Sequence 3300013104|Ga0157370_10000263|Ga0157370_1000026349
Length 748
Sequence MCFHLAKTLDASGKNNQFSLSKMTSILQKNCAISVKLFYKLTHMKFFFCMGIILFFSCNSTHIKKYDTWNKYGANYENNRYSSLTQIDTGNVAQLQVAWTYHCGDADTLTQIQVNPVIADSVLYGVSPKLKLFALNAATGKPLWIFDPFDTTVTEVKGLGYFSMNVCRGVSYYSDGKNDKRIFYGAGSRLLCIDASTGKLIHSFGNNGSIDLHNDLGEDASQLYVSLTTPGLVYKDMIIVGDRLSEEMPAAPGHIRAYNVHTGKLQWIFHTIPQPGEPGYETWDNKEAYKHVGGANCWSGFSLDENRGILFVPTGSAVFDFYGGKRTGADLYADCLIALDVNTGKRIWHFQTVHHDLWDRDLPTAPALVTITKDGKKIDAVAQPTKSGFIFLFDRETGKPVYPIEEKPVPTTSELIGEKPYPARQVLNEKDLNHLIADSSYEDIKQKIASYKTGFIFNPPSKEGTIIFPGFDGGGEWGGPALDPTTGIIYINASEMPWVLTMIDVKKEIKNNENNLQAGKRLYAATCLTCHGPDRKGAGNYPSLIEVDKKYSEQQFLQLISTGRRMMPAFNQLAESEKKAIASYILDRKDEQQQKFIAPVHPSDDWNKLPYTSTGYNKFLTKEGYPAVRPPWGTLNAIDLNTGKLLWKDTLGDYPELKAKGIHSGTENYGGPAVTAGGLIFIAATSDAKFRAFNKRTGQLLWETDLPACGFATPSVYEVNGKEYVVIACGGGKLKKKSGDAYMAFALL

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2738541284 Pedobacter sp. YR016 Isolate Unclassified
3 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
4 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
5 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
6 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
7 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
8 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
9 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
10 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
11 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
12 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
13 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
14 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
15 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
16 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
17 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
18 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
19 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
20 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
21 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
22 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
23 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
24 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
27 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
30 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
31 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
32 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
37 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
38 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
42 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
43 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
44 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
45 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
46 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
47 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
48 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
49 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
50 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
51 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
52 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
55 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
56 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
57 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
80 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
81 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
82 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
83 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
84 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
85 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
86 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
87 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
88 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
89 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
90 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
91 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
92 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
93 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
94 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
95 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
96 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
97 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
98 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
99 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
100 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
101 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
102 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.68
Metatranscriptomes 0
Isolates 4.32

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.47
Nodule 0
Rhizoplane 0
Rhizosphere 88.89
Stem 0
Stem Tuber 0
Unclassified 8.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_341942 2162886007 Bacteria 47645
2 rootH1_10072367 3300003316 Bacteria 7950
3 rootH1_10072367 3300003323 Unclassified 2315
4 rootH2_10003167 3300003320 Bacteria 45886
5 rootH2_10004606 3300003320 Bacteria 102673
6 rootH2_10040443 3300003320 Bacteria 19021
7 JGI25160J50197_1001046 3300003354 Bacteria 14268
8 Ga0065714_10002431 3300005288 Bacteria 29565
9 Ga0065714_10002537 3300005288 Bacteria 27651
10 Ga0065704_10000254 3300005289 Bacteria 51402
11 Ga0065704_10074516 3300005289 Bacteria 6216
12 Ga0065704_10078326 3300005289 Bacteria 4463
13 Ga0070658_10000027 3300005327 Bacteria 164254
14 Ga0070676_10000794 3300005328 Bacteria 15592
15 Ga0070680_100048404 3300005336 Bacteria 3464
16 Ga0070660_100069751 3300005339 Bacteria 2742
17 Ga0070673_100011968 3300005364 Bacteria 5941
18 Ga0070673_100027411 3300005364 Unclassified 4223
19 Ga0070659_100081844 3300005366 Unclassified 2579
20 Ga0070663_100004151 3300005455 Bacteria 8463
21 Ga0070662_100000281 3300005457 Bacteria 30079
22 Ga0068867_100007858 3300005459 Bacteria 7537
23 Ga0068867_100016557 3300005459 Bacteria 5235
24 Ga0070698_100000842 3300005471 Bacteria 33593
25 Ga0070698_100009065 3300005471 Bacteria 10695
26 Ga0070698_100021251 3300005471 Bacteria 6800
27 Ga0070679_100057346 3300005530 Bacteria 3882
28 Ga0068853_100000502 3300005539 Bacteria 26729
29 Ga0070672_100028861 3300005543 Bacteria 4155
30 Ga0070665_100000178 3300005548 Bacteria 113002
31 Ga0068855_100029160 3300005563 Bacteria 6599
32 Ga0068855_100036755 3300005563 Bacteria 5827
33 Ga0068857_100049756 3300005577 Bacteria 3718
34 Ga0068852_100000186 3300005616 Bacteria 42147
35 Ga0068852_100000732 3300005616 Bacteria 21522
36 Ga0068859_100001033 3300005617 Bacteria 28515
37 Ga0068870_10009545 3300005840 Bacteria 4420
38 Ga0068860_100009410 3300005843 Bacteria 9711
39 Ga0068860_100012030 3300005843 Bacteria 8522
40 Ga0097621_100000917 3300006237 Bacteria 20622
41 Ga0097621_100053142 3300006237 Bacteria 3302
42 Ga0068871_100001037 3300006358 Bacteria 18605
43 Ga0075430_100006583 3300006846 Bacteria 9790
44 Ga0075430_100030197 3300006846 Bacteria 4602
45 Ga0075429_100022687 3300006880 Bacteria 5441
46 Ga0068865_100000129 3300006881 Bacteria 39057
47 Ga0097620_100001033 3300006931 Bacteria 28515
48 Ga0105240_10000095 3300009093 Bacteria 180935
49 Ga0105240_10000155 3300009093 Bacteria 140485
50 Ga0105240_10003959 3300009093 Bacteria 22879
51 Ga0105240_10004547 3300009093 Bacteria 21059
52 Ga0105240_10014544 3300009093 Bacteria 10741
53 Ga0105240_10039908 3300009093 Bacteria 6008
54 Ga0105240_10135316 3300009093 Bacteria 2952
55 Ga0105241_10004762 3300009174 Bacteria 9995
56 Ga0105241_10021843 3300009174 Bacteria 4736
57 Ga0105237_10014352 3300009545 Bacteria 8289
58 Ga0105238_10002422 3300009551 Bacteria 18713
59 Ga0105238_10006062 3300009551 Bacteria 11993
60 Ga0105249_10001655 3300009553 Bacteria 19524
61 Ga0105239_10000083 3300010375 Bacteria 132046
62 Ga0105239_10000640 3300010375 Bacteria 49772
63 Ga0105239_10057723 3300010375 Bacteria 4258
64 Ga0105239_10104466 3300010375 Bacteria 3136
65 Ga0105239_10111679 3300010375 Unclassified 3030
66 Ga0105246_10009960 3300011119 Bacteria 5864
67 Ga0157373_10000105 3300013100 Bacteria 65415
68 Ga0157373_10031747 3300013100 Bacteria 3801
69 Ga0157373_10077517 3300013100 Bacteria 2345
70 Ga0157371_10000510 3300013102 Bacteria 46799
71 Ga0157371_10002554 3300013102 Bacteria 17275
72 Ga0157371_10004436 3300013102 Bacteria 12248
73 Ga0157371_10018845 3300013102 Bacteria 5098
74 Ga0157370_10000263 3300013104 Bacteria 66700
75 Ga0157370_10003105 3300013104 Bacteria 19666
76 Ga0157369_10000039 3300013105 Bacteria 188947
77 Ga0157374_10000003 3300013296 Bacteria 854471
78 Ga0157374_10005504 3300013296 Bacteria 10638
79 Ga0163162_10000008 3300013306 Bacteria 316194
80 Ga0163162_10001097 3300013306 Bacteria 25109
81 Ga0163162_10001371 3300013306 Bacteria 22637
82 Ga0157372_10000001 3300013307 Bacteria 791349
83 Ga0157372_10000896 3300013307 Bacteria 32329
84 Ga0157372_10001557 3300013307 Bacteria 24967
85 Ga0157372_10036443 3300013307 Bacteria 5421
86 Ga0157375_10021447 3300013308 Bacteria 5924
87 Ga0157375_10059892 3300013308 Bacteria 3774
88 Ga0182008_10000009 3300014497 Bacteria 331416
89 Ga0207426_1000052 3300025302 Bacteria 389825
90 Ga0207647_10001675 3300025904 Bacteria 17061
91 Ga0207645_10000099 3300025907 Bacteria 64087
92 Ga0207645_10003882 3300025907 Bacteria 11175
93 Ga0207705_10000053 3300025909 Bacteria 162124
94 Ga0207695_10000043 3300025913 Bacteria 444585
95 Ga0207695_10000165 3300025913 Bacteria 195908
96 Ga0207695_10007954 3300025913 Bacteria 13375
97 Ga0207695_10014999 3300025913 Bacteria 9142
98 Ga0207695_10035039 3300025913 Bacteria 5448
99 Ga0207671_10002330 3300025914 Bacteria 20492
100 Ga0207657_10026607 3300025919 Bacteria 5310
101 Ga0207657_10078746 3300025919 Bacteria 2774
102 Ga0207652_10009181 3300025921 Bacteria 7958
103 Ga0207706_10000138 3300025933 Bacteria 79643
104 Ga0207704_10000015 3300025938 Bacteria 163572
105 Ga0207691_10006843 3300025940 Bacteria 11002
106 Ga0207689_10018446 3300025942 Bacteria 5889
107 Ga0207667_10011040 3300025949 Bacteria 10523
108 Ga0207667_10044820 3300025949 Bacteria 4686
109 Ga0207651_10007685 3300025960 Bacteria 5758
110 Ga0207712_10013972 3300025961 Bacteria 5153
111 Ga0207639_10016233 3300026041 Bacteria 5263
112 Ga0207678_10015340 3300026067 Bacteria 6739
113 Ga0207648_10000888 3300026089 Bacteria 33713
114 Ga0207648_10002861 3300026089 Bacteria 18263
115 Ga0207648_10003712 3300026089 Bacteria 15982
116 Ga0207674_10002149 3300026116 Bacteria 24925
117 Ga0207674_10020509 3300026116 Bacteria 7139
118 Ga0207674_10042104 3300026116 Bacteria 4720
119 Ga0207683_10001922 3300026121 Bacteria 18390
120 Ga0207698_10002805 3300026142 Bacteria 10410
121 Ga0207698_10005915 3300026142 Bacteria 7602
122 Ga0268266_10000098 3300028379 Bacteria 182784
123 Ga0268264_10003096 3300028381 Bacteria 14395
124 Ga0268264_10014543 3300028381 Bacteria 6465
125 Ga0307517_10000914 3300028786 Bacteria 50058
126 Ga0307517_10001604 3300028786 Bacteria 37610
127 Ga0307515_10000157 3300028794 Bacteria 165733
128 Ga0307509_10060022 3300031507 Bacteria 4022
129 Ga0307508_10003066 3300031616 Bacteria 17185
130 Ga0307412_10000004 3300031911 Bacteria 544053
131 Ga0307414_10004244 3300032004 Bacteria 7767
132 Ga0307510_10004763 3300033180 Bacteria 16053
133 Ga0395899_0000636 3300037312 Bacteria 36237
134 Ga0395899_0001891 3300037312 Bacteria 17277
135 Ga0395900_0001838 3300037418 Bacteria 24186
136 Ga0395900_0004493 3300037418 Bacteria 14767
137 Ga0395900_0026298 3300037418 Bacteria 5959
138 Ga0395898_0038850 3300037466 Bacteria 4714
139 Ga0395898_0089925 3300037466 Bacteria 2954
140 Ga0395905_0001634 3300037471 Bacteria 26593
141 Ga0395905_0006246 3300037471 Bacteria 12028
142 Ga0395901_0001041 3300038443 Bacteria 29939
143 Ga0395901_0019492 3300038443 Bacteria 6935
144 Ga0436361_0995481 3300039447 Bacteria 23100
145 Ga0453684_0018418 3300044712 Bacteria 10717
146 Ga0451576_0013417 3300045051 Bacteria 9168
147 Ga0495580_0059466 3300046472 Bacteria 2686
148 Ga0495631_0001962 3300046518 Bacteria 12054
149 Ga0495621_0009510 3300046539 Bacteria 2954
150 Ga0495672_0009306 3300047320 Bacteria 7134
151 Ga0495687_000233 3300047443 Bacteria 77056
152 Ga0495686_0000039 3300047472 Bacteria 304821
153 Ga0495686_0011200 3300047472 Bacteria 6328
154 Ga0501037_0061383 3300049573 Bacteria 2741
155 Ga0500651_0009624 3300053093 Bacteria 5756
156 Ga0500611_000095 3300053727 Bacteria 25265

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037466 Ga0395898_0089925 Ga0395898_0089925_298_2106 586
2 3300013307 Ga0157372_10036443 Ga0157372_100364436 635
3 3300053727 Ga0500611_000095 Ga0500611_000095_3968_5938 645
4 3300009551 Ga0105238_10006062 Ga0105238_1000606212 649
5 3300013307 Ga0157372_10001557 Ga0157372_100015572 649
6 3300047472 Ga0495686_0011200 Ga0495686_0011200_3518_5683 678
7 3300005455 Ga0070663_100004151 Ga0070663_1000041514 686
8 3300026067 Ga0207678_10015340 Ga0207678_100153403 686
9 3300028786 Ga0307517_10001604 Ga0307517_100016044 688
10 3300013306 Ga0163162_10001371 Ga0163162_1000137115 689
11 3300009545 Ga0105237_10014352 Ga0105237_100143521 691
12 3300010375 Ga0105239_10000083 Ga0105239_1000008319 691
13 3300013102 Ga0157371_10002554 Ga0157371_100025547 691
14 3300013105 Ga0157369_10000039 Ga0157369_1000003960 691
15 3300013307 Ga0157372_10000001 Ga0157372_10000001303 691
16 3300037312 Ga0395899_0000636 Ga0395899_0000636_145_2310 691
17 iso_pu_bacteria 2896085136 2896088783 692
18 3300005530 Ga0070679_100057346 Ga0070679_1000573461 693
19 3300025919 Ga0207657_10026607 Ga0207657_100266075 693
20 3300005563 Ga0068855_100036755 Ga0068855_1000367552 695
21 3300013296 Ga0157374_10000003 Ga0157374_10000003500 695
22 3300025949 Ga0207667_10044820 Ga0207667_100448202 695
23 3300037418 Ga0395900_0004493 Ga0395900_0004493_8460_10616 696
24 3300037471 Ga0395905_0001634 Ga0395905_0001634_19424_21580 696
25 3300038443 Ga0395901_0001041 Ga0395901_0001041_27555_29711 696
26 3300009093 Ga0105240_10135316 Ga0105240_101353162 698
27 3300005327 Ga0070658_10000027 Ga0070658_1000002782 699
28 3300025909 Ga0207705_10000053 Ga0207705_1000005382 699
29 3300013100 Ga0157373_10077517 Ga0157373_100775171 700
30 3300028786 Ga0307517_10000914 Ga0307517_1000091417 700
31 3300005563 Ga0068855_100029160 Ga0068855_1000291602 701
32 3300005577 Ga0068857_100049756 Ga0068857_1000497563 701
33 3300005616 Ga0068852_100000186 Ga0068852_10000018636 701
34 3300013104 Ga0157370_10000263 Ga0157370_1000026349 701
35 3300025949 Ga0207667_10011040 Ga0207667_1001104010 701
36 3300026116 Ga0207674_10002149 Ga0207674_100021492 701
37 3300026142 Ga0207698_10002805 Ga0207698_1000280510 701
38 iso_pu_bacteria 2896109856 2896114122 701
39 3300005328 Ga0070676_10000794 Ga0070676_1000079412 702
40 3300005364 Ga0070673_100011968 Ga0070673_1000119682 703
41 3300005616 Ga0068852_100000732 Ga0068852_1000007323 703
42 3300005843 Ga0068860_100009410 Ga0068860_1000094103 703
43 3300006237 Ga0097621_100000917 Ga0097621_1000009172 703
44 3300006358 Ga0068871_100001037 Ga0068871_1000010372 703
45 3300006881 Ga0068865_100000129 Ga0068865_10000012919 703
46 3300009093 Ga0105240_10003959 Ga0105240_1000395918 703
47 3300009093 Ga0105240_10014544 Ga0105240_100145448 703
48 3300009093 Ga0105240_10039908 Ga0105240_100399082 703
49 3300009174 Ga0105241_10021843 Ga0105241_100218434 703
50 3300009551 Ga0105238_10002422 Ga0105238_1000242214 703
51 3300010375 Ga0105239_10104466 Ga0105239_101044661 703
52 3300013296 Ga0157374_10005504 Ga0157374_100055045 703
53 3300025907 Ga0207645_10000099 Ga0207645_1000009924 703
54 3300025913 Ga0207695_10014999 Ga0207695_100149997 703
55 3300025913 Ga0207695_10035039 Ga0207695_100350392 703
56 3300025914 Ga0207671_10002330 Ga0207671_100023304 703
57 3300025938 Ga0207704_10000015 Ga0207704_1000001550 703
58 3300025960 Ga0207651_10007685 Ga0207651_100076853 703
59 3300026089 Ga0207648_10000888 Ga0207648_100008887 703
60 3300026116 Ga0207674_10042104 Ga0207674_100421043 703
61 3300026142 Ga0207698_10005915 Ga0207698_100059154 703
62 3300028381 Ga0268264_10003096 Ga0268264_100030967 703
63 3300037312 Ga0395899_0001891 Ga0395899_0001891_14127_16298 703
64 3300037418 Ga0395900_0026298 Ga0395900_0026298_213_2384 703
65 3300037466 Ga0395898_0038850 Ga0395898_0038850_2125_4296 703
66 3300037471 Ga0395905_0006246 Ga0395905_0006246_6491_8662 703
67 3300046518 Ga0495631_0001962 Ga0495631_0001962_7225_9393 703
68 3300005289 Ga0065704_10078326 Ga0065704_100783262 704
69 3300033180 Ga0307510_10004763 Ga0307510_100047636 704
70 3300003320 rootH2_10040443 rootH2_1004044312 705
71 3300003354 JGI25160J50197_1001046 JGI25160J50197_10010462 705
72 3300005548 Ga0070665_100000178 Ga0070665_10000017820 705
73 3300009093 Ga0105240_10004547 Ga0105240_100045472 705
74 3300010375 Ga0105239_10057723 Ga0105239_100577232 705
75 3300013306 Ga0163162_10000008 Ga0163162_10000008192 705
76 3300013308 Ga0157375_10021447 Ga0157375_100214476 705
77 3300025302 Ga0207426_1000052 Ga0207426_1000052173 705
78 3300025913 Ga0207695_10007954 Ga0207695_100079542 705
79 3300028379 Ga0268266_10000098 Ga0268266_1000009866 705
80 3300039447 Ga0436361_0995481 Ga0436361_0995481_16396_18564 705
81 3300047443 Ga0495687_000233 Ga0495687_000233_28672_30840 705
82 3300049573 Ga0501037_0061383 Ga0501037_0061383_530_2677 705
83 3300003320 rootH2_10004606 rootH2_1000460646 706
84 3300003320 rootH2_10003167 rootH2_1000316719 707
85 3300013307 Ga0157372_10000896 Ga0157372_100008967 707
86 3300013308 Ga0157375_10059892 Ga0157375_100598924 707
87 3300046539 Ga0495621_0009510 Ga0495621_0009510_766_2913 707
88 3300005539 Ga0068853_100000502 Ga0068853_10000050214 708
89 3300009093 Ga0105240_10000095 Ga0105240_1000009554 708
90 3300009093 Ga0105240_10000155 Ga0105240_1000015550 708
91 3300010375 Ga0105239_10000640 Ga0105239_1000064020 708
92 3300025913 Ga0207695_10000043 Ga0207695_1000004366 708
93 3300025913 Ga0207695_10000165 Ga0207695_1000016570 708
94 3300026041 Ga0207639_10016233 Ga0207639_100162334 708
95 3300028381 Ga0268264_10014543 Ga0268264_100145432 708
96 3300031507 Ga0307509_10060022 Ga0307509_100600222 708
97 3300005459 Ga0068867_100007858 Ga0068867_1000078581 709
98 3300005617 Ga0068859_100001033 Ga0068859_10000103314 709
99 3300006931 Ga0097620_100001033 Ga0097620_10000103312 709
100 3300005336 Ga0070680_100048404 Ga0070680_1000484042 710
101 3300005366 Ga0070659_100081844 Ga0070659_1000818442 710
102 3300009553 Ga0105249_10001655 Ga0105249_100016552 710
103 3300013102 Ga0157371_10018845 Ga0157371_100188453 710
104 3300025921 Ga0207652_10009181 Ga0207652_100091813 710
105 3300025961 Ga0207712_10013972 Ga0207712_100139724 710
106 3300026116 Ga0207674_10020509 Ga0207674_100205094 710
107 3300046472 Ga0495580_0059466 Ga0495580_0059466_49_2205 710
108 iso_pu_bacteria 2852623160 2852623909 710
109 iso_pu_bacteria 2884933994 2884937188 710
110 3300006846 Ga0075430_100006583 Ga0075430_1000065834 711
111 3300013102 Ga0157371_10004436 Ga0157371_100044367 711
112 3300038443 Ga0395901_0019492 Ga0395901_0019492_159_2354 711
113 3300047472 Ga0495686_0000039 Ga0495686_0000039_144116_146335 711
114 3300003316 rootH1_10072367 rootH1_100723676 712
115 3300005471 Ga0070698_100000842 Ga0070698_10000084220 712
116 3300005471 Ga0070698_100009065 Ga0070698_1000090654 712
117 3300005471 Ga0070698_100021251 Ga0070698_1000212518 712
118 3300006846 Ga0075430_100030197 Ga0075430_1000301972 712
119 3300006880 Ga0075429_100022687 Ga0075429_1000226874 712
120 3300037418 Ga0395900_0001838 Ga0395900_0001838_20209_22371 712
121 3300005459 Ga0068867_100016557 Ga0068867_1000165573 713
122 3300005843 Ga0068860_100012030 Ga0068860_1000120302 713
123 3300010375 Ga0105239_10111679 Ga0105239_101116791 713
124 3300013306 Ga0163162_10001097 Ga0163162_1000109711 713
125 3300026089 Ga0207648_10002861 Ga0207648_100028618 713
126 3300005339 Ga0070660_100069751 Ga0070660_1000697512 714
127 3300005457 Ga0070662_100000281 Ga0070662_10000028120 714
128 3300009174 Ga0105241_10004762 Ga0105241_100047622 714
129 3300013100 Ga0157373_10031747 Ga0157373_100317472 714
130 3300025904 Ga0207647_10001675 Ga0207647_100016758 714
131 3300025919 Ga0207657_10078746 Ga0207657_100787462 714
132 3300025933 Ga0207706_10000138 Ga0207706_1000013827 714
133 iso_pu_bacteria 2884791551 2884794323 714
134 3300005364 Ga0070673_100027411 Ga0070673_1000274112 715
135 3300005543 Ga0070672_100028861 Ga0070672_1000288613 715
136 3300005840 Ga0068870_10009545 Ga0068870_100095452 715
137 3300006237 Ga0097621_100053142 Ga0097621_1000531422 715
138 3300011119 Ga0105246_10009960 Ga0105246_100099603 715
139 3300025907 Ga0207645_10003882 Ga0207645_100038823 715
140 3300025940 Ga0207691_10006843 Ga0207691_100068439 715
141 3300025942 Ga0207689_10018446 Ga0207689_100184463 715
142 3300026089 Ga0207648_10003712 Ga0207648_100037129 715
143 3300026121 Ga0207683_10001922 Ga0207683_100019222 715
144 3300028794 Ga0307515_10000157 Ga0307515_1000015743 715
145 3300031616 Ga0307508_10003066 Ga0307508_100030663 715
146 3300005289 Ga0065704_10074516 Ga0065704_100745163 716
147 3300044712 Ga0453684_0018418 Ga0453684_0018418_8530_10692 716
148 3300045051 Ga0451576_0013417 Ga0451576_0013417_2024_4186 716
149 3300047320 Ga0495672_0009306 Ga0495672_0009306_2402_4576 716
150 iso_pu_bacteria 2738541284 2738762881 733
151 iso_pu_bacteria 2775506987 2776614048 735
152 2162886007 SwRhRL2b_contig_341942 SwRhRL2b_0580.00001800 737
153 3300005288 Ga0065714_10002431 Ga0065714_1000243112 737
154 3300005288 Ga0065714_10002537 Ga0065714_100025375 737
155 3300005289 Ga0065704_10000254 Ga0065704_1000025426 737
156 3300013100 Ga0157373_10000105 Ga0157373_1000010554 737
157 3300013102 Ga0157371_10000510 Ga0157371_1000051029 737
158 3300013104 Ga0157370_10003105 Ga0157370_100031054 737
159 3300014497 Ga0182008_10000009 Ga0182008_1000000977 737
160 3300031911 Ga0307412_10000004 Ga0307412_10000004465 737
161 3300032004 Ga0307414_10004244 Ga0307414_100042447 737
162 3300053093 Ga0500651_0009624 Ga0500651_0009624_1727_3940 737

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01011

PQQ

PQQ enzyme repeat

332

362

0.92

PF13442

Cytochrome_CBB3

Cytochrome C oxidase, cbb3-type, subunit III

514

585

0.87

PF13360

PQQ_2

PQQ-like domain

631

738

0.82

PF00034

Cytochrom_C

Cytochrome c

516

589

0.69

Structural Annotation

Top 5 Hits

ID Description Score Start End
1c75-assembly1.cif.gz_A "0.97 a ""ab initio"" crystal structure of cytochrome c-553 from bacillus pasteurii" 0.855 507 575
1c75-assembly1.cif.gz_A "0.97 a ""ab initio"" crystal structure of cytochrome c-553 from bacillus pasteurii" 0.8026 507 575
1kb0-assembly1.cif.gz_A crystal structure of quinohemoprotein alcohol dehydrogenase from comamonas testosteroni 0.791 42 736
1kv9-assembly1.cif.gz_A structure at 1.9 a resolution of a quinohemoprotein alcohol dehydrogenase from pseudomonas putida hk5 0.7894 47 737
2zbo-assembly1.cif.gz_A crystal structure of low-redox-potential cytochrom c6 from brown alga hizikia fusiformis at 1.6 a resolution 0.7794 504 575
ID Description Score Start End Superfamily
1hzuA01 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.8821 503 574 1.10.760.10
1h9yB01 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.8582 503 574 1.10.760.10
af_P15877_153_794_2.140.10.10 Mainly Beta;8 Propeller;Methanol Dehydrogenase; Chain A;Quinoprotein alcohol dehydrogenase-like superfamily 0.8375 35 737 2.140.10.10
af_P15877_153_794_2.140.10.10 Mainly Beta;8 Propeller;Methanol Dehydrogenase; Chain A;Quinoprotein alcohol dehydrogenase-like superfamily 0.8325 35 737 2.140.10.10
af_Q9VLL0_923_1012_2.40.10.480 Mainly Beta;Beta Barrel;Thrombin, subunit H; 0.8264 669 719 2.40.10.480
ID Description Score Start End GO Terms
AF-A0A4Q5TTR5-F1-model_v4 Pyrroloquinoline quinone-dependent dehydrogenase 0.9771 613 737
AF-A0A522DWN8-F1-model_v4 C-type cytochrome 0.9658 411 737 GO:0009055
GO:0020037
GO:0046872
AF-A0A5C7Z3R5-F1-model_v4 PQQ-binding-like beta-propeller repeat protein 0.9652 270 737 GO:0009055
GO:0016491
GO:0020037
GO:0046872
AF-A0A4Q5TTR5-F1-model_v4 Pyrroloquinoline quinone-dependent dehydrogenase 0.962 613 737
AF-A0A2V9KVA4-F1-model_v4 Pyrroloquinoline quinone-dependent dehydrogenase 0.9601 69 737 GO:0008876
GO:0016020
GO:0048038

Feature Viewer

pLDDT pTM Quality
83.95 0.85 High
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Predicted Structure (AlphaFold2)

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