F239086

General Info

Members Datasets Scaffolds Average Seq Length
162 121 324 521

Family's Representative Sequence

Representative Sequence 3300007265|Ga0099794_10051055|Ga0099794_100510551
Length 577
Sequence MGKVSEPDRVENEPGSDGAQNGTQRTGNSSDSFAQAEHSWRQRLGKKPPASAYTSSGLELDAVYTPTSIGHLDPLDDIGLPGDFPFTRGVQPTMYRGRLWTMRQYSGFGTPKESNSRYKWLLEQGQTGISVALDLPTQLGLDSDDPAAVDDVGRVGVAIDTLADMETLFDGIPLDRISTSFTINATAAILLAMYLVVAERQGVPAARISGTIQNDILKEYVARGTWIFPPEPSLRLIVDTIEHCIHHAPRFNAISVAGAHFRDAGATAVQELAYTLADGLTYAQRCIDRGLKIDEFAPLISFYFYTHNDLFEEAAKYRAGRRLWARLMKDRFGARDPRSMMFRFGVVCGGSTLTAQQPQNNIVRVAYQALASVLGGVQSVFTAAWDEAFAIPTDQTAELALRTQQVLAYETGVANVADPLGGSYYVEALTDRIEREALAIIDRIERAGGMVPCIQNGLIQKEIAREAYRHQQRVEAGDRVVVGVNKFSREEPELRQLELYETDASLAVRQREDVARVKSARDHAQVARVLAAIRDAARGSQSLMPPIIEAVKAYASLGEICGVLREEFGTFREPTGL

Samples

Sample ID Description Type Environment
1 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
4 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
7 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
19 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
22 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
25 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
26 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
27 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
28 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
29 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
34 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
35 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
36 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
49 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
50 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
51 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
52 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
53 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
54 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
55 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
56 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
57 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
58 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
59 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
60 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
61 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
62 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
63 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
64 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
65 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
66 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
67 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
68 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
69 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
70 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
71 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
72 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
73 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
74 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
75 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
76 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
77 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
78 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
79 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
80 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
81 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
82 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
83 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
84 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
85 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
86 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
95 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
96 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
97 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
98 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
99 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
100 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
101 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
102 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
103 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
104 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
105 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
106 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
107 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
108 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
109 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
110 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
111 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
112 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
113 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
114 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
115 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
116 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
117 2675902999 Frankia asymbiotica NRRL B-16386 Isolate Nodule
118 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
119 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
120 2902582711 Micromonospora sp. AP08 Isolate Unclassified
121 8057568493 Actinorhabdospora filicis NBRC 111898 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.44
Metatranscriptomes 1.85
Isolates 3.7

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.62
Nodule 1.23
Rhizoplane 4.94
Rhizosphere 90.12
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0099794_10051055 3300007265 Bacteria 1990
2 Ga0070658_10076762 3300005327 Bacteria 2740
3 Ga0070675_100006511 3300005354 Bacteria 8972
4 Ga0070667_100000987 3300005367 Bacteria 26141
5 Ga0070714_100109136 3300005435 Bacteria 2448
6 Ga0070713_100110340 3300005436 Bacteria 2398
7 Ga0070710_10008289 3300005437 Bacteria 5059
8 Ga0070711_100018302 3300005439 Bacteria 4469
9 Ga0070705_100002558 3300005440 Bacteria 9143
10 Ga0070708_100006665 3300005445 Bacteria 9195
11 Ga0070681_10063908 3300005458 Bacteria 3653
12 Ga0070706_100000775 3300005467 Bacteria 35716
13 Ga0070706_100017063 3300005467 Bacteria 6707
14 Ga0070707_100062714 3300005468 Bacteria 3566
15 Ga0070698_100013271 3300005471 Bacteria 8719
16 Ga0070699_100000551 3300005518 Bacteria 35367
17 Ga0070699_100084088 3300005518 Bacteria 2776
18 Ga0070697_100046880 3300005536 Bacteria 3504
19 Ga0070697_100166091 3300005536 Bacteria 1866
20 Ga0070665_100012193 3300005548 Bacteria 8668
21 Ga0070704_100052483 3300005549 Bacteria 2877
22 Ga0068863_100013565 3300005841 Bacteria 7861
23 Ga0068860_100010702 3300005843 Bacteria 9061
24 Ga0068860_100056837 3300005843 Bacteria 3719
25 Ga0068862_100004005 3300005844 Bacteria 12492
26 Ga0081455_10070745 3300005937 Bacteria 2895
27 Ga0070717_10059624 3300006028 Bacteria 3158
28 Ga0070715_10018441 3300006163 Bacteria 2659
29 Ga0075428_100000588 3300006844 Bacteria 37105
30 Ga0075428_100106279 3300006844 Bacteria 3060
31 Ga0075430_100002008 3300006846 Bacteria 16760
32 Ga0075430_100021664 3300006846 Bacteria 5462
33 Ga0075430_100176270 3300006846 Bacteria 1778
34 Ga0075431_100002681 3300006847 Bacteria 17246
35 Ga0075431_100073709 3300006847 Bacteria 3522
36 Ga0075431_100158145 3300006847 Bacteria 2331
37 Ga0075429_100025073 3300006880 Bacteria 5177
38 Ga0075429_100048372 3300006880 Bacteria 3698
39 Ga0075429_100049750 3300006880 Bacteria 3645
40 Ga0114129_10001052 3300009147 Bacteria 36161
41 Ga0114129_10063323 3300009147 Bacteria 5165
42 Ga0114129_10074528 3300009147 Bacteria 4728
43 Ga0105237_10113400 3300009545 Bacteria 2703
44 Ga0105249_10041434 3300009553 Bacteria 4186
45 Ga0105249_10104719 3300009553 Bacteria 2666
46 Ga0163163_10006014 3300014325 Bacteria 10559
47 Ga0163163_10208370 3300014325 Bacteria 2003
48 Ga0197907_10041152 3300020069 Bacteria 3730
49 Ga0206350_10864009 3300020080 Bacteria 3182
50 Ga0224712_10007999 3300022467 Bacteria 3105
51 Ga0207705_10064693 3300025909 Bacteria 2643
52 Ga0207684_10000010 3300025910 Bacteria 552805
53 Ga0207684_10039042 3300025910 Bacteria 4028
54 Ga0207693_10000666 3300025915 Bacteria 30910
55 Ga0207663_10009870 3300025916 Bacteria 5054
56 Ga0207657_10062387 3300025919 Bacteria 3191
57 Ga0207646_10000367 3300025922 Bacteria 60142
58 Ga0207646_10017985 3300025922 Bacteria 6601
59 Ga0207700_10010335 3300025928 Bacteria 5883
60 Ga0207712_10005022 3300025961 Bacteria 8370
61 Ga0207712_10070660 3300025961 Bacteria 2508
62 Ga0207658_10004315 3300025986 Bacteria 9898
63 Ga0207641_10045540 3300026088 Bacteria 3694
64 Ga0268265_10004422 3300028380 Bacteria 9763
65 Ga0268264_10010158 3300028381 Bacteria 7792
66 Ga0268264_10043380 3300028381 Bacteria 3727
67 Ga0265318_10026956 3300028577 Bacteria 2261
68 Ga0307515_10117473 3300028794 Bacteria 3044
69 Ga0316577_10000018 3300031733 Bacteria 36008
70 Ga0316577_10001341 3300031733 Bacteria 11544
71 Ga0316577_10003347 3300031733 Bacteria 8085
72 Ga0373947_0069644 3300035725 Bacteria 2154
73 Ga0373937_0114940 3300036401 Bacteria 2505
74 Ga0316582_0092358 3300036647 Bacteria 1994
75 Ga0316584_0007058 3300036712 Bacteria 7649
76 Ga0316584_0028799 3300036712 Bacteria 4099
77 Ga0373925_0015924 3300037068 Bacteria 5442
78 Ga0395900_0058287 3300037418 Bacteria 3975
79 Ga0395898_0011020 3300037466 Bacteria 9420
80 Ga0395905_0053712 3300037471 Bacteria 3770
81 Ga0395901_0011103 3300038443 Bacteria 9127
82 Ga0395901_0131115 3300038443 Bacteria 2634
83 Ga0453684_0059599 3300044712 Bacteria 4919
84 Ga0495651_0024243 3300046462 Bacteria 4721
85 Ga0495653_0013457 3300046463 Bacteria 6666
86 Ga0495594_0010429 3300046499 Bacteria 4819
87 Ga0495608_0000826 3300046511 Bacteria 21614
88 Ga0495640_0015456 3300046533 Bacteria 5744
89 Ga0495586_0002385 3300046535 Bacteria 10199
90 Ga0495667_0021339 3300046559 Bacteria 4370
91 Ga0495635_0010793 3300046663 Bacteria 6400
92 Ga0495657_0005330 3300046675 Bacteria 10172
93 Ga0495599_0023975 3300046678 Bacteria 3816
94 Ga0495646_0011738 3300046680 Bacteria 5571
95 Ga0495613_0056704 3300046689 Bacteria 2877
96 Ga0495604_0001385 3300047317 Bacteria 19854
97 Ga0495674_0028475 3300047319 Bacteria 5092
98 Ga0495680_0018493 3300047322 Bacteria 5912
99 Ga0495675_0040473 3300047444 Bacteria 2970
100 Ga0495602_0012075 3300048088 Bacteria 8902
101 Ga0496102_0003104 3300048905 Bacteria 14085
102 Ga0496104_0002454 3300048907 Bacteria 15970
103 Ga0496109_0071113 3300048912 Bacteria 3194
104 Ga0496110_0009809 3300048913 Bacteria 7756
105 Ga0496112_0004333 3300048915 Bacteria 11998
106 Ga0496112_0009993 3300048915 Bacteria 8588
107 Ga0496112_0052827 3300048915 Bacteria 3989
108 Ga0496113_0003028 3300048916 Bacteria 9959
109 Ga0496117_0001075 3300048920 Bacteria 41379
110 Ga0496118_0007893 3300048921 Bacteria 11151
111 Ga0501031_0038744 3300049568 Bacteria 3110
112 Ga0501031_0071578 3300049568 Bacteria 2258
113 Ga0501032_0008147 3300049569 Bacteria 7643
114 Ga0501033_0030540 3300049570 Bacteria 4049
115 Ga0501033_0085853 3300049570 Bacteria 2305
116 Ga0501036_0002884 3300049572 Bacteria 13631
117 Ga0501036_0039877 3300049572 Bacteria 3973
118 Ga0501038_0012162 3300049574 Bacteria 7856
119 Ga0501041_0006311 3300049577 Bacteria 6939
120 Ga0501042_0056312 3300049578 Bacteria 2806
121 Ga0501048_0016816 3300049582 Bacteria 5391
122 Ga0501048_0213755 3300049582 Bacteria 1367
123 Ga0501067_0010125 3300049583 Bacteria 5216
124 Ga0501068_0060571 3300049584 Bacteria 2299
125 Ga0501069_0052230 3300049585 Bacteria 2276
126 Ga0501070_0002135 3300049586 Bacteria 17358
127 Ga0501070_0005943 3300049586 Bacteria 10403
128 Ga0501073_0032664 3300049589 Bacteria 3710
129 Ga0501073_0107213 3300049589 Bacteria 1938
130 Ga0501074_0018426 3300049590 Bacteria 5071
131 Ga0501074_0030531 3300049590 Bacteria 3905
132 Ga0501074_0043735 3300049590 Bacteria 3242
133 Ga0501075_0001792 3300049591 Bacteria 14131
134 Ga0501076_0011937 3300049592 Bacteria 6488
135 Ga0501077_0052415 3300049593 Bacteria 2591
136 Ga0501079_0077301 3300049741 Bacteria 2575
137 Ga0501079_0173529 3300049741 Bacteria 1681
138 Ga0501080_0000532 3300049742 Bacteria 29975
139 Ga0501080_0002162 3300049742 Bacteria 17080
140 Ga0501081_0009552 3300049743 Bacteria 6325
141 Ga0501083_0001172 3300049744 Bacteria 17666
142 nmdc:mga05p37_19513_c1 3300050507 Bacteria 8201
143 nmdc:mga05p37_335721_c1 3300050507 Bacteria 1784
144 nmdc:mga05p37_5843_c1 3300050507 Bacteria 14472
145 nmdc:mga09592_64_c2 3300050508 Bacteria 55104
146 nmdc:mga0qj67_3071_c1 3300050509 Bacteria 11991
147 nmdc:mga0qj67_57592_c1 3300050509 Bacteria 3080
148 nmdc:mga0qj67_93_c2 3300050509 Bacteria 55104
149 nmdc:mga06r32_108409_c1 3300050510 Bacteria 2730
150 nmdc:mga06r32_2684_c1 3300050510 Bacteria 15920
151 nmdc:mga06r32_32074_c1 3300050510 Bacteria 4939
152 nmdc:mga08x19_134365_c1 3300050514 Bacteria 1667
153 nmdc:mga0a205_75260_c1 3300050515 Bacteria 3262
154 Ga0500616_0007496 3300053153 Bacteria 6920
155 Ga0501084_0015202 3300054114 Bacteria 6382
156 Ga0501082_0076843 3300060353 Bacteria 2878
157 2623590486 2622736626 Bacteria 7181580
158 2676205880 2675902999 Bacteria 9438463
159 2774850455 2773857921 Bacteria 9435764
160 2861523284 2861520306 Bacteria 8348283
161 2902585215 2902582711 Bacteria 6187705
162 8057574665 8057568493 Bacteria 7221719
163 Ga0099794_10051055
164 Ga0070658_10076762
165 Ga0070675_100006511
166 Ga0070667_100000987
167 Ga0070714_100109136
168 Ga0070713_100110340
169 Ga0070710_10008289
170 Ga0070711_100018302
171 Ga0070705_100002558
172 Ga0070708_100006665
173 Ga0070681_10063908
174 Ga0070706_100000775
175 Ga0070706_100017063
176 Ga0070707_100062714
177 Ga0070698_100013271
178 Ga0070699_100000551
179 Ga0070699_100084088
180 Ga0070697_100046880
181 Ga0070697_100166091
182 Ga0070665_100012193
183 Ga0070704_100052483
184 Ga0068863_100013565
185 Ga0068860_100010702
186 Ga0068860_100056837
187 Ga0068862_100004005
188 Ga0081455_10070745
189 Ga0070717_10059624
190 Ga0070715_10018441
191 Ga0075428_100000588
192 Ga0075428_100106279
193 Ga0075430_100002008
194 Ga0075430_100021664
195 Ga0075430_100176270
196 Ga0075431_100002681
197 Ga0075431_100073709
198 Ga0075431_100158145
199 Ga0075429_100025073
200 Ga0075429_100048372
201 Ga0075429_100049750
202 Ga0114129_10001052
203 Ga0114129_10063323
204 Ga0114129_10074528
205 Ga0105237_10113400
206 Ga0105249_10041434
207 Ga0105249_10104719
208 Ga0163163_10006014
209 Ga0163163_10208370
210 Ga0197907_10041152
211 Ga0206350_10864009
212 Ga0224712_10007999
213 Ga0207705_10064693
214 Ga0207684_10000010
215 Ga0207684_10039042
216 Ga0207693_10000666
217 Ga0207663_10009870
218 Ga0207657_10062387
219 Ga0207646_10000367
220 Ga0207646_10017985
221 Ga0207700_10010335
222 Ga0207712_10005022
223 Ga0207712_10070660
224 Ga0207658_10004315
225 Ga0207641_10045540
226 Ga0268265_10004422
227 Ga0268264_10010158
228 Ga0268264_10043380
229 Ga0265318_10026956
230 Ga0307515_10117473
231 Ga0316577_10000018
232 Ga0316577_10001341
233 Ga0316577_10003347
234 Ga0373947_0069644
235 Ga0373937_0114940
236 Ga0316582_0092358
237 Ga0316584_0007058
238 Ga0316584_0028799
239 Ga0373925_0015924
240 Ga0395900_0058287
241 Ga0395898_0011020
242 Ga0395905_0053712
243 Ga0395901_0011103
244 Ga0395901_0131115
245 Ga0453684_0059599
246 Ga0495651_0024243
247 Ga0495653_0013457
248 Ga0495594_0010429
249 Ga0495608_0000826
250 Ga0495640_0015456
251 Ga0495586_0002385
252 Ga0495667_0021339
253 Ga0495635_0010793
254 Ga0495657_0005330
255 Ga0495599_0023975
256 Ga0495646_0011738
257 Ga0495613_0056704
258 Ga0495604_0001385
259 Ga0495674_0028475
260 Ga0495680_0018493
261 Ga0495675_0040473
262 Ga0495602_0012075
263 Ga0496102_0003104
264 Ga0496104_0002454
265 Ga0496109_0071113
266 Ga0496110_0009809
267 Ga0496112_0004333
268 Ga0496112_0009993
269 Ga0496112_0052827
270 Ga0496113_0003028
271 Ga0496117_0001075
272 Ga0496118_0007893
273 Ga0501031_0038744
274 Ga0501031_0071578
275 Ga0501032_0008147
276 Ga0501033_0030540
277 Ga0501033_0085853
278 Ga0501036_0002884
279 Ga0501036_0039877
280 Ga0501038_0012162
281 Ga0501041_0006311
282 Ga0501042_0056312
283 Ga0501048_0016816
284 Ga0501048_0213755
285 Ga0501067_0010125
286 Ga0501068_0060571
287 Ga0501069_0052230
288 Ga0501070_0002135
289 Ga0501070_0005943
290 Ga0501073_0032664
291 Ga0501073_0107213
292 Ga0501074_0018426
293 Ga0501074_0030531
294 Ga0501074_0043735
295 Ga0501075_0001792
296 Ga0501076_0011937
297 Ga0501077_0052415
298 Ga0501079_0077301
299 Ga0501079_0173529
300 Ga0501080_0000532
301 Ga0501080_0002162
302 Ga0501081_0009552
303 Ga0501083_0001172
304 nmdc:mga05p37_19513_c1
305 nmdc:mga05p37_335721_c1
306 nmdc:mga05p37_5843_c1
307 nmdc:mga09592_64_c2
308 nmdc:mga0qj67_3071_c1
309 nmdc:mga0qj67_57592_c1
310 nmdc:mga0qj67_93_c2
311 nmdc:mga06r32_108409_c1
312 nmdc:mga06r32_2684_c1
313 nmdc:mga06r32_32074_c1
314 nmdc:mga08x19_134365_c1
315 nmdc:mga0a205_75260_c1
316 Ga0500616_0007496
317 Ga0501084_0015202
318 Ga0501082_0076843
319 2623590486
320 2676205880
321 2774850455
322 2861523284
323 2902585215
324 8057574665

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01642

MM_CoA_mutase

Methylmalonyl-CoA mutase

53

569

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
6oxd-assembly1.cif.gz_A structure of mycobacterium tuberculosis methylmalonyl-coa mutase with adenosyl cobalamin 0.9444 33 545
8gju-assembly2.cif.gz_H crystal structure of human methylmalonyl-coa mutase (mmut) in complex with methylmalonic acidemia type a protein (mmaa), coenzyme a, and gdp 0.9401 33 538
8gju-assembly2.cif.gz_L crystal structure of human methylmalonyl-coa mutase (mmut) in complex with methylmalonic acidemia type a protein (mmaa), coenzyme a, and gdp 0.9326 33 538
4r3u-assembly1.cif.gz_A crystal structure of 2-hydroxyisobutyryl-coa mutase 0.9076 10 539
4r3u-assembly2.cif.gz_B crystal structure of 2-hydroxyisobutyryl-coa mutase 0.9064 10 539
ID Description Score Start End Superfamily
4r3uB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Methylmalonyl-CoA mutase 0.9064 10 539 3.20.20.240
af_A4I2L1_6_566_3.20.20.240 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Methylmalonyl-CoA mutase 0.8898 1 545 3.20.20.240
af_A4I2L1_6_566_3.20.20.240 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Methylmalonyl-CoA mutase 0.8882 1 545 3.20.20.240
4r3uB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Methylmalonyl-CoA mutase 0.8804 10 539 3.20.20.240
1reqB01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Methylmalonyl-CoA mutase 0.8396 39 471 3.20.20.240
ID Description Score Start End GO Terms
AF-A0A662SXF8-F1-model_v4 Methylmalonyl-CoA mutase 0.9808 199 543 GO:0004494
GO:0031419
AF-A0A7W1P9H7-F1-model_v4 Methylmalonyl-CoA mutase 0.9805 196 543 GO:0004494
GO:0031419
AF-A0A2V7TND0-F1-model_v4 Methylmalonyl-CoA mutase 0.9802 48 523 GO:0004494
GO:0031419
AF-A0A2D6LYF7-F1-model_v4 deleted 0.9799 48 541
AF-A0A496YPW6-F1-model_v4 Methylmalonyl-CoA mutase 0.9798 100 543 GO:0004494
GO:0031419

Map