F238908

General Info

Members Datasets Scaffolds Average Seq Length
162 122 151 290

Family's Representative Sequence

Representative Sequence 3300005981|Ga0081538_10003032|Ga0081538_1000303222
Length 330
Sequence MVVVIAVQETADWDGEEVPAERCTGRASHPPDRGAYAAGVDHRQEAREFLVSRRAKVTPAQANLPAGTNRRVPGLRRSEVAALAGVSIEYYSKLERGAAGVLDAIARALQLDDAERAHLFDLAQAADGGSTLVRPRRRAAKPWSPRPSLQWTLDAVTDGPAFLRNGRMDLLAANRLARAFYADVYADPQRPPNLARFTFLDQRARRFYPDWDLLADITVAILRTEAGRDPHDKDLQNLVGELSTRSDEFRTRWGAHNVRHHGSGAKTYHHPIVGELTLAYEGLELAAEPGLTLTIYTAEPGSPSEEALRLLASWASTPDQAPAVPSDFNT

Samples

Sample ID Description Type Environment
1 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
2 2558860280 Kutzneria sp. 744 Isolate Unclassified
3 2643221548 Streptomyces sp. Root55 Isolate Unclassified
4 2643221647 Streptomyces sp. Root369 Isolate Unclassified
5 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
6 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
7 2844849076 Arthrobacter cupressi DSM 24664 Isolate Rhizosphere
8 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
9 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
10 2919034639 Paenarthrobacter nitroguajacolicus 247 Isolate Rhizosphere
11 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
12 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
13 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
14 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
15 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
16 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
17 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
24 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
27 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
31 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
34 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
35 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
36 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
46 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
47 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
48 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
49 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
50 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
51 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
52 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
53 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
54 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
55 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
56 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
57 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
60 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
61 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
62 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
63 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
64 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
65 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
66 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
67 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
68 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
69 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
70 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
71 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
72 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
73 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
74 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
75 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
76 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
77 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
78 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
79 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
80 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
81 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
82 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
83 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
84 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
85 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
86 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
87 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
88 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
89 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
90 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
91 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
92 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
93 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
94 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
95 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
96 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
97 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
98 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
99 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
100 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
101 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
102 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
103 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
104 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
105 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
106 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
107 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
108 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
109 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
110 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
111 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
112 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
113 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
114 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
115 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
116 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
117 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
118 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
119 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
120 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
121 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
122 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.21
Metatranscriptomes 0
Isolates 6.79

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.47
Nodule 0
Rhizoplane 0
Rhizosphere 90.12
Stem 0
Stem Tuber 0
Unclassified 7.41

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1000019 3300002773 Bacteria 108017
2 JGI25406J46586_10001752 3300003203 Bacteria 10203
3 rootH2_10018243 3300003320 Bacteria 2381
4 rootH2_10052650 3300003320 Bacteria 4055
5 Ga0070658_10000442 3300005327 Bacteria 35871
6 Ga0070668_100044815 3300005347 Bacteria 3394
7 Ga0070663_100011234 3300005455 Bacteria 5612
8 Ga0070706_100182231 3300005467 Bacteria 1961
9 Ga0070698_100194180 3300005471 Bacteria 1967
10 Ga0068855_100009727 3300005563 Bacteria 11600
11 Ga0068858_100013962 3300005842 Bacteria 7577
12 Ga0068862_100138616 3300005844 Bacteria 2158
13 Ga0081538_10003032 3300005981 Bacteria 15995
14 Ga0081538_10005933 3300005981 Bacteria 10883
15 Ga0081538_10013476 3300005981 Bacteria 6466
16 Ga0081538_10026782 3300005981 Bacteria 4021
17 Ga0081540_1000232 3300005983 Bacteria 58343
18 Ga0081539_10000137 3300005985 Bacteria 171821
19 Ga0081539_10001666 3300005985 Bacteria 35954
20 Ga0081539_10030831 3300005985 Bacteria 3320
21 Ga0070717_10216351 3300006028 Bacteria 1683
22 Ga0105244_10007927 3300009036 Bacteria 6693
23 Ga0111539_10037412 3300009094 Bacteria 5861
24 Ga0105245_10329275 3300009098 Bacteria 1507
25 Ga0105243_10002075 3300009148 Bacteria 16989
26 Ga0105246_10000119 3300011119 Bacteria 35825
27 Ga0105246_10001238 3300011119 Bacteria 14983
28 Ga0105246_10003655 3300011119 Bacteria 9309
29 Ga0157370_10057402 3300013104 Bacteria 3701
30 Ga0207425_1005889 3300025245 Bacteria 3427
31 Ga0209129_1000046 3300025258 Bacteria 271702
32 Ga0209025_1000543 3300025294 Bacteria 70931
33 Ga0207655_1012090 3300025728 Bacteria 5076
34 Ga0207692_10202053 3300025898 Bacteria 1169
35 Ga0207705_10000001 3300025909 Bacteria 2061880
36 Ga0207684_10043169 3300025910 Bacteria 3822
37 Ga0207644_10225310 3300025931 Bacteria 1488
38 Ga0207667_10006674 3300025949 Bacteria 13953
39 Ga0207703_10233364 3300026035 Bacteria 1650
40 Ga0207678_10081366 3300026067 Bacteria 2772
41 Ga0268264_10323859 3300028381 Bacteria 1458
42 Ga0307515_10287979 3300028794 Bacteria 1342
43 Ga0307513_10000003 3300031456 Bacteria 590921
44 Ga0307509_10068627 3300031507 Bacteria 3709
45 Ga0307408_100477056 3300031548 Bacteria 1087
46 Ga0307508_10005405 3300031616 Bacteria 12155
47 Ga0307405_10103516 3300031731 Bacteria 1914
48 Ga0307405_10145581 3300031731 Bacteria 1659
49 Ga0307410_10313352 3300031852 Bacteria 1242
50 Ga0307406_10247274 3300031901 Bacteria 1341
51 Ga0307409_100054444 3300031995 Bacteria 3081
52 Ga0307409_100082874 3300031995 Bacteria 2598
53 Ga0307416_100147382 3300032002 Bacteria 2152
54 Ga0307416_100174168 3300032002 Bacteria 2007
55 Ga0307414_10465322 3300032004 Bacteria 1112
56 Ga0307415_100122688 3300032126 Bacteria 1951
57 Ga0307415_100181140 3300032126 Bacteria 1653
58 Ga0307507_10067161 3300033179 Bacteria 3281
59 Ga0395900_0078760 3300037418 Bacteria 3386
60 Ga0395898_0016693 3300037466 Bacteria 7504
61 Ga0395898_0352088 3300037466 Bacteria 1404
62 Ga0395901_0001632 3300038443 Bacteria 23197
63 Ga0395901_0034473 3300038443 Bacteria 5227
64 Ga0466969_0013614 3300044656 Bacteria 4282
65 Ga0466969_0029223 3300044656 Bacteria 2815
66 Ga0466965_0034637 3300044683 Bacteria 2470
67 Ga0466965_0064769 3300044683 Bacteria 1830
68 Ga0466966_0011622 3300044684 Bacteria 5836
69 Ga0466966_0024629 3300044684 Bacteria 3936
70 Ga0466966_0077556 3300044684 Bacteria 2073
71 Ga0466961_0003711 3300044693 Bacteria 9547
72 Ga0466961_0023847 3300044693 Bacteria 3937
73 Ga0466968_0016735 3300044735 Bacteria 2922
74 Ga0466970_0000286 3300044765 Bacteria 24768
75 Ga0466970_0010678 3300044765 Bacteria 4666
76 Ga0466970_0021641 3300044765 Bacteria 3351
77 Ga0466970_0022551 3300044765 Bacteria 3286
78 Ga0466970_0054901 3300044765 Bacteria 2127
79 Ga0466970_0073126 3300044765 Bacteria 1845
80 Ga0466957_0117139 3300044842 Bacteria 1695
81 Ga0466959_0020544 3300045049 Bacteria 4867
82 Ga0466959_0039913 3300045049 Bacteria 3469
83 Ga0466958_0015882 3300045836 Bacteria 4327
84 Ga0495592_0004528 3300046454 Bacteria 10180
85 Ga0495603_0001547 3300046455 Bacteria 13469
86 Ga0495603_0009166 3300046455 Bacteria 5979
87 Ga0495629_0068878 3300046459 Bacteria 2469
88 Ga0495651_0000202 3300046462 Bacteria 45262
89 Ga0495651_0054479 3300046462 Bacteria 3075
90 Ga0495653_0005309 3300046463 Bacteria 10480
91 Ga0495580_0038123 3300046472 Bacteria 3444
92 Ga0495662_0000014 3300046476 Bacteria 62198
93 Ga0495664_0002743 3300046477 Bacteria 9471
94 Ga0495585_0028756 3300046492 Bacteria 3167
95 Ga0495594_0185517 3300046499 Bacteria 1184
96 Ga0495596_0033796 3300046500 Bacteria 2035
97 Ga0495608_0010023 3300046511 Bacteria 6611
98 Ga0495610_0009036 3300046512 Bacteria 6357
99 Ga0495616_0105668 3300046513 Bacteria 1314
100 Ga0495628_0007024 3300046516 Bacteria 9758
101 Ga0495630_0017175 3300046517 Bacteria 5298
102 Ga0495643_0038751 3300046522 Bacteria 2608
103 Ga0495643_0105128 3300046522 Bacteria 1442
104 Ga0495648_0117011 3300046524 Bacteria 1439
105 Ga0495666_0006814 3300046526 Bacteria 5736
106 Ga0495666_0053572 3300046526 Bacteria 1936
107 Ga0495652_0008684 3300046529 Bacteria 9262
108 Ga0495652_0050865 3300046529 Bacteria 3541
109 Ga0495640_0004565 3300046533 Bacteria 11038
110 Ga0495586_0151169 3300046535 Bacteria 1306
111 Ga0495587_0009913 3300046536 Bacteria 6080
112 Ga0495645_0025600 3300046543 Bacteria 4283
113 Ga0495633_0075071 3300046558 Bacteria 1575
114 Ga0495667_0004186 3300046559 Bacteria 9714
115 Ga0495667_0032160 3300046559 Bacteria 3518
116 Ga0495668_0014300 3300046616 Bacteria 4657
117 Ga0495634_0028819 3300046642 Bacteria 3849
118 Ga0495634_0085063 3300046642 Bacteria 2062
119 Ga0495635_0012428 3300046663 Bacteria 5965
120 Ga0495661_0075624 3300046665 Bacteria 1957
121 Ga0495657_0116477 3300046675 Bacteria 1687
122 Ga0495599_0005067 3300046678 Bacteria 7845
123 Ga0495623_0025309 3300046679 Bacteria 3822
124 Ga0495646_0000962 3300046680 Bacteria 16467
125 Ga0495613_0010708 3300046689 Bacteria 6801
126 Ga0495613_0011514 3300046689 Bacteria 6579
127 Ga0495624_0039416 3300046690 Bacteria 3029
128 Ga0495600_0001404 3300046809 Bacteria 13296
129 Ga0495600_0024597 3300046809 Bacteria 3877
130 Ga0495604_0000206 3300047317 Bacteria 53972
131 Ga0495604_0000371 3300047317 Bacteria 40473
132 Ga0495674_0009430 3300047319 Bacteria 9274
133 Ga0495672_0111826 3300047320 Bacteria 1465
134 Ga0495676_0001042 3300047321 Bacteria 23408
135 Ga0495676_0088094 3300047321 Bacteria 2329
136 Ga0495687_037905 3300047443 Bacteria 2143
137 Ga0495675_0013407 3300047444 Bacteria 5174
138 Ga0495685_017521 3300047447 Bacteria 2453
139 Ga0495684_0003520 3300047471 Bacteria 12252
140 Ga0495684_0041670 3300047471 Bacteria 3518
141 Ga0495602_0037404 3300048088 Bacteria 4505
142 Ga0495614_0045237 3300048089 Bacteria 1888
143 Ga0495626_0005945 3300048091 Bacteria 7021
144 Ga0501047_0015623 3300049581 Bacteria 7234
145 nmdc:mga08y16_30997_c1 3300050511 Bacteria 5623
146 Ga0495601_0000608 3300053077 Bacteria 19061
147 Ga0495601_0067220 3300053077 Bacteria 2283
148 Ga0495619_0455005 3300053085 Bacteria 882
149 Ga0466962_0004148 3300061719 Bacteria 6949
150 Ga0466962_0019193 3300061719 Bacteria 3283
151 Ga0466962_0026808 3300061719 Bacteria 2767

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053085 Ga0495619_0455005 Ga0495619_0455005_172_870 224
2 3300047320 Ga0495672_0111826 Ga0495672_0111826_153_1040 248
3 3300037466 Ga0395898_0352088 Ga0395898_0352088_592_1371 253
4 3300025728 Ga0207655_1012090 Ga0207655_10120905 256
5 3300044656 Ga0466969_0029223 Ga0466969_0029223_821_1774 263
6 3300044684 Ga0466966_0024629 Ga0466966_0024629_322_1275 263
7 3300044842 Ga0466957_0117139 Ga0466957_0117139_128_1081 263
8 3300045049 Ga0466959_0039913 Ga0466959_0039913_1355_2308 263
9 3300045836 Ga0466958_0015882 Ga0466958_0015882_1845_2798 263
10 3300061719 Ga0466962_0004148 Ga0466962_0004148_3533_4486 263
11 3300046454 Ga0495592_0004528 Ga0495592_0004528_8442_9308 266
12 3300046462 Ga0495651_0054479 Ga0495651_0054479_172_1038 266
13 3300046463 Ga0495653_0005309 Ga0495653_0005309_8143_9009 266
14 3300046476 Ga0495662_0000014 Ga0495662_0000014_6350_7216 266
15 3300046477 Ga0495664_0002743 Ga0495664_0002743_172_1038 266
16 3300046511 Ga0495608_0010023 Ga0495608_0010023_1415_2281 266
17 3300046516 Ga0495628_0007024 Ga0495628_0007024_6350_7216 266
18 3300046517 Ga0495630_0017175 Ga0495630_0017175_1001_1867 266
19 3300046526 Ga0495666_0006814 Ga0495666_0006814_4734_5600 266
20 3300046529 Ga0495652_0008684 Ga0495652_0008684_1521_2387 266
21 3300046533 Ga0495640_0004565 Ga0495640_0004565_8938_9804 266
22 3300046535 Ga0495586_0151169 Ga0495586_0151169_77_943 266
23 3300046536 Ga0495587_0009913 Ga0495587_0009913_3305_4171 266
24 3300046543 Ga0495645_0025600 Ga0495645_0025600_1717_2583 266
25 3300046559 Ga0495667_0032160 Ga0495667_0032160_2481_3347 266
26 3300046642 Ga0495634_0028819 Ga0495634_0028819_2812_3678 266
27 3300046663 Ga0495635_0012428 Ga0495635_0012428_4928_5794 266
28 3300046678 Ga0495599_0005067 Ga0495599_0005067_147_1013 266
29 3300046679 Ga0495623_0025309 Ga0495623_0025309_476_1342 266
30 3300046680 Ga0495646_0000962 Ga0495646_0000962_6650_7516 266
31 3300046689 Ga0495613_0011514 Ga0495613_0011514_172_1038 266
32 3300046809 Ga0495600_0024597 Ga0495600_0024597_2840_3706 266
33 3300047317 Ga0495604_0000206 Ga0495604_0000206_52935_53801 266
34 3300047319 Ga0495674_0009430 Ga0495674_0009430_138_1004 266
35 3300047471 Ga0495684_0041670 Ga0495684_0041670_2481_3347 266
36 3300048088 Ga0495602_0037404 Ga0495602_0037404_818_1684 266
37 3300053077 Ga0495601_0067220 Ga0495601_0067220_170_1036 266
38 3300009094 Ga0111539_10037412 Ga0111539_100374123 272
39 3300050511 nmdc:mga08y16_30997_c1 nmdc:mga08y16_30997_c1_3161_4024 272
40 3300005347 Ga0070668_100044815 Ga0070668_1000448153 273
41 3300005842 Ga0068858_100013962 Ga0068858_1000139624 273
42 3300005844 Ga0068862_100138616 Ga0068862_1001386162 273
43 3300025931 Ga0207644_10225310 Ga0207644_102253101 273
44 3300026035 Ga0207703_10233364 Ga0207703_102333641 273
45 3300028381 Ga0268264_10323859 Ga0268264_103238592 273
46 3300033179 Ga0307507_10067161 Ga0307507_100671611 273
47 3300028794 Ga0307515_10287979 Ga0307515_102879792 274
48 3300046499 Ga0495594_0185517 Ga0495594_0185517_198_1085 274
49 3300046500 Ga0495596_0033796 Ga0495596_0033796_258_1145 274
50 3300046522 Ga0495643_0038751 Ga0495643_0038751_1028_1915 274
51 3300046524 Ga0495648_0117011 Ga0495648_0117011_324_1211 274
52 iso_pu_bacteria 2767802112 2768644877 276
53 3300031507 Ga0307509_10068627 Ga0307509_100686274 277
54 3300025898 Ga0207692_10202053 Ga0207692_102020531 279
55 3300049581 Ga0501047_0015623 Ga0501047_0015623_47_949 280
56 3300003320 rootH2_10052650 rootH2_100526502 281
57 iso_pu_bacteria 2643221548 2643761611 281
58 3300037418 Ga0395900_0078760 Ga0395900_0078760_1604_2494 282
59 3300037466 Ga0395898_0016693 Ga0395898_0016693_2885_3775 282
60 3300038443 Ga0395901_0034473 Ga0395901_0034473_3628_4518 282
61 3300044684 Ga0466966_0077556 Ga0466966_0077556_1058_1912 282
62 3300044765 Ga0466970_0000286 Ga0466970_0000286_20234_21130 282
63 3300045049 Ga0466959_0020544 Ga0466959_0020544_2137_2991 282
64 3300061719 Ga0466962_0019193 Ga0466962_0019193_2178_3032 282
65 iso_pu_bacteria 2558860112 2558908875 282
66 iso_pu_bacteria 2558860280 2559432311 283
67 iso_pu_bacteria 2919034639 2919035117 284
68 3300031731 Ga0307405_10145581 Ga0307405_101455812 285
69 3300031901 Ga0307406_10247274 Ga0307406_102472742 285
70 3300031995 Ga0307409_100082874 Ga0307409_1000828742 285
71 3300032002 Ga0307416_100147382 Ga0307416_1001473823 285
72 iso_pu_bacteria 2643221647 2644262160 286
73 3300005981 Ga0081538_10026782 Ga0081538_100267822 287
74 3300031548 Ga0307408_100477056 Ga0307408_1004770561 287
75 3300031731 Ga0307405_10103516 Ga0307405_101035162 287
76 3300031852 Ga0307410_10313352 Ga0307410_103133521 287
77 3300032002 Ga0307416_100174168 Ga0307416_1001741682 287
78 3300032004 Ga0307414_10465322 Ga0307414_104653221 287
79 3300032126 Ga0307415_100122688 Ga0307415_1001226882 287
80 iso_pu_bacteria 2912723979 2912728704 287
81 3300005981 Ga0081538_10003032 Ga0081538_1000303222 288
82 3300031456 Ga0307513_10000003 Ga0307513_10000003253 289
83 3300044684 Ga0466966_0011622 Ga0466966_0011622_1387_2262 289
84 3300044693 Ga0466961_0023847 Ga0466961_0023847_2335_3210 289
85 3300046522 Ga0495643_0105128 Ga0495643_0105128_541_1419 289
86 3300061719 Ga0466962_0026808 Ga0466962_0026808_390_1265 289
87 iso_pu_bacteria 2818991463 2819696981 289
88 3300005467 Ga0070706_100182231 Ga0070706_1001822312 290
89 3300005471 Ga0070698_100194180 Ga0070698_1001941802 290
90 3300005981 Ga0081538_10013476 Ga0081538_100134768 290
91 3300005983 Ga0081540_1000232 Ga0081540_100023242 290
92 3300005985 Ga0081539_10030831 Ga0081539_100308313 290
93 3300006028 Ga0070717_10216351 Ga0070717_102163511 290
94 3300025910 Ga0207684_10043169 Ga0207684_100431693 290
95 3300044765 Ga0466970_0054901 Ga0466970_0054901_502_1374 290
96 iso_pu_bacteria 2954701450 2954707234 290
97 3300044693 Ga0466961_0003711 Ga0466961_0003711_5248_6141 291
98 3300003203 JGI25406J46586_10001752 JGI25406J46586_100017527 292
99 3300005985 Ga0081539_10000137 Ga0081539_1000013778 292
100 3300005985 Ga0081539_10001666 Ga0081539_1000166614 292
101 3300009148 Ga0105243_10002075 Ga0105243_1000207516 292
102 3300011119 Ga0105246_10001238 Ga0105246_100012388 292
103 3300046462 Ga0495651_0000202 Ga0495651_0000202_32083_32970 292
104 3300046529 Ga0495652_0050865 Ga0495652_0050865_2433_3320 292
105 3300046559 Ga0495667_0004186 Ga0495667_0004186_6552_7439 292
106 3300046675 Ga0495657_0116477 Ga0495657_0116477_144_1031 292
107 3300046689 Ga0495613_0010708 Ga0495613_0010708_5280_6167 292
108 3300046809 Ga0495600_0001404 Ga0495600_0001404_7017_7904 292
109 3300047317 Ga0495604_0000371 Ga0495604_0000371_27402_28289 292
110 3300047444 Ga0495675_0013407 Ga0495675_0013407_3204_4091 292
111 3300047471 Ga0495684_0003520 Ga0495684_0003520_6754_7641 292
112 3300005981 Ga0081538_10005933 Ga0081538_100059333 293
113 3300031616 Ga0307508_10005405 Ga0307508_100054055 293
114 3300031995 Ga0307409_100054444 Ga0307409_1000544443 293
115 3300032126 Ga0307415_100181140 Ga0307415_1001811402 293
116 iso_pu_bacteria 2844849076 2844850942 293
117 3300044656 Ga0466969_0013614 Ga0466969_0013614_1102_1986 294
118 3300044765 Ga0466970_0073126 Ga0466970_0073126_179_1063 294
119 3300053077 Ga0495601_0000608 Ga0495601_0000608_11928_12833 294
120 iso_pu_bacteria 2867346516 2867352795 294
121 3300003320 rootH2_10018243 rootH2_100182433 295
122 3300044765 Ga0466970_0021641 Ga0466970_0021641_1551_2444 296
123 3300046455 Ga0495603_0001547 Ga0495603_0001547_9833_10726 296
124 3300047321 Ga0495676_0001042 Ga0495676_0001042_10766_11659 296
125 3300048089 Ga0495614_0045237 Ga0495614_0045237_107_1000 296
126 3300011119 Ga0105246_10000119 Ga0105246_1000011911 297
127 3300046455 Ga0495603_0009166 Ga0495603_0009166_3748_4653 297
128 3300046459 Ga0495629_0068878 Ga0495629_0068878_628_1533 297
129 3300046492 Ga0495585_0028756 Ga0495585_0028756_1273_2178 297
130 3300046512 Ga0495610_0009036 Ga0495610_0009036_3523_4428 297
131 3300046513 Ga0495616_0105668 Ga0495616_0105668_299_1204 297
132 3300046526 Ga0495666_0053572 Ga0495666_0053572_927_1832 297
133 3300046558 Ga0495633_0075071 Ga0495633_0075071_182_1087 297
134 3300046616 Ga0495668_0014300 Ga0495668_0014300_1118_2023 297
135 3300046642 Ga0495634_0085063 Ga0495634_0085063_18_923 297
136 3300046665 Ga0495661_0075624 Ga0495661_0075624_767_1672 297
137 3300046690 Ga0495624_0039416 Ga0495624_0039416_804_1709 297
138 3300047321 Ga0495676_0088094 Ga0495676_0088094_98_1003 297
139 3300047443 Ga0495687_037905 Ga0495687_037905_688_1593 297
140 3300047447 Ga0495685_017521 Ga0495685_017521_475_1380 297
141 3300048091 Ga0495626_0005945 Ga0495626_0005945_324_1229 297
142 3300009036 Ga0105244_10007927 Ga0105244_100079276 298
143 3300009098 Ga0105245_10329275 Ga0105245_103292752 298
144 3300011119 Ga0105246_10003655 Ga0105246_100036556 298
145 3300044683 Ga0466965_0034637 Ga0466965_0034637_1370_2266 298
146 3300044765 Ga0466970_0022551 Ga0466970_0022551_246_1142 298
147 3300002773 JGI25152J39213_1000019 JGI25152J39213_100001992 299
148 3300005327 Ga0070658_10000442 Ga0070658_1000044214 299
149 3300005455 Ga0070663_100011234 Ga0070663_1000112348 299
150 3300005563 Ga0068855_100009727 Ga0068855_10000972712 299
151 3300013104 Ga0157370_10057402 Ga0157370_100574023 299
152 3300025245 Ga0207425_1005889 Ga0207425_10058894 299
153 3300025258 Ga0209129_1000046 Ga0209129_1000046123 299
154 3300025294 Ga0209025_1000543 Ga0209025_100054313 299
155 3300025909 Ga0207705_10000001 Ga0207705_100000011321 299
156 3300025949 Ga0207667_10006674 Ga0207667_100066746 299
157 3300026067 Ga0207678_10081366 Ga0207678_100813663 299
158 3300038443 Ga0395901_0001632 Ga0395901_0001632_20396_21328 299
159 3300044683 Ga0466965_0064769 Ga0466965_0064769_344_1276 299
160 3300044735 Ga0466968_0016735 Ga0466968_0016735_1187_2086 299
161 3300044765 Ga0466970_0010678 Ga0466970_0010678_1634_2566 299
162 3300046472 Ga0495580_0038123 Ga0495580_0038123_808_1707 299

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17765

MLTR_LBD

MmyB-like transcription regulator ligand binding domain

145

311

0.99

PF13560

HTH_31

Helix-turn-helix domain

41

119

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
7ewe-assembly3.cif.gz_E mycobacterium tuberculosis higa2 (form iii) 0.9055 36 76
6ltz-assembly1.cif.gz_A induced dna bending by unique dimerization of higa antitoxin 0.838 29 76
3zkc-assembly1.cif.gz_A crystal structure of the master regulator for biofilm formation sinr in complex with dna. 0.8309 35 78
3qq6-assembly1.cif.gz_A the n-terminal dna binding domain of sinr from bacillus subtilis 0.8118 35 86
1zz7-assembly1.cif.gz_B-2 crystal structure of feii hppe in complex with substrate form 1 0.7609 5 82
ID Description Score Start End Superfamily
3zkcA00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.8309 35 78 1.10.260.40
1zz9B01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.7714 2 82 1.10.260.40
4yarA01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.7707 37 81 1.10.260.40
3zkcB00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.76 7 86 1.10.260.40
5tn0A00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.7581 8 78 1.10.260.40
ID Description Score Start End GO Terms
AF-A0A2S8L602-F1-model_v4 deleted 0.996 1 88
AF-A0A7K2MBS9-F1-model_v4 Helix-turn-helix domain-containing protein 0.9868 1 78 GO:0003677
AF-A0A7K2MBS9-F1-model_v4 Helix-turn-helix domain-containing protein 0.9745 1 78 GO:0003677
AF-A0A2S8L602-F1-model_v4 deleted 0.974 1 88
AF-A0A1Q5ATA0-F1-model_v4 Transcriptional regulator 0.9707 1 284 GO:0003677

Feature Viewer

pLDDT pTM Quality
87.32 0.82 High
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Predicted Structure (AlphaFold2)

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