F237591

General Info

Members Datasets Scaffolds Average Seq Length
161 105 322 309

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0399820|Ga0453684_0399820_63_1082
Length 339
Sequence MARRPAHGRARLSAAGDDRAVTAPTGLDQAIEDYLAYLRVERGVADATLKAYRGDLTDFAMSRGAVATWADGPEVAQRYLSARARRGRPNEPRLAPTSLRRRTAAIRGFYRFAYGDGLITTDVAAHLDLPKQPRLLPETLTVDETIRLLEAAGDLPPDDREPTDADGIRVRDRALLELLYAAGLRVSEALGLDREHVTLDAGFVRVIGKGDKERMVPVGEVALEWLGRYLAWPRSAWLERAGEGDGPGSPVFVTGRGGRLRREQAWHTVKAAAEAAGLGDRISPHTLRHSFATHMLEGGADLRVVQELLGHASISTTQLYTHLTGERIREVYARAHPRA

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
5 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
14 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
15 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
16 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
17 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
18 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
19 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
20 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
21 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
22 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
23 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
27 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
30 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
31 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
32 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
33 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
46 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
48 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
49 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
50 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
51 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
52 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
53 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
54 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
55 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
56 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
57 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
58 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
59 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
60 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
61 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
62 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
63 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
64 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
65 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
66 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
67 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
68 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
69 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
70 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
71 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
72 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
73 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
74 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
75 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
83 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
84 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
85 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
86 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
87 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
88 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
89 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
90 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
91 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
92 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
93 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
94 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
95 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
97 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
98 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
99 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
100 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
101 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
102 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
103 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
104 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
105 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.11
Nodule 0
Rhizoplane 1.24
Rhizosphere 95.03
Stem 0
Stem Tuber 0
Unclassified 1.86

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0399820 3300044712 Bacteria 1539
2 rootH1_10107285 3300003323 Bacteria 2615
3 Ga0070680_100000127 3300005336 Bacteria 45220
4 Ga0070710_10154415 3300005437 Unclassified 1418
5 Ga0070705_100330479 3300005440 Bacteria 1104
6 Ga0070708_100006369 3300005445 Bacteria 9400
7 Ga0070708_100013564 3300005445 Bacteria 6679
8 Ga0070708_100068307 3300005445 Bacteria 3194
9 Ga0070708_100385809 3300005445 Bacteria 1321
10 Ga0070681_10212894 3300005458 Bacteria 1849
11 Ga0070706_100026765 3300005467 Bacteria 5305
12 Ga0070707_100010591 3300005468 Bacteria 8586
13 Ga0070707_100018801 3300005468 Bacteria 6505
14 Ga0070698_100017324 3300005471 Bacteria 7592
15 Ga0070699_100005074 3300005518 Bacteria 11591
16 Ga0070699_100094294 3300005518 Bacteria 2620
17 Ga0070697_100092184 3300005536 Bacteria 2506
18 Ga0070695_100160987 3300005545 Bacteria 1575
19 Ga0070696_100014931 3300005546 Bacteria 5215
20 Ga0070696_100015534 3300005546 Bacteria 5113
21 Ga0070704_100016138 3300005549 Bacteria 4713
22 Ga0068861_100191312 3300005719 Bacteria 1711
23 Ga0068858_100390052 3300005842 Bacteria 1337
24 Ga0068862_100415026 3300005844 Bacteria 1262
25 Ga0075365_10122189 3300006038 Unclassified 1797
26 Ga0075365_10130156 3300006038 Bacteria 1741
27 Ga0075363_100046340 3300006048 Bacteria 2306
28 Ga0075433_10411323 3300006852 Unclassified 1193
29 Ga0075429_100344657 3300006880 Bacteria 1304
30 Ga0068865_100305908 3300006881 Bacteria 1274
31 Ga0111539_10114395 3300009094 Bacteria 3164
32 Ga0111539_10309336 3300009094 Bacteria 1839
33 Ga0114129_10000135 3300009147 Bacteria 76177
34 Ga0114129_10020996 3300009147 Bacteria 9275
35 Ga0105241_10582726 3300009174 Bacteria 1008
36 Ga0105242_10305704 3300009176 Bacteria 1453
37 Ga0105239_10332904 3300010375 Bacteria 1713
38 Ga0105246_10021408 3300011119 Bacteria 4161
39 Ga0157378_10225697 3300013297 Bacteria 1782
40 Ga0163163_10033076 3300014325 Bacteria 5000
41 Ga0163163_10338664 3300014325 Bacteria 1559
42 Ga0157380_10177483 3300014326 Bacteria 1868
43 Ga0157380_10279933 3300014326 Bacteria 1526
44 Ga0207645_10245780 3300025907 Bacteria 1183
45 Ga0207684_10023414 3300025910 Bacteria 5273
46 Ga0207660_10000001 3300025917 Bacteria 1034169
47 Ga0207662_10042235 3300025918 Bacteria 2687
48 Ga0207646_10047410 3300025922 Bacteria 3853
49 Ga0207646_10109410 3300025922 Bacteria 2479
50 Ga0207706_10114981 3300025933 Bacteria 2366
51 Ga0207677_10157432 3300026023 Bacteria 1761
52 Ga0207708_10232468 3300026075 Bacteria 1480
53 Ga0207648_10156124 3300026089 Bacteria 2014
54 Ga0207676_10417705 3300026095 Bacteria 1257
55 Ga0207674_10157806 3300026116 Bacteria 2224
56 Ga0207675_100156989 3300026118 Bacteria 2168
57 Ga0209998_10000596 3300027717 Bacteria 9708
58 Ga0209974_10006838 3300027876 Bacteria 3958
59 Ga0207428_10143073 3300027907 Bacteria 1824
60 Ga0265337_1007144 3300028556 Bacteria 4214
61 Ga0265337_1051411 3300028556 Bacteria 1160
62 Ga0265326_10015010 3300028558 Bacteria 2253
63 Ga0265319_1005219 3300028563 Bacteria 6269
64 Ga0265319_1070699 3300028563 Bacteria 1119
65 Ga0265318_10014608 3300028577 Bacteria 3292
66 Ga0265318_10026083 3300028577 Bacteria 2303
67 Ga0265322_10008919 3300028654 Bacteria 2916
68 Ga0265322_10053052 3300028654 Bacteria 1150
69 Ga0265338_10177087 3300028800 Bacteria 1629
70 Ga0265324_10003485 3300029957 Bacteria 7453
71 Ga0265332_10057247 3300031238 Bacteria 1670
72 Ga0265320_10048173 3300031240 Bacteria 2081
73 Ga0265325_10012222 3300031241 Bacteria 4913
74 Ga0265340_10003415 3300031247 Bacteria 8969
75 Ga0265339_10019368 3300031249 Bacteria 3997
76 Ga0265339_10033542 3300031249 Bacteria 2890
77 Ga0265331_10040342 3300031250 Bacteria 2271
78 Ga0265316_10009134 3300031344 Bacteria 9132
79 Ga0265316_10092478 3300031344 Bacteria 2306
80 Ga0265314_10015480 3300031711 Bacteria 6052
81 Ga0265314_10017032 3300031711 Bacteria 5715
82 Ga0265314_10062910 3300031711 Bacteria 2520
83 Ga0265342_10028320 3300031712 Bacteria 3493
84 Ga0265342_10086053 3300031712 Bacteria 1808
85 Ga0265342_10137469 3300031712 Bacteria 1365
86 Ga0316576_10078504 3300031727 Bacteria 2446
87 Ga0316576_10144500 3300031727 Bacteria 1791
88 Ga0307409_100013600 3300031995 Bacteria 5249
89 Ga0316574_0029560 3300035398 Bacteria 3311
90 Ga0316574_0147203 3300035398 Bacteria 1518
91 Ga0373947_0233378 3300035725 Bacteria 1212
92 Ga0316584_0067558 3300036712 Bacteria 2679
93 Ga0439460_0035285 3300042461 Bacteria 1446
94 Ga0451577_0178930 3300042876 Bacteria 1912
95 Ga0495680_0047804 3300047322 Bacteria 3363
96 Ga0495684_0076388 3300047471 Bacteria 2544
97 Ga0496105_0198138 3300048908 Bacteria 1640
98 Ga0496112_0000005 3300048915 Bacteria 525541
99 Ga0501031_0017727 3300049568 Bacteria 4630
100 Ga0501036_0350144 3300049572 Bacteria 1233
101 Ga0501038_0048850 3300049574 Bacteria 3660
102 Ga0501040_0062139 3300049576 Bacteria 2569
103 Ga0501040_0069518 3300049576 Bacteria 2429
104 Ga0501040_0131059 3300049576 Bacteria 1763
105 Ga0501041_0128736 3300049577 Bacteria 1577
106 Ga0501042_0013947 3300049578 Bacteria 5475
107 Ga0501042_0058415 3300049578 Bacteria 2753
108 Ga0501048_0127950 3300049582 Bacteria 1796
109 Ga0501048_0233302 3300049582 Bacteria 1306
110 Ga0501067_0042808 3300049583 Bacteria 2515
111 Ga0501068_0012236 3300049584 Bacteria 4855
112 Ga0501068_0123181 3300049584 Bacteria 1618
113 Ga0501068_0128589 3300049584 Bacteria 1583
114 Ga0501069_0008703 3300049585 Bacteria 5346
115 Ga0501071_0207791 3300049587 Bacteria 1472
116 Ga0501072_0044443 3300049588 Bacteria 3493
117 Ga0501072_0117734 3300049588 Bacteria 2116
118 Ga0501073_0037447 3300049589 Bacteria 3444
119 Ga0501073_0150093 3300049589 Bacteria 1615
120 Ga0501074_0070356 3300049590 Bacteria 2516
121 Ga0501074_0141482 3300049590 Bacteria 1721
122 Ga0501075_0036147 3300049591 Bacteria 3686
123 Ga0501076_0181609 3300049592 Bacteria 1715
124 Ga0501076_0314106 3300049592 Bacteria 1285
125 Ga0501077_0018694 3300049593 Bacteria 4383
126 Ga0501079_0071030 3300049741 Bacteria 2689
127 Ga0501079_0086941 3300049741 Bacteria 2420
128 Ga0501079_0098496 3300049741 Bacteria 2266
129 Ga0501079_0103638 3300049741 Bacteria 2207
130 Ga0501079_0147768 3300049741 Bacteria 1832
131 Ga0501080_0105303 3300049742 Bacteria 2615
132 Ga0501080_0209095 3300049742 Bacteria 1789
133 Ga0501080_0293738 3300049742 Bacteria 1475
134 Ga0501081_0014099 3300049743 Bacteria 5267
135 Ga0501081_0048523 3300049743 Bacteria 2922
136 Ga0501081_0093642 3300049743 Bacteria 2115
137 Ga0501081_0144920 3300049743 Bacteria 1704
138 Ga0501081_0182667 3300049743 Bacteria 1517
139 Ga0501035_0143899 3300049822 Bacteria 2072
140 Ga0501045_0038128 3300049824 Bacteria 3495
141 Ga0501045_0068312 3300049824 Bacteria 2610
142 Ga0501045_0350101 3300049824 Bacteria 1100
143 nmdc:mga0yw44_139783_c1 3300050492 Bacteria 1573
144 nmdc:mga0yw44_170776_c1 3300050492 Bacteria 1427
145 nmdc:mga05p37_34778_c1 3300050507 Bacteria 6172
146 nmdc:mga05p37_44_c1 3300050507 Bacteria 107032
147 nmdc:mga09592_417514_c1 3300050508 Bacteria 1159
148 nmdc:mga0n895_258525_c1 3300050512 Bacteria 1767
149 nmdc:mga0a205_315894_c1 3300050515 Bacteria 1434
150 nmdc:mga0a205_71507_c1 3300050515 Bacteria 3350
151 Ga0495601_0010388 3300053077 Bacteria 5538
152 Ga0501084_0007046 3300054114 Bacteria 9269
153 Ga0501084_0163491 3300054114 Bacteria 1878
154 Ga0501084_0347431 3300054114 Bacteria 1253
155 Ga0501082_0011868 3300060353 Bacteria 7487
156 Ga0501082_0012934 3300060353 Bacteria 7174
157 Ga0501082_0097477 3300060353 Bacteria 2542
158 Ga0530510_0022834 3300061734 Bacteria 4458
159 Ga0530510_0054372 3300061734 Bacteria 2893
160 Ga0530510_0118635 3300061734 Bacteria 1941
161 Ga0530510_0135026 3300061734 Bacteria 1816
162 Ga0453684_0399820
163 rootH1_10107285
164 Ga0070680_100000127
165 Ga0070710_10154415
166 Ga0070705_100330479
167 Ga0070708_100006369
168 Ga0070708_100013564
169 Ga0070708_100068307
170 Ga0070708_100385809
171 Ga0070681_10212894
172 Ga0070706_100026765
173 Ga0070707_100010591
174 Ga0070707_100018801
175 Ga0070698_100017324
176 Ga0070699_100005074
177 Ga0070699_100094294
178 Ga0070697_100092184
179 Ga0070695_100160987
180 Ga0070696_100014931
181 Ga0070696_100015534
182 Ga0070704_100016138
183 Ga0068861_100191312
184 Ga0068858_100390052
185 Ga0068862_100415026
186 Ga0075365_10122189
187 Ga0075365_10130156
188 Ga0075363_100046340
189 Ga0075433_10411323
190 Ga0075429_100344657
191 Ga0068865_100305908
192 Ga0111539_10114395
193 Ga0111539_10309336
194 Ga0114129_10000135
195 Ga0114129_10020996
196 Ga0105241_10582726
197 Ga0105242_10305704
198 Ga0105239_10332904
199 Ga0105246_10021408
200 Ga0157378_10225697
201 Ga0163163_10033076
202 Ga0163163_10338664
203 Ga0157380_10177483
204 Ga0157380_10279933
205 Ga0207645_10245780
206 Ga0207684_10023414
207 Ga0207660_10000001
208 Ga0207662_10042235
209 Ga0207646_10047410
210 Ga0207646_10109410
211 Ga0207706_10114981
212 Ga0207677_10157432
213 Ga0207708_10232468
214 Ga0207648_10156124
215 Ga0207676_10417705
216 Ga0207674_10157806
217 Ga0207675_100156989
218 Ga0209998_10000596
219 Ga0209974_10006838
220 Ga0207428_10143073
221 Ga0265337_1007144
222 Ga0265337_1051411
223 Ga0265326_10015010
224 Ga0265319_1005219
225 Ga0265319_1070699
226 Ga0265318_10014608
227 Ga0265318_10026083
228 Ga0265322_10008919
229 Ga0265322_10053052
230 Ga0265338_10177087
231 Ga0265324_10003485
232 Ga0265332_10057247
233 Ga0265320_10048173
234 Ga0265325_10012222
235 Ga0265340_10003415
236 Ga0265339_10019368
237 Ga0265339_10033542
238 Ga0265331_10040342
239 Ga0265316_10009134
240 Ga0265316_10092478
241 Ga0265314_10015480
242 Ga0265314_10017032
243 Ga0265314_10062910
244 Ga0265342_10028320
245 Ga0265342_10086053
246 Ga0265342_10137469
247 Ga0316576_10078504
248 Ga0316576_10144500
249 Ga0307409_100013600
250 Ga0316574_0029560
251 Ga0316574_0147203
252 Ga0373947_0233378
253 Ga0316584_0067558
254 Ga0439460_0035285
255 Ga0451577_0178930
256 Ga0495680_0047804
257 Ga0495684_0076388
258 Ga0496105_0198138
259 Ga0496112_0000005
260 Ga0501031_0017727
261 Ga0501036_0350144
262 Ga0501038_0048850
263 Ga0501040_0062139
264 Ga0501040_0069518
265 Ga0501040_0131059
266 Ga0501041_0128736
267 Ga0501042_0013947
268 Ga0501042_0058415
269 Ga0501048_0127950
270 Ga0501048_0233302
271 Ga0501067_0042808
272 Ga0501068_0012236
273 Ga0501068_0123181
274 Ga0501068_0128589
275 Ga0501069_0008703
276 Ga0501071_0207791
277 Ga0501072_0044443
278 Ga0501072_0117734
279 Ga0501073_0037447
280 Ga0501073_0150093
281 Ga0501074_0070356
282 Ga0501074_0141482
283 Ga0501075_0036147
284 Ga0501076_0181609
285 Ga0501076_0314106
286 Ga0501077_0018694
287 Ga0501079_0071030
288 Ga0501079_0086941
289 Ga0501079_0098496
290 Ga0501079_0103638
291 Ga0501079_0147768
292 Ga0501080_0105303
293 Ga0501080_0209095
294 Ga0501080_0293738
295 Ga0501081_0014099
296 Ga0501081_0048523
297 Ga0501081_0093642
298 Ga0501081_0144920
299 Ga0501081_0182667
300 Ga0501035_0143899
301 Ga0501045_0038128
302 Ga0501045_0068312
303 Ga0501045_0350101
304 nmdc:mga0yw44_139783_c1
305 nmdc:mga0yw44_170776_c1
306 nmdc:mga05p37_34778_c1
307 nmdc:mga05p37_44_c1
308 nmdc:mga09592_417514_c1
309 nmdc:mga0n895_258525_c1
310 nmdc:mga0a205_315894_c1
311 nmdc:mga0a205_71507_c1
312 Ga0495601_0010388
313 Ga0501084_0007046
314 Ga0501084_0163491
315 Ga0501084_0347431
316 Ga0501082_0011868
317 Ga0501082_0012934
318 Ga0501082_0097477
319 Ga0530510_0022834
320 Ga0530510_0054372
321 Ga0530510_0118635
322 Ga0530510_0135026

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02899

Phage_int_SAM_1

Phage integrase, N-terminal SAM-like domain

31

117

0.93

PF00589

Phage_integrase

Phage integrase family

138

327

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
3nrw-assembly1.cif.gz_A crystal structure of the n-terminal domain of phage integrase/site-specific recombinase (tnp) from haloarcula marismortui, northeast structural genomics consortium target hmr208a 0.8437 4 102
2oxo-assembly1.cif.gz_A crystallization and structure determination of the core-binding domain of bacteriophage lambda integrase 0.8011 3 96
3nrw-assembly1.cif.gz_A crystal structure of the n-terminal domain of phage integrase/site-specific recombinase (tnp) from haloarcula marismortui, northeast structural genomics consortium target hmr208a 0.8003 4 102
2oxo-assembly1.cif.gz_A crystallization and structure determination of the core-binding domain of bacteriophage lambda integrase 0.7868 3 96
1z19-assembly1.cif.gz_A-2 crystal structure of a lambda integrase(75-356) dimer bound to a coc' core site 0.7858 3 281
ID Description Score Start End Superfamily
af_P9WF33_119_304_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.9251 110 298 1.10.443.10
af_Q2FY74_109_289_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.9251 110 297 1.10.443.10
af_P9WF33_119_304_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.9202 110 298 1.10.443.10
af_Q2FY74_109_289_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.9154 110 297 1.10.443.10
af_P0A8P6_113_288_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.9112 111 297 1.10.443.10
ID Description Score Start End GO Terms
AF-X1KSG8-F1-model_v4 Tyr recombinase domain-containing protein 0.9442 108 256 GO:0003677
GO:0006310
GO:0015074
AF-X1KSG8-F1-model_v4 Tyr recombinase domain-containing protein 0.9315 108 256 GO:0003677
GO:0006310
GO:0015074
AF-X1IKC8-F1-model_v4 Tyr recombinase domain-containing protein 0.9181 108 242 GO:0003677
GO:0006310
GO:0015074
AF-A0A2E7AS56-F1-model_v4 Tyr recombinase domain-containing protein 0.9127 104 278 GO:0003677
GO:0006310
GO:0015074
AF-X1IKC8-F1-model_v4 Tyr recombinase domain-containing protein 0.9045 108 242 GO:0003677
GO:0006310
GO:0015074

Map