F236664

General Info

Members Datasets Scaffolds Average Seq Length
161 106 322 237

Family's Representative Sequence

Representative Sequence 3300006175|Ga0070712_100023508|Ga0070712_1000235083
Length 266
Sequence MTGDPNRPEQPGEHRGRLADKIALITGASRGIGAAVAERFAREGAHVVLAARTVGGLEEADDAVRAAGGSATLVPVDLRDFIKIDELAARILDRWGRLDILVGNAAEFGVFSPLGHIDPATWSEVMELNLTANWRLIRAMDPLLRAAPAGRAIFVTSGVTRGVHPYWGPYAISKAGLEMLVKIYAGEITKTRVRANLIDPGIVRTRLRARAFPGENPARLPPPETVVDAFLSLALPEWTRNGAILDVRDRTRQALRSRRQPVLSDQ

Samples

Sample ID Description Type Environment
1 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
2 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
14 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
26 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
27 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
28 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
31 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
32 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
40 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
41 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
42 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
43 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
44 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
45 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
46 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
47 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
48 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
49 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
50 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
69 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
70 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
71 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
72 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
73 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
74 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
75 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
76 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
77 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
78 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
79 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
80 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
81 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
82 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
83 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
84 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
85 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
86 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
87 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
88 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
89 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
90 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
93 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
94 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
95 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
96 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
97 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
98 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
99 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
100 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
101 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
102 2511231221 Azospirillum lipoferum 4B Isolate Rhizosphere
103 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
104 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
105 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
106 8054002106 Azospirillum lipoferum 59b Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.89
Metatranscriptomes 0
Isolates 3.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.11
Nodule 0
Rhizoplane 1.24
Rhizosphere 81.99
Stem 0
Stem Tuber 0
Unclassified 0.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070712_100023508 3300006175 Bacteria 4073
2 Ga0065715_10095358 3300005293 Bacteria 4103
3 Ga0070658_10439196 3300005327 Bacteria 1124
4 Ga0070683_100597746 3300005329 Bacteria 1056
5 Ga0070680_100017031 3300005336 Bacteria 5724
6 Ga0070660_100034431 3300005339 Bacteria 3827
7 Ga0070671_100020024 3300005355 Bacteria 5451
8 Ga0070671_100180331 3300005355 Bacteria 1788
9 Ga0070674_100284624 3300005356 Bacteria 1312
10 Ga0070673_100211839 3300005364 Bacteria 1674
11 Ga0070673_100643025 3300005364 Bacteria 970
12 Ga0070709_10099362 3300005434 Bacteria 1935
13 Ga0070714_100223046 3300005435 Bacteria 1733
14 Ga0070713_100008458 3300005436 Bacteria 7300
15 Ga0070713_100546632 3300005436 Bacteria 1096
16 Ga0070710_10092195 3300005437 Bacteria 1788
17 Ga0070694_100044351 3300005444 Bacteria 2976
18 Ga0070681_10006827 3300005458 Bacteria 11113
19 Ga0070681_10142519 3300005458 Bacteria 2326
20 Ga0070681_10285135 3300005458 Bacteria 1562
21 Ga0070706_100072698 3300005467 Bacteria 3182
22 Ga0070706_100578025 3300005467 Bacteria 1045
23 Ga0070707_100257333 3300005468 Bacteria 1699
24 Ga0070698_100003229 3300005471 Bacteria 17957
25 Ga0070698_100116314 3300005471 Bacteria 2637
26 Ga0070679_100017271 3300005530 Bacteria 6981
27 Ga0070697_100130644 3300005536 Bacteria 2106
28 Ga0070697_100397356 3300005536 Bacteria 1196
29 Ga0070695_100012697 3300005545 Bacteria 5057
30 Ga0070665_100203819 3300005548 Bacteria 1978
31 Ga0070665_100272717 3300005548 Bacteria 1693
32 Ga0068855_100166224 3300005563 Bacteria 2501
33 Ga0070664_100109397 3300005564 Bacteria 2411
34 Ga0081455_10004048 3300005937 Bacteria 16614
35 Ga0081455_10247804 3300005937 Bacteria 1305
36 Ga0081540_1001876 3300005983 Bacteria 17587
37 Ga0070717_10017178 3300006028 Bacteria 5624
38 Ga0070717_10175732 3300006028 Bacteria 1864
39 Ga0070717_10446413 3300006028 Bacteria 1165
40 Ga0070716_100028859 3300006173 Bacteria 2993
41 Ga0070712_100075165 3300006175 Bacteria 2429
42 Ga0070712_100145302 3300006175 Bacteria 1814
43 Ga0070712_100216610 3300006175 Bacteria 1513
44 Ga0075428_100843357 3300006844 Bacteria 973
45 Ga0075434_100243515 3300006871 Bacteria 1818
46 Ga0075435_100045084 3300007076 Bacteria 3533
47 Ga0099795_10015594 3300007788 Bacteria 2385
48 Ga0105240_10368433 3300009093 Unclassified 1625
49 Ga0105240_10495271 3300009093 Bacteria 1360
50 Ga0105240_10606370 3300009093 Bacteria 1205
51 Ga0105240_11058244 3300009093 Bacteria 865
52 Ga0105245_10037297 3300009098 Bacteria 4321
53 Ga0105237_10112109 3300009545 Bacteria 2720
54 Ga0105237_10322673 3300009545 Bacteria 1548
55 Ga0105238_10005776 3300009551 Bacteria 12247
56 Ga0105238_10390187 3300009551 Bacteria 1384
57 Ga0105238_10520483 3300009551 Bacteria 1192
58 Ga0105239_10579473 3300010375 Bacteria 1279
59 Ga0105239_10847672 3300010375 Bacteria 1048
60 Ga0105239_10910269 3300010375 Bacteria 1010
61 Ga0157378_10089304 3300013297 Bacteria 2798
62 Ga0182008_10082652 3300014497 Bacteria 1581
63 Ga0157379_10155262 3300014968 Bacteria 2064
64 Ga0213873_10008528 3300021358 Bacteria 2097
65 Ga0213873_10030357 3300021358 Bacteria 1338
66 Ga0213874_10083593 3300021377 Bacteria 1038
67 Ga0213876_10034856 3300021384 Bacteria 2655
68 Ga0213875_10000132 3300021388 Bacteria 82929
69 Ga0213875_10003519 3300021388 Bacteria 8897
70 Ga0213875_10011211 3300021388 Bacteria 4466
71 Ga0213875_10077645 3300021388 Bacteria 1550
72 Ga0213871_10032041 3300021441 Bacteria 1376
73 Ga0209130_1001686 3300025284 Bacteria 13426
74 Ga0209025_1000077 3300025294 Bacteria 271958
75 Ga0209758_1001357 3300025297 Bacteria 29357
76 Ga0207426_1000304 3300025302 Bacteria 96312
77 Ga0207699_10363904 3300025906 Bacteria 1023
78 Ga0207705_10265024 3300025909 Bacteria 1313
79 Ga0207684_10046662 3300025910 Bacteria 3675
80 Ga0207684_10078477 3300025910 Bacteria 2808
81 Ga0207707_10059795 3300025912 Bacteria 3315
82 Ga0207707_10168728 3300025912 Bacteria 1912
83 Ga0207695_10108601 3300025913 Bacteria 2758
84 Ga0207671_10040288 3300025914 Bacteria 3458
85 Ga0207693_10033111 3300025915 Bacteria 4079
86 Ga0207693_10039664 3300025915 Bacteria 3708
87 Ga0207693_10077772 3300025915 Bacteria 2598
88 Ga0207663_10097592 3300025916 Bacteria 1965
89 Ga0207663_10363012 3300025916 Bacteria 1099
90 Ga0207660_10043420 3300025917 Bacteria 3160
91 Ga0207657_10055164 3300025919 Bacteria 3434
92 Ga0207657_10209517 3300025919 Bacteria 1565
93 Ga0207694_10000523 3300025924 Bacteria 34682
94 Ga0207700_10372172 3300025928 Bacteria 1248
95 Ga0207700_10385656 3300025928 Bacteria 1226
96 Ga0207700_10692797 3300025928 Bacteria 909
97 Ga0207664_10033499 3300025929 Bacteria 3947
98 Ga0207669_10222057 3300025937 Bacteria 1387
99 Ga0207665_10062343 3300025939 Bacteria 2530
100 Ga0207679_10130424 3300025945 Bacteria 2016
101 Ga0207702_10045483 3300026078 Bacteria 3692
102 Ga0268266_10007041 3300028379 Bacteria 10210
103 Ga0268266_10088611 3300028379 Bacteria 2708
104 Ga0307408_100080943 3300031548 Bacteria 2427
105 Ga0373949_0043674 3300035090 Bacteria 1110
106 Ga0373951_0035530 3300035091 Bacteria 1187
107 Ga0373953_0004822 3300035117 Bacteria 4332
108 Ga0373956_0013399 3300035119 Bacteria 3412
109 Ga0373935_0455494 3300035692 Bacteria 925
110 Ga0395899_0581831 3300037312 Bacteria 715
111 Ga0436364_0717863 3300037853 Bacteria 145182
112 Ga0436364_0875825 3300037853 Bacteria 32110
113 Ga0436364_0992577 3300037853 Bacteria 61189
114 Ga0436364_1078052 3300037853 Bacteria 4153
115 Ga0436364_1118336 3300037853 Bacteria 1044
116 Ga0436365_0377445 3300039437 Bacteria 1393
117 Ga0436365_1114415 3300039437 Bacteria 983
118 Ga0436365_1577443 3300039437 Bacteria 2682
119 Ga0436365_1600543 3300039437 Bacteria 4678
120 Ga0436360_0019149 3300039438 Bacteria 894
121 Ga0436360_0715492 3300039438 Bacteria 874
122 Ga0436360_1327161 3300039438 Bacteria 1645
123 Ga0436361_0222157 3300039447 Bacteria 1613
124 Ga0436361_0424218 3300039447 Bacteria 4537
125 Ga0436363_0525974 3300039450 Bacteria 1845
126 Ga0436363_0780701 3300039450 Bacteria 1082
127 Ga0436363_1696847 3300039450 Bacteria 1515
128 Ga0436362_0236357 3300039453 Bacteria 1479
129 Ga0436362_0536126 3300039453 Bacteria 4236
130 Ga0436362_0772773 3300039453 Bacteria 964
131 Ga0436362_1055356 3300039453 Bacteria 1260
132 Ga0451793_1730928 3300041452 Bacteria 822
133 Ga0451577_0212787 3300042876 Bacteria 1746
134 Ga0451577_0447764 3300042876 Bacteria 1173
135 Ga0453684_0000062 3300044712 Bacteria 487590
136 Ga0453684_0000071 3300044712 Bacteria 448904
137 Ga0466959_0139104 3300045049 Bacteria 1717
138 Ga0451576_0289736 3300045051 Bacteria 1712
139 Ga0495592_0102362 3300046454 Bacteria 2039
140 Ga0495662_0133665 3300046476 Bacteria 1220
141 Ga0495589_0076077 3300046794 Bacteria 1637
142 Ga0495680_0046576 3300047322 Bacteria 3418
143 Ga0496112_0018721 3300048915 Bacteria 6526
144 Ga0501034_0024892 3300049571 Bacteria 6091
145 Ga0501070_0013863 3300049586 Bacteria 6790
146 Ga0501070_0262732 3300049586 Bacteria 1411
147 Ga0501073_0113809 3300049589 Bacteria 1876
148 Ga0501080_0412074 3300049742 Bacteria 1215
149 Ga0501083_0016273 3300049744 Bacteria 5208
150 Ga0501044_0000084 3300049823 Bacteria 114544
151 Ga0501044_0347304 3300049823 Bacteria 1404
152 nmdc:mga0rr50_118217_c1 3300050513 Bacteria 2106
153 Ga0495595_0097640 3300053084 Bacteria 1415
154 Ga0495619_0233080 3300053085 Bacteria 1275
155 Ga0500595_020571 3300053119 Bacteria 2372
156 Ga0501082_0004711 3300060353 Bacteria 11896
157 2512033053 2511231221 Bacteria 6846400
158 2821449347 2821443989 Bacteria 7658172
159 2844533622 2844533157 Bacteria 7517899
160 2897809154 2897803580 Bacteria 7000062
161 8054004891 8054002106 Bacteria 7987183
162 Ga0070712_100023508
163 Ga0065715_10095358
164 Ga0070658_10439196
165 Ga0070683_100597746
166 Ga0070680_100017031
167 Ga0070660_100034431
168 Ga0070671_100020024
169 Ga0070671_100180331
170 Ga0070674_100284624
171 Ga0070673_100211839
172 Ga0070673_100643025
173 Ga0070709_10099362
174 Ga0070714_100223046
175 Ga0070713_100008458
176 Ga0070713_100546632
177 Ga0070710_10092195
178 Ga0070694_100044351
179 Ga0070681_10006827
180 Ga0070681_10142519
181 Ga0070681_10285135
182 Ga0070706_100072698
183 Ga0070706_100578025
184 Ga0070707_100257333
185 Ga0070698_100003229
186 Ga0070698_100116314
187 Ga0070679_100017271
188 Ga0070697_100130644
189 Ga0070697_100397356
190 Ga0070695_100012697
191 Ga0070665_100203819
192 Ga0070665_100272717
193 Ga0068855_100166224
194 Ga0070664_100109397
195 Ga0081455_10004048
196 Ga0081455_10247804
197 Ga0081540_1001876
198 Ga0070717_10017178
199 Ga0070717_10175732
200 Ga0070717_10446413
201 Ga0070716_100028859
202 Ga0070712_100075165
203 Ga0070712_100145302
204 Ga0070712_100216610
205 Ga0075428_100843357
206 Ga0075434_100243515
207 Ga0075435_100045084
208 Ga0099795_10015594
209 Ga0105240_10368433
210 Ga0105240_10495271
211 Ga0105240_10606370
212 Ga0105240_11058244
213 Ga0105245_10037297
214 Ga0105237_10112109
215 Ga0105237_10322673
216 Ga0105238_10005776
217 Ga0105238_10390187
218 Ga0105238_10520483
219 Ga0105239_10579473
220 Ga0105239_10847672
221 Ga0105239_10910269
222 Ga0157378_10089304
223 Ga0182008_10082652
224 Ga0157379_10155262
225 Ga0213873_10008528
226 Ga0213873_10030357
227 Ga0213874_10083593
228 Ga0213876_10034856
229 Ga0213875_10000132
230 Ga0213875_10003519
231 Ga0213875_10011211
232 Ga0213875_10077645
233 Ga0213871_10032041
234 Ga0209130_1001686
235 Ga0209025_1000077
236 Ga0209758_1001357
237 Ga0207426_1000304
238 Ga0207699_10363904
239 Ga0207705_10265024
240 Ga0207684_10046662
241 Ga0207684_10078477
242 Ga0207707_10059795
243 Ga0207707_10168728
244 Ga0207695_10108601
245 Ga0207671_10040288
246 Ga0207693_10033111
247 Ga0207693_10039664
248 Ga0207693_10077772
249 Ga0207663_10097592
250 Ga0207663_10363012
251 Ga0207660_10043420
252 Ga0207657_10055164
253 Ga0207657_10209517
254 Ga0207694_10000523
255 Ga0207700_10372172
256 Ga0207700_10385656
257 Ga0207700_10692797
258 Ga0207664_10033499
259 Ga0207669_10222057
260 Ga0207665_10062343
261 Ga0207679_10130424
262 Ga0207702_10045483
263 Ga0268266_10007041
264 Ga0268266_10088611
265 Ga0307408_100080943
266 Ga0373949_0043674
267 Ga0373951_0035530
268 Ga0373953_0004822
269 Ga0373956_0013399
270 Ga0373935_0455494
271 Ga0395899_0581831
272 Ga0436364_0717863
273 Ga0436364_0875825
274 Ga0436364_0992577
275 Ga0436364_1078052
276 Ga0436364_1118336
277 Ga0436365_0377445
278 Ga0436365_1114415
279 Ga0436365_1577443
280 Ga0436365_1600543
281 Ga0436360_0019149
282 Ga0436360_0715492
283 Ga0436360_1327161
284 Ga0436361_0222157
285 Ga0436361_0424218
286 Ga0436363_0525974
287 Ga0436363_0780701
288 Ga0436363_1696847
289 Ga0436362_0236357
290 Ga0436362_0536126
291 Ga0436362_0772773
292 Ga0436362_1055356
293 Ga0451793_1730928
294 Ga0451577_0212787
295 Ga0451577_0447764
296 Ga0453684_0000062
297 Ga0453684_0000071
298 Ga0466959_0139104
299 Ga0451576_0289736
300 Ga0495592_0102362
301 Ga0495662_0133665
302 Ga0495589_0076077
303 Ga0495680_0046576
304 Ga0496112_0018721
305 Ga0501034_0024892
306 Ga0501070_0013863
307 Ga0501070_0262732
308 Ga0501073_0113809
309 Ga0501080_0412074
310 Ga0501083_0016273
311 Ga0501044_0000084
312 Ga0501044_0347304
313 nmdc:mga0rr50_118217_c1
314 Ga0495595_0097640
315 Ga0495619_0233080
316 Ga0500595_020571
317 Ga0501082_0004711
318 2512033053
319 2821449347
320 2844533622
321 2897809154
322 8054004891

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

21

216

0.98

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

27

220

0.91

PF08659

KR

KR domain

22

188

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
3i1j-assembly1.cif.gz_A structure of a putative short chain dehydrogenase from pseudomonas syringae 0.9682 1 233
3g1t-assembly1.cif.gz_A-2 crystal structure of short chain dehydrogenase from salmonella enterica subsp. enterica serovar typhi str. ct18 0.9595 1 233
3gy0-assembly1.cif.gz_A-2 crystal structure of putatitve short chain dehydrogenase from shigella flexneri 2a str. 301 complexed with nadp 0.9571 1 233
3gz4-assembly1.cif.gz_B crystal structure of putative short chain dehydrogenase from escherichia coli cft073 complexed with nadph 0.9565 3 233
4z0t-assembly1.cif.gz_A crystal structure of a putative oxoacyl-(acyl carrier protein) reductase from brucella ovis 0.9557 5 233
ID Description Score Start End Superfamily
4z0tA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9557 5 233 3.40.50.720
af_A0A0N7KIR0_69_250_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9438 3 164 3.40.50.720
af_Q6PKH6_18_219_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9435 3 188 3.40.50.720
af_A0A0P0Y501_3_211_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9395 3 199 3.40.50.720
af_Q54N15_5_159_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9387 61 181 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A3N1MDE4-F1-model_v4 NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) 0.9915 13 235 GO:0008667
GO:0016020
GO:0019290
AF-A8U1S4-F1-model_v4 Short-chain dehydrogenase/reductase SDR 0.988 1 233 GO:0016491
AF-A0A850PA89-F1-model_v4 SDR family oxidoreductase 0.9837 1 224 GO:0016020
GO:0016491
AF-A0A3N1MDE4-F1-model_v4 NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) 0.9828 13 235 GO:0008667
GO:0016020
GO:0019290
AF-A0A520XJ44-F1-model_v4 deleted 0.9805 69 235

Map