F236327

General Info

Members Datasets Scaffolds Average Seq Length
161 121 322 263

Family's Representative Sequence

Representative Sequence 3300005435|Ga0070714_100103367|Ga0070714_1001033672
Length 285
Sequence MGLRYYKPTSAGRRGASVSDFAEITDRKKPPEKSLVVRLKKTSGRNFHGKITAHQRGGGSRTMYRIIDFKRTKDGVPARVASVEYDPNRSCRVALLHYVDGSKAYILAPEGLKAGAKVESGTAIEPNLGNCLPLENIPPGTVVHNVEMQPGRGGQLCRSAGTSAVMNAREGDWAQITLPSGEVRRVPSKCRATVGILGNADHNVVRLGKAGRKRRMGIRPHVRGVAMNPVAHPMGGGEGRSKGGRHPCSPTGKLAKGGRTRKRRKPSKSAIIRXXKSRRYGQLKV

Samples

Sample ID Description Type Environment
1 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
8 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
13 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
16 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
17 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
22 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
28 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
29 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
30 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
31 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
32 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
33 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
34 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
35 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
36 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
45 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
46 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
47 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
48 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
49 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
50 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
51 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
52 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
53 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
54 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
55 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
56 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
57 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
58 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
59 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
60 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
61 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
63 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
64 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
65 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
66 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
67 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
68 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
69 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
70 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
71 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
72 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
73 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
74 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
75 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
76 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
77 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
78 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
79 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
80 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
81 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
82 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
83 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
84 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
85 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
86 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
87 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
88 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
89 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
90 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
91 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
92 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
93 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
94 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
95 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
96 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
97 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
98 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
99 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
100 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
101 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
102 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
103 3300049129 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
104 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
110 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
111 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
112 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
113 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
114 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
115 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
116 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
117 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
118 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
119 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
120 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
121 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.41
Metatranscriptomes 5.59
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.48
Nodule 0
Rhizoplane 0.62
Rhizosphere 90.06
Stem 0
Stem Tuber 0
Unclassified 1.24

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070714_100103367 3300005435 Unclassified 2513
2 JGI25407J50210_10006354 3300003373 Bacteria 2938
3 JGI25404J52841_10000654 3300003659 Bacteria 5275
4 JGI25404J52841_10007764 3300003659 Bacteria 2274
5 Ga0070658_10089529 3300005327 Bacteria 2534
6 Ga0070671_100001915 3300005355 Bacteria 15937
7 Ga0070688_100357483 3300005365 Bacteria 1071
8 Ga0070709_10025460 3300005434 Bacteria 3496
9 Ga0070714_100086506 3300005435 Bacteria 2739
10 Ga0070708_100294516 3300005445 Bacteria 1528
11 Ga0070681_10152315 3300005458 Bacteria 2238
12 Ga0070681_10222065 3300005458 Bacteria 1805
13 Ga0070707_100078074 3300005468 Bacteria 3194
14 Ga0070684_100310188 3300005535 Bacteria 1449
15 Ga0068853_100002337 3300005539 Bacteria 14172
16 Ga0070695_100054259 3300005545 Bacteria 2579
17 Ga0068855_100103515 3300005563 Bacteria 3275
18 Ga0068855_100110619 3300005563 Bacteria 3153
19 Ga0081538_10002988 3300005981 Bacteria 16122
20 Ga0081538_10034533 3300005981 Bacteria 3341
21 Ga0081540_1016415 3300005983 Bacteria 4636
22 Ga0081540_1128181 3300005983 Bacteria 1041
23 Ga0075370_10090590 3300006353 Bacteria 1764
24 Ga0075428_100034838 3300006844 Bacteria 5551
25 Ga0075428_100044415 3300006844 Bacteria 4884
26 Ga0075428_100198427 3300006844 Bacteria 2170
27 Ga0075430_100011099 3300006846 Bacteria 7635
28 Ga0075430_100016384 3300006846 Bacteria 6311
29 Ga0075431_100048403 3300006847 Bacteria 4385
30 Ga0075431_100054518 3300006847 Bacteria 4123
31 Ga0075431_100221298 3300006847 Bacteria 1931
32 Ga0075429_100036025 3300006880 Bacteria 4303
33 Ga0068865_100331947 3300006881 Bacteria 1226
34 Ga0105240_10173478 3300009093 Bacteria 2551
35 Ga0111539_10433928 3300009094 Bacteria 1530
36 Ga0105245_10497914 3300009098 Bacteria 1234
37 Ga0114129_10127157 3300009147 Bacteria 3503
38 Ga0105242_10268954 3300009176 Bacteria 1543
39 Ga0157370_10064283 3300013104 Bacteria 3474
40 Ga0157369_10214025 3300013105 Bacteria 2019
41 Ga0157377_10145634 3300014745 Bacteria 1460
42 Ga0197907_11158037 3300020069 Bacteria 1861
43 Ga0206356_10479506 3300020070 Bacteria 1768
44 Ga0213873_10023105 3300021358 Bacteria 1479
45 Ga0213875_10052767 3300021388 Bacteria 1904
46 Ga0213875_10180309 3300021388 Bacteria 992
47 Ga0213871_10008780 3300021441 Bacteria 2241
48 Ga0207688_10345905 3300025901 Bacteria 915
49 Ga0207705_10143236 3300025909 Bacteria 1786
50 Ga0207707_10207578 3300025912 Bacteria 1707
51 Ga0207695_10077131 3300025913 Bacteria 3386
52 Ga0207657_10029640 3300025919 Bacteria 4979
53 Ga0207664_10083112 3300025929 Unclassified 2610
54 Ga0207664_10153166 3300025929 Bacteria 1960
55 Ga0207709_10103247 3300025935 Bacteria 1889
56 Ga0207698_10193070 3300026142 Bacteria 1816
57 Ga0265319_1021818 3300028563 Bacteria 2344
58 Ga0265319_1053156 3300028563 Bacteria 1331
59 Ga0265318_10002149 3300028577 Bacteria 10711
60 Ga0265318_10064080 3300028577 Bacteria 1367
61 Ga0265323_10017990 3300028653 Bacteria 2740
62 Ga0265322_10036644 3300028654 Bacteria 1397
63 Ga0265338_10052906 3300028800 Bacteria 3638
64 Ga0265320_10025324 3300031240 Bacteria 3120
65 Ga0265320_10087542 3300031240 Bacteria 1446
66 Ga0265325_10008998 3300031241 Bacteria 5863
67 Ga0265325_10021837 3300031241 Bacteria 3510
68 Ga0265340_10015419 3300031247 Bacteria 3971
69 Ga0265327_10080239 3300031251 Bacteria 1614
70 Ga0265316_10029887 3300031344 Bacteria 4474
71 Ga0265313_10139544 3300031595 Bacteria 1043
72 Ga0316579_10045420 3300031691 Bacteria 2048
73 Ga0265314_10021653 3300031711 Bacteria 4937
74 Ga0316576_10005913 3300031727 Bacteria 7554
75 Ga0316576_10228907 3300031727 Bacteria 1398
76 Ga0307406_10272279 3300031901 Bacteria 1287
77 Ga0307416_100108942 3300032002 Bacteria 2435
78 Ga0307411_10522025 3300032005 Bacteria 1008
79 Ga0316593_10005780 3300032168 Bacteria 3294
80 Ga0316593_10029228 3300032168 Bacteria 1782
81 Ga0316592_1000035 3300033524 Bacteria 10782
82 Ga0316588_1000902 3300033528 Bacteria 4549
83 Ga0316596_1000039 3300033541 Bacteria 13805
84 Ga0316596_1000208 3300033541 Bacteria 8714
85 Ga0373943_0008573 3300035170 Bacteria 4582
86 Ga0316574_0310029 3300035398 Bacteria 1003
87 Ga0373933_0492796 3300035724 Bacteria 803
88 Ga0373947_0023692 3300035725 Bacteria 3573
89 Ga0373937_0494753 3300036401 Bacteria 1162
90 Ga0316582_0031763 3300036647 Bacteria 3230
91 Ga0316584_0107713 3300036712 Bacteria 2085
92 Ga0373925_0045248 3300037068 Bacteria 3269
93 Ga0395899_0171062 3300037312 Bacteria 1530
94 Ga0395900_0214320 3300037418 Bacteria 1943
95 Ga0395898_0434649 3300037466 Bacteria 1250
96 Ga0395905_0070276 3300037471 Bacteria 3280
97 Ga0436364_0754428 3300037853 Bacteria 1563
98 Ga0436364_0806322 3300037853 Bacteria 2425
99 Ga0395901_0197615 3300038443 Bacteria 2108
100 Ga0395901_0310501 3300038443 Bacteria 1633
101 Ga0395901_0657485 3300038443 Bacteria 1050
102 Ga0400484_20003 3300038725 Bacteria 3915
103 Ga0400486_21368 3300038742 Bacteria 5998
104 Ga0400487_04420 3300039110 Bacteria 1128
105 Ga0400487_50276 3300039110 Bacteria 9871
106 Ga0436360_0163442 3300039438 Bacteria 11133
107 Ga0436360_0308283 3300039438 Bacteria 1147
108 Ga0436360_0327488 3300039438 Bacteria 3072
109 Ga0436360_0426765 3300039438 Bacteria 1809
110 Ga0436360_0910367 3300039438 Bacteria 1069
111 Ga0436361_0093054 3300039447 Bacteria 6705
112 Ga0436361_0230525 3300039447 Bacteria 1305
113 Ga0436361_0560336 3300039447 Bacteria 3141
114 Ga0436363_1009094 3300039450 Bacteria 838
115 Ga0436362_0364328 3300039453 Bacteria 5378
116 Ga0436362_0372347 3300039453 Bacteria 2051
117 Ga0436362_0389041 3300039453 Bacteria 4738
118 Ga0451577_0001113 3300042876 Bacteria 38143
119 Ga0466966_0183448 3300044684 Bacteria 1269
120 Ga0466968_0043063 3300044735 Bacteria 1910
121 Ga0451576_0044291 3300045051 Bacteria 4691
122 Ga0451576_0110347 3300045051 Bacteria 2863
123 Ga0451576_0119320 3300045051 Bacteria 2746
124 Ga0495592_0155207 3300046454 Bacteria 1580
125 Ga0495651_0141141 3300046462 Bacteria 1747
126 Ga0495580_0219492 3300046472 Bacteria 1307
127 Ga0495608_0229255 3300046511 Bacteria 1163
128 Ga0495620_0186030 3300046515 Bacteria 802
129 Ga0495630_0057432 3300046517 Bacteria 2917
130 Ga0495630_0058643 3300046517 Bacteria 2886
131 Ga0495657_0301631 3300046675 Bacteria 955
132 Ga0495658_0004414 3300046683 Bacteria 6925
133 Ga0495658_0071483 3300046683 Bacteria 2016
134 Ga0495614_0111985 3300048089 Bacteria 1199
135 Ga0495615_0011418 3300048090 Bacteria 1804
136 Ga0496110_0442354 3300048913 Bacteria 1185
137 Ga0496121_0004571 3300048924 Bacteria 18454
138 Ga0496122_0007916 3300048925 Bacteria 11642
139 Ga0501309_014376 3300049129 Bacteria 1062
140 Ga0501036_0038994 3300049572 Bacteria 4023
141 Ga0501036_0209134 3300049572 Bacteria 1640
142 Ga0501038_0523573 3300049574 Bacteria 904
143 Ga0501039_0031891 3300049575 Bacteria 4062
144 Ga0501039_0046606 3300049575 Bacteria 3349
145 Ga0501040_0429394 3300049576 Bacteria 950
146 Ga0501043_0179208 3300049579 Bacteria 1651
147 Ga0501072_0076996 3300049588 Bacteria 2640
148 Ga0501076_0052178 3300049592 Bacteria 3239
149 Ga0501081_0008928 3300049743 Bacteria 6514
150 Ga0501044_0105348 3300049823 Bacteria 2833
151 nmdc:mga0yw44_128906_c1 3300050492 Bacteria 1636
152 nmdc:mga0yw44_361818_c1 3300050492 Bacteria 978
153 nmdc:mga05p37_719539_c1 3300050507 Bacteria 1106
154 nmdc:mga0qj67_14216_c1 3300050509 Bacteria 6016
155 nmdc:mga06r32_208706_c1 3300050510 Bacteria 1941
156 nmdc:mga06r32_4753_c1 3300050510 Bacteria 12209
157 Ga0495619_0090177 3300053085 Bacteria 2075
158 Ga0500614_010984 3300053123 Bacteria 1952
159 Ga0590075_027813 3300059424 Bacteria 1427
160 Ga0501082_0189151 3300060353 Bacteria 1791
161 Ga0466962_0063338 3300061719 Bacteria 1765
162 Ga0070714_100103367
163 JGI25407J50210_10006354
164 JGI25404J52841_10000654
165 JGI25404J52841_10007764
166 Ga0070658_10089529
167 Ga0070671_100001915
168 Ga0070688_100357483
169 Ga0070709_10025460
170 Ga0070714_100086506
171 Ga0070708_100294516
172 Ga0070681_10152315
173 Ga0070681_10222065
174 Ga0070707_100078074
175 Ga0070684_100310188
176 Ga0068853_100002337
177 Ga0070695_100054259
178 Ga0068855_100103515
179 Ga0068855_100110619
180 Ga0081538_10002988
181 Ga0081538_10034533
182 Ga0081540_1016415
183 Ga0081540_1128181
184 Ga0075370_10090590
185 Ga0075428_100034838
186 Ga0075428_100044415
187 Ga0075428_100198427
188 Ga0075430_100011099
189 Ga0075430_100016384
190 Ga0075431_100048403
191 Ga0075431_100054518
192 Ga0075431_100221298
193 Ga0075429_100036025
194 Ga0068865_100331947
195 Ga0105240_10173478
196 Ga0111539_10433928
197 Ga0105245_10497914
198 Ga0114129_10127157
199 Ga0105242_10268954
200 Ga0157370_10064283
201 Ga0157369_10214025
202 Ga0157377_10145634
203 Ga0197907_11158037
204 Ga0206356_10479506
205 Ga0213873_10023105
206 Ga0213875_10052767
207 Ga0213875_10180309
208 Ga0213871_10008780
209 Ga0207688_10345905
210 Ga0207705_10143236
211 Ga0207707_10207578
212 Ga0207695_10077131
213 Ga0207657_10029640
214 Ga0207664_10083112
215 Ga0207664_10153166
216 Ga0207709_10103247
217 Ga0207698_10193070
218 Ga0265319_1021818
219 Ga0265319_1053156
220 Ga0265318_10002149
221 Ga0265318_10064080
222 Ga0265323_10017990
223 Ga0265322_10036644
224 Ga0265338_10052906
225 Ga0265320_10025324
226 Ga0265320_10087542
227 Ga0265325_10008998
228 Ga0265325_10021837
229 Ga0265340_10015419
230 Ga0265327_10080239
231 Ga0265316_10029887
232 Ga0265313_10139544
233 Ga0316579_10045420
234 Ga0265314_10021653
235 Ga0316576_10005913
236 Ga0316576_10228907
237 Ga0307406_10272279
238 Ga0307416_100108942
239 Ga0307411_10522025
240 Ga0316593_10005780
241 Ga0316593_10029228
242 Ga0316592_1000035
243 Ga0316588_1000902
244 Ga0316596_1000039
245 Ga0316596_1000208
246 Ga0373943_0008573
247 Ga0316574_0310029
248 Ga0373933_0492796
249 Ga0373947_0023692
250 Ga0373937_0494753
251 Ga0316582_0031763
252 Ga0316584_0107713
253 Ga0373925_0045248
254 Ga0395899_0171062
255 Ga0395900_0214320
256 Ga0395898_0434649
257 Ga0395905_0070276
258 Ga0436364_0754428
259 Ga0436364_0806322
260 Ga0395901_0197615
261 Ga0395901_0310501
262 Ga0395901_0657485
263 Ga0400484_20003
264 Ga0400486_21368
265 Ga0400487_04420
266 Ga0400487_50276
267 Ga0436360_0163442
268 Ga0436360_0308283
269 Ga0436360_0327488
270 Ga0436360_0426765
271 Ga0436360_0910367
272 Ga0436361_0093054
273 Ga0436361_0230525
274 Ga0436361_0560336
275 Ga0436363_1009094
276 Ga0436362_0364328
277 Ga0436362_0372347
278 Ga0436362_0389041
279 Ga0451577_0001113
280 Ga0466966_0183448
281 Ga0466968_0043063
282 Ga0451576_0044291
283 Ga0451576_0110347
284 Ga0451576_0119320
285 Ga0495592_0155207
286 Ga0495651_0141141
287 Ga0495580_0219492
288 Ga0495608_0229255
289 Ga0495620_0186030
290 Ga0495630_0057432
291 Ga0495630_0058643
292 Ga0495657_0301631
293 Ga0495658_0004414
294 Ga0495658_0071483
295 Ga0495614_0111985
296 Ga0495615_0011418
297 Ga0496110_0442354
298 Ga0496121_0004571
299 Ga0496122_0007916
300 Ga0501309_014376
301 Ga0501036_0038994
302 Ga0501036_0209134
303 Ga0501038_0523573
304 Ga0501039_0031891
305 Ga0501039_0046606
306 Ga0501040_0429394
307 Ga0501043_0179208
308 Ga0501072_0076996
309 Ga0501076_0052178
310 Ga0501081_0008928
311 Ga0501044_0105348
312 nmdc:mga0yw44_128906_c1
313 nmdc:mga0yw44_361818_c1
314 nmdc:mga05p37_719539_c1
315 nmdc:mga0qj67_14216_c1
316 nmdc:mga06r32_208706_c1
317 nmdc:mga06r32_4753_c1
318 Ga0495619_0090177
319 Ga0500614_010984
320 Ga0590075_027813
321 Ga0501082_0189151
322 Ga0466962_0063338

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00181

Ribosomal_L2

Ribosomal Proteins L2, RNA binding domain

44

120

0.99

PF03947

Ribosomal_L2_C

Ribosomal Proteins L2, C-terminal domain

127

252

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
1c04-assembly1.cif.gz_A identification of known protein and rna structures in a 5 a map of the large ribosomal subunit from haloarcula marismortui 0.981 62 193
1c04-assembly1.cif.gz_A identification of known protein and rna structures in a 5 a map of the large ribosomal subunit from haloarcula marismortui 0.9526 62 193
8c91-assembly1.cif.gz_C cryo-em captures early ribosome assembly in action 0.952 62 200
3iy9-assembly1.cif.gz_B leishmania tarentolae mitochondrial large ribosomal subunit model 0.9161 78 209
3iy9-assembly1.cif.gz_B leishmania tarentolae mitochondrial large ribosomal subunit model 0.8844 78 209
ID Description Score Start End Superfamily
1rl2B01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 1.004 62 113 2.40.50.140
af_Q6R9C6_19_86_2.30.30.30 Mainly Beta;Roll;SH3 type barrels.; 0.999 131 196 2.30.30.30
af_E7F8R3_156_236_2.30.30.30 Mainly Beta;Roll;SH3 type barrels.; 0.9907 125 194 2.30.30.30
af_Q5A7P6_207_283_2.30.30.30 Mainly Beta;Roll;SH3 type barrels.; 0.9888 124 194 2.30.30.30
af_P92812_354_429_2.30.30.30 Mainly Beta;Roll;SH3 type barrels.; 0.9841 125 194 2.30.30.30
ID Description Score Start End GO Terms
AF-A0A0F2I9X1-F1-model_v4 50S ribosomal protein L2 0.9929 62 187 GO:0002181
GO:0003723
GO:0003735
GO:0015934
GO:0016740
AF-R4I6R4-F1-model_v4 Ribosomal protein L2 0.9921 74 197 GO:0003723
GO:0003735
GO:0005762
GO:0009507
GO:0016740
GO:0032543
AF-D8KXK9-F1-model_v4 Ribosomal protein L2 0.9861 74 196 GO:0003723
GO:0003735
GO:0005762
GO:0009507
GO:0032543
AF-A0A0F2I9X1-F1-model_v4 50S ribosomal protein L2 0.9699 62 187 GO:0002181
GO:0003723
GO:0003735
GO:0015934
GO:0016740
AF-D8KXK9-F1-model_v4 Ribosomal protein L2 0.9628 74 196 GO:0003723
GO:0003735
GO:0005762
GO:0009507
GO:0032543

Map