F236255
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 161 | 128 | 158 | 433 |
Family's Representative Sequence
| Representative Sequence | 3300005353|Ga0070669_100105606|Ga0070669_1001056062 |
| Length | 467 |
| Sequence | MMNIRRWHLVLAIAALSACTGVAKLPLQATVGPDPALPPPQRSLIPTVNVADATAWQPNERPVAAPGLAVAKFADGLQHPRWLYVLPNGDVLVAETDAPPKPEDGTGLRGFLMKQFMKKAGSGRPSANRITLLRDTNGDGTADTRTTFVDGLNSPFGMVLVGDSFFVAATDALLRFPYSKGETHITASPTKIVDLPGGPINHHWTKNVIASPDGSKLYVTVGSNSNAGENGIEKEAGRAAIWEVDVKTGQHRIFASGLRNPNGMAWESQTGALWTSVNERDELGDDLVPDYLTSVRDGGFYGWPYSYYGSHMDPRVEPQRPDLVAKALVPDYALGAHTASLGLTAADGAALPPDYRQGMFVGRHGSWNRRPRSGYDVIFVPFANGKPSGAPLPVLSGFVTSNGDARGRPVGLAIDRHGALLVADDVGNTVWRVTAVVSNNTGQTAAVHTAPVERDTRSPARPGTVAQ |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2643221646 | Pelomonas sp. Root1237 | Isolate | Unclassified |
| 2 | 2842775625 | Roseomonas sp. R-71825 | Isolate | Unclassified |
| 3 | 2857553236 | Duganella sp. R-74557 | Isolate | Unclassified |
| 4 | 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 6 | 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005343 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG | Metagenome | Rhizosphere |
| 8 | 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Metagenome | Rhizosphere |
| 12 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 17 | 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Metagenome | Rhizosphere |
| 18 | 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Metagenome | Rhizosphere |
| 19 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 20 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 21 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 22 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 23 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 24 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 25 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 26 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 27 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 28 | 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Metagenome | Rhizosphere |
| 29 | 3300006178 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 | Metagenome | Endosphere |
| 30 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 31 | 3300006846 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Metagenome | Rhizosphere |
| 32 | 3300006914 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Metagenome | Rhizosphere |
| 33 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 34 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 35 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 36 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 37 | 3300009979 | Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG | Metagenome | Rhizosphere |
| 38 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 39 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 40 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 41 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 42 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 43 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 44 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 45 | 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 46 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 47 | 3300022467 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 48 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 51 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300027717 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300027876 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 72 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300031240 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG | Metagenome | Rhizosphere |
| 75 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 76 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 77 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 78 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 79 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 80 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 81 | 3300035085 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 | Metagenome | Rhizosphere |
| 82 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 83 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 84 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 85 | 3300041458 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG | Metagenome | Rhizoplane |
| 86 | 3300041486 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG | Metagenome | Rhizoplane |
| 87 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 88 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 89 | 3300046453 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere | Metagenome | Rhizosphere |
| 90 | 3300046523 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere | Metagenome | Rhizosphere |
| 91 | 3300046810 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere | Metagenome | Rhizosphere |
| 92 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 93 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 94 | 3300049459 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere | Metagenome | Rhizosphere |
| 95 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 96 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 97 | 3300049576 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 98 | 3300049577 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 99 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 100 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 101 | 3300049583 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 | Metagenome | Rhizosphere |
| 102 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 103 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 104 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 105 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 106 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 107 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 108 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 109 | 3300049593 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 | Metagenome | Rhizosphere |
| 110 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 111 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 112 | 3300049743 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 | Metagenome | Rhizosphere |
| 113 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 114 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 115 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 116 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 117 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 118 | 3300050509 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation | Metagenome | Rhizosphere |
| 119 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 120 | 3300050513 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation | Metagenome | Rhizosphere |
| 121 | 3300050514 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation | Metagenome | Rhizosphere |
| 122 | 3300053104 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere | Metagenome | Endosphere |
| 123 | 3300053119 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere | Metagenome | Endosphere |
| 124 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 125 | 3300053178 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere | Metagenome | Endosphere |
| 126 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 127 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 128 | 3300061734 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) | Metagenome | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 96.89 |
| Metatranscriptomes | 1.24 |
| Isolates | 1.86 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 4.35 |
| Nodule | 0 |
| Rhizoplane | 2.48 |
| Rhizosphere | 88.82 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 4.35 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0070676_10125399 | 3300005328 | Bacteria | 1617 |
| 2 | Ga0070683_100072937 | 3300005329 | Bacteria | 3205 |
| 3 | Ga0070666_10000150 | 3300005335 | Bacteria | 47746 |
| 4 | Ga0070687_100025829 | 3300005343 | Bacteria | 2822 |
| 5 | Ga0070669_100105606 | 3300005353 | Bacteria | 2131 |
| 6 | Ga0070671_100047481 | 3300005355 | Bacteria | 3571 |
| 7 | Ga0070671_100195562 | 3300005355 | Bacteria | 1714 |
| 8 | Ga0070674_100145418 | 3300005356 | Bacteria | 1784 |
| 9 | Ga0070709_10000631 | 3300005434 | Bacteria | 20142 |
| 10 | Ga0070714_100022967 | 3300005435 | Bacteria | 5119 |
| 11 | Ga0070711_100067699 | 3300005439 | Bacteria | 2506 |
| 12 | Ga0070663_100060040 | 3300005455 | Bacteria | 2734 |
| 13 | Ga0070662_100150776 | 3300005457 | Bacteria | 1810 |
| 14 | Ga0070681_10085983 | 3300005458 | Bacteria | 3097 |
| 15 | Ga0068867_100012295 | 3300005459 | Bacteria | 6054 |
| 16 | Ga0070685_10003051 | 3300005466 | Bacteria | 8538 |
| 17 | Ga0070679_100012419 | 3300005530 | Bacteria | 8138 |
| 18 | Ga0070684_100022249 | 3300005535 | Bacteria | 5284 |
| 19 | Ga0068853_100004819 | 3300005539 | Bacteria | 10492 |
| 20 | Ga0070672_100180291 | 3300005543 | Bacteria | 1760 |
| 21 | Ga0070665_100001043 | 3300005548 | Bacteria | 34717 |
| 22 | Ga0070664_100035312 | 3300005564 | Bacteria | 4196 |
| 23 | Ga0068856_100000185 | 3300005614 | Bacteria | 64973 |
| 24 | Ga0068856_100005957 | 3300005614 | Bacteria | 11999 |
| 25 | Ga0068852_100011741 | 3300005616 | Bacteria | 6613 |
| 26 | Ga0075364_10029829 | 3300006051 | Bacteria | 3499 |
| 27 | Ga0070712_100000408 | 3300006175 | Bacteria | 24528 |
| 28 | Ga0070712_100004070 | 3300006175 | Bacteria | 8977 |
| 29 | Ga0075367_10007550 | 3300006178 | Bacteria | 5578 |
| 30 | Ga0075428_100131951 | 3300006844 | Bacteria | 2717 |
| 31 | Ga0075430_100111418 | 3300006846 | Bacteria | 2282 |
| 32 | Ga0075436_100000023 | 3300006914 | Bacteria | 116796 |
| 33 | Ga0105241_10022547 | 3300009174 | Bacteria | 4665 |
| 34 | Ga0105241_10077070 | 3300009174 | Bacteria | 2602 |
| 35 | Ga0105248_10001419 | 3300009177 | Bacteria | 26778 |
| 36 | Ga0105248_10008721 | 3300009177 | Bacteria | 11137 |
| 37 | Ga0105237_10024098 | 3300009545 | Bacteria | 6226 |
| 38 | Ga0105238_10000026 | 3300009551 | Bacteria | 195584 |
| 39 | Ga0105238_10019871 | 3300009551 | Bacteria | 6837 |
| 40 | Ga0105032_100592 | 3300009979 | Bacteria | 3577 |
| 41 | Ga0105239_10017874 | 3300010375 | Bacteria | 7842 |
| 42 | Ga0105239_10036027 | 3300010375 | Bacteria | 5432 |
| 43 | Ga0105239_10036351 | 3300010375 | Bacteria | 5408 |
| 44 | Ga0157373_10025211 | 3300013100 | Bacteria | 4304 |
| 45 | Ga0157373_10027307 | 3300013100 | Bacteria | 4117 |
| 46 | Ga0157373_10154467 | 3300013100 | Bacteria | 1615 |
| 47 | Ga0157369_10000032 | 3300013105 | Bacteria | 202272 |
| 48 | Ga0157378_10036537 | 3300013297 | Bacteria | 4347 |
| 49 | Ga0157372_10011893 | 3300013307 | Bacteria | 9273 |
| 50 | Ga0157372_10054385 | 3300013307 | Bacteria | 4465 |
| 51 | Ga0157372_10067140 | 3300013307 | Bacteria | 4030 |
| 52 | Ga0157380_10104825 | 3300014326 | Bacteria | 2363 |
| 53 | Ga0157379_10003311 | 3300014968 | Bacteria | 13644 |
| 54 | Ga0157379_10049637 | 3300014968 | Bacteria | 3747 |
| 55 | Ga0206353_10204651 | 3300020082 | Bacteria | 4466 |
| 56 | Ga0213876_10073202 | 3300021384 | Bacteria | 1809 |
| 57 | Ga0224712_10008950 | 3300022467 | Bacteria | 2994 |
| 58 | Ga0207647_10003354 | 3300025904 | Bacteria | 12013 |
| 59 | Ga0207645_10012606 | 3300025907 | Bacteria | 5732 |
| 60 | Ga0207654_10013122 | 3300025911 | Bacteria | 4257 |
| 61 | Ga0207707_10024952 | 3300025912 | Bacteria | 5231 |
| 62 | Ga0207695_10001566 | 3300025913 | Bacteria | 37361 |
| 63 | Ga0207693_10001052 | 3300025915 | Bacteria | 24678 |
| 64 | Ga0207657_10026829 | 3300025919 | Bacteria | 5285 |
| 65 | Ga0207694_10000034 | 3300025924 | Bacteria | 197650 |
| 66 | Ga0207694_10004744 | 3300025924 | Bacteria | 10571 |
| 67 | Ga0207700_10000010 | 3300025928 | Bacteria | 298473 |
| 68 | Ga0207700_10204058 | 3300025928 | Bacteria | 1667 |
| 69 | Ga0207664_10018569 | 3300025929 | Bacteria | 5124 |
| 70 | Ga0207644_10085774 | 3300025931 | Bacteria | 2336 |
| 71 | Ga0207691_10020831 | 3300025940 | Bacteria | 6195 |
| 72 | Ga0207691_10029392 | 3300025940 | Bacteria | 5141 |
| 73 | Ga0207661_10195304 | 3300025944 | Bacteria | 1776 |
| 74 | Ga0207639_10011286 | 3300026041 | Bacteria | 6199 |
| 75 | Ga0207678_10097340 | 3300026067 | Bacteria | 2515 |
| 76 | Ga0207708_10004246 | 3300026075 | Bacteria | 10555 |
| 77 | Ga0207702_10000174 | 3300026078 | Bacteria | 77455 |
| 78 | Ga0207648_10019047 | 3300026089 | Bacteria | 6197 |
| 79 | Ga0207676_10090442 | 3300026095 | Bacteria | 2512 |
| 80 | Ga0207674_10040009 | 3300026116 | Bacteria | 4858 |
| 81 | Ga0207674_10220487 | 3300026116 | Bacteria | 1845 |
| 82 | Ga0207698_10193729 | 3300026142 | Bacteria | 1813 |
| 83 | Ga0209998_10006645 | 3300027717 | Bacteria | 2401 |
| 84 | Ga0209974_10005511 | 3300027876 | Bacteria | 4449 |
| 85 | Ga0207428_10005259 | 3300027907 | Bacteria | 12090 |
| 86 | Ga0268266_10000348 | 3300028379 | Bacteria | 72116 |
| 87 | Ga0268265_10067028 | 3300028380 | Bacteria | 2777 |
| 88 | Ga0265320_10000331 | 3300031240 | Bacteria | 38699 |
| 89 | Ga0307516_10018161 | 3300031730 | Bacteria | 7314 |
| 90 | Ga0307405_10002744 | 3300031731 | Bacteria | 7891 |
| 91 | Ga0307410_10001856 | 3300031852 | Bacteria | 9853 |
| 92 | Ga0307409_100000595 | 3300031995 | Bacteria | 15778 |
| 93 | Ga0307416_100029011 | 3300032002 | Bacteria | 4126 |
| 94 | Ga0307510_10003705 | 3300033180 | Bacteria | 17861 |
| 95 | Ga0373929_0000003 | 3300035085 | Bacteria | 575058 |
| 96 | Ga0373937_0008822 | 3300036401 | Bacteria | 8747 |
| 97 | Ga0395898_0167333 | 3300037466 | Bacteria | 2102 |
| 98 | Ga0436365_0257345 | 3300039437 | Bacteria | 14502 |
| 99 | Ga0451798_0098720 | 3300041458 | Bacteria | 1536 |
| 100 | Ga0451807_0315897 | 3300041486 | Bacteria | 2373 |
| 101 | Ga0451577_0003955 | 3300042876 | Bacteria | 15990 |
| 102 | Ga0451577_0109670 | 3300042876 | Bacteria | 2468 |
| 103 | Ga0453684_0336258 | 3300044712 | Bacteria | 1706 |
| 104 | Ga0495627_000065 | 3300046453 | Bacteria | 132414 |
| 105 | Ga0495644_0046003 | 3300046523 | Bacteria | 1640 |
| 106 | Ga0495660_0000207 | 3300046810 | Bacteria | 61056 |
| 107 | Ga0496105_0234839 | 3300048908 | Bacteria | 1489 |
| 108 | Ga0496106_0116083 | 3300048909 | Bacteria | 2088 |
| 109 | Ga0495678_000001 | 3300049459 | Bacteria | 1060340 |
| 110 | Ga0501036_0043957 | 3300049572 | Bacteria | 3783 |
| 111 | Ga0501037_0074597 | 3300049573 | Bacteria | 2465 |
| 112 | Ga0501040_0009335 | 3300049576 | Bacteria | 6390 |
| 113 | Ga0501041_0001663 | 3300049577 | Bacteria | 12444 |
| 114 | Ga0501042_0030118 | 3300049578 | Bacteria | 3832 |
| 115 | Ga0501047_0040871 | 3300049581 | Bacteria | 4484 |
| 116 | Ga0501047_0047692 | 3300049581 | Bacteria | 4138 |
| 117 | Ga0501047_0299543 | 3300049581 | Bacteria | 1451 |
| 118 | Ga0501067_0022822 | 3300049583 | Bacteria | 3464 |
| 119 | Ga0501070_0006847 | 3300049586 | Bacteria | 9699 |
| 120 | Ga0501070_0123624 | 3300049586 | Bacteria | 2138 |
| 121 | Ga0501071_0003105 | 3300049587 | Bacteria | 10310 |
| 122 | Ga0501072_0012367 | 3300049588 | Bacteria | 6522 |
| 123 | Ga0501072_0014768 | 3300049588 | Bacteria | 5987 |
| 124 | Ga0501073_0009568 | 3300049589 | Bacteria | 7147 |
| 125 | Ga0501073_0041111 | 3300049589 | Bacteria | 3267 |
| 126 | Ga0501074_0000149 | 3300049590 | Bacteria | 36207 |
| 127 | Ga0501075_0000235 | 3300049591 | Bacteria | 29720 |
| 128 | Ga0501075_0003692 | 3300049591 | Bacteria | 10276 |
| 129 | Ga0501076_0044392 | 3300049592 | Bacteria | 3505 |
| 130 | Ga0501077_0000114 | 3300049593 | Bacteria | 42581 |
| 131 | Ga0501077_0136742 | 3300049593 | Bacteria | 1554 |
| 132 | Ga0501079_0163566 | 3300049741 | Bacteria | 1735 |
| 133 | Ga0501080_0002555 | 3300049742 | Bacteria | 15933 |
| 134 | Ga0501080_0010153 | 3300049742 | Bacteria | 8610 |
| 135 | Ga0501080_0010724 | 3300049742 | Bacteria | 8382 |
| 136 | Ga0501080_0035267 | 3300049742 | Bacteria | 4669 |
| 137 | Ga0501080_0178153 | 3300049742 | Bacteria | 1957 |
| 138 | Ga0501081_0005276 | 3300049743 | Bacteria | 8332 |
| 139 | Ga0501083_0008720 | 3300049744 | Bacteria | 7153 |
| 140 | Ga0501083_0071606 | 3300049744 | Bacteria | 2305 |
| 141 | Ga0501045_0007082 | 3300049824 | Bacteria | 7774 |
| 142 | nmdc:mga0k408_726_c1 | 3300050493 | Bacteria | 18066 |
| 143 | nmdc:mga05p37_133554_c1 | 3300050507 | Bacteria | 3044 |
| 144 | nmdc:mga09592_168226_c1 | 3300050508 | Bacteria | 1895 |
| 145 | nmdc:mga0qj67_78282_c1 | 3300050509 | Bacteria | 2646 |
| 146 | nmdc:mga08y16_172460_c1 | 3300050511 | Bacteria | 2247 |
| 147 | nmdc:mga08y16_6308_c1 | 3300050511 | Bacteria | 12435 |
| 148 | nmdc:mga0rr50_91974_c1 | 3300050513 | Bacteria | 2364 |
| 149 | nmdc:mga08x19_50_c1 | 3300050514 | Bacteria | 129410 |
| 150 | Ga0500556_0000442 | 3300053104 | Bacteria | 29531 |
| 151 | Ga0500595_008678 | 3300053119 | Bacteria | 4143 |
| 152 | Ga0500616_0012787 | 3300053153 | Bacteria | 4899 |
| 153 | Ga0500637_0151180 | 3300053178 | Bacteria | 1341 |
| 154 | Ga0501084_0011775 | 3300054114 | Bacteria | 7241 |
| 155 | Ga0501084_0200185 | 3300054114 | Bacteria | 1685 |
| 156 | Ga0501082_0000157 | 3300060353 | Bacteria | 57772 |
| 157 | Ga0501082_0041555 | 3300060353 | Bacteria | 3964 |
| 158 | Ga0530510_0000234 | 3300061734 | Bacteria | 34829 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300050508 | nmdc:mga09592_168226_c1 | nmdc:mga09592_168226_c1_77_1177 | 366 |
| 2 | 3300013297 | Ga0157378_10036537 | Ga0157378_100365371 | 371 |
| 3 | 3300053178 | Ga0500637_0151180 | Ga0500637_0151180_92_1234 | 380 |
| 4 | 3300048908 | Ga0496105_0234839 | Ga0496105_0234839_235_1434 | 385 |
| 5 | 3300049581 | Ga0501047_0047692 | Ga0501047_0047692_2883_4064 | 386 |
| 6 | 3300049583 | Ga0501067_0022822 | Ga0501067_0022822_1054_2229 | 391 |
| 7 | 3300049591 | Ga0501075_0000235 | Ga0501075_0000235_25714_26889 | 391 |
| 8 | 3300049593 | Ga0501077_0000114 | Ga0501077_0000114_17021_18196 | 391 |
| 9 | 3300049742 | Ga0501080_0178153 | Ga0501080_0178153_336_1511 | 391 |
| 10 | 3300060353 | Ga0501082_0000157 | Ga0501082_0000157_36268_37443 | 391 |
| 11 | 3300044712 | Ga0453684_0336258 | Ga0453684_0336258_420_1685 | 402 |
| 12 | 3300005455 | Ga0070663_100060040 | Ga0070663_1000600403 | 407 |
| 13 | 3300006051 | Ga0075364_10029829 | Ga0075364_100298293 | 407 |
| 14 | 3300006178 | Ga0075367_10007550 | Ga0075367_100075503 | 407 |
| 15 | 3300009545 | Ga0105237_10024098 | Ga0105237_100240987 | 407 |
| 16 | 3300026067 | Ga0207678_10097340 | Ga0207678_100973403 | 407 |
| 17 | 3300050493 | nmdc:mga0k408_726_c1 | nmdc:mga0k408_726_c1_5586_6902 | 407 |
| 18 | 3300020082 | Ga0206353_10204651 | Ga0206353_102046511 | 414 |
| 19 | 3300042876 | Ga0451577_0003955 | Ga0451577_0003955_5289_6596 | 416 |
| 20 | 3300049581 | Ga0501047_0040871 | Ga0501047_0040871_2916_4238 | 416 |
| 21 | 3300049586 | Ga0501070_0006847 | Ga0501070_0006847_7139_8461 | 416 |
| 22 | 3300049588 | Ga0501072_0014768 | Ga0501072_0014768_957_2279 | 416 |
| 23 | 3300049589 | Ga0501073_0009568 | Ga0501073_0009568_5792_7114 | 416 |
| 24 | 3300049742 | Ga0501080_0035267 | Ga0501080_0035267_3089_4411 | 416 |
| 25 | 3300049744 | Ga0501083_0071606 | Ga0501083_0071606_744_2066 | 416 |
| 26 | 3300054114 | Ga0501084_0200185 | Ga0501084_0200185_21_1298 | 416 |
| 27 | 3300006175 | Ga0070712_100000408 | Ga0070712_1000004082 | 418 |
| 28 | 3300025928 | Ga0207700_10204058 | Ga0207700_102040582 | 418 |
| 29 | 3300042876 | Ga0451577_0109670 | Ga0451577_0109670_190_1503 | 418 |
| 30 | 3300013307 | Ga0157372_10011893 | Ga0157372_100118933 | 419 |
| 31 | 3300049589 | Ga0501073_0041111 | Ga0501073_0041111_256_1593 | 420 |
| 32 | 3300010375 | Ga0105239_10036027 | Ga0105239_100360272 | 424 |
| 33 | 3300009174 | Ga0105241_10022547 | Ga0105241_100225474 | 426 |
| 34 | 3300010375 | Ga0105239_10017874 | Ga0105239_100178749 | 426 |
| 35 | 3300013105 | Ga0157369_10000032 | Ga0157369_10000032168 | 426 |
| 36 | 3300005355 | Ga0070671_100047481 | Ga0070671_1000474813 | 427 |
| 37 | 3300005458 | Ga0070681_10085983 | Ga0070681_100859831 | 427 |
| 38 | 3300005530 | Ga0070679_100012419 | Ga0070679_1000124193 | 427 |
| 39 | 3300005539 | Ga0068853_100004819 | Ga0068853_1000048196 | 427 |
| 40 | 3300009177 | Ga0105248_10001419 | Ga0105248_1000141922 | 427 |
| 41 | 3300013100 | Ga0157373_10025211 | Ga0157373_100252112 | 427 |
| 42 | 3300025912 | Ga0207707_10024952 | Ga0207707_100249523 | 427 |
| 43 | 3300026041 | Ga0207639_10011286 | Ga0207639_100112865 | 427 |
| 44 | 3300026095 | Ga0207676_10090442 | Ga0207676_100904421 | 427 |
| 45 | 3300033180 | Ga0307510_10003705 | Ga0307510_1000370512 | 427 |
| 46 | 3300014968 | Ga0157379_10003311 | Ga0157379_1000331117 | 428 |
| 47 | 3300005356 | Ga0070674_100145418 | Ga0070674_1001454181 | 429 |
| 48 | 3300010375 | Ga0105239_10036351 | Ga0105239_100363513 | 429 |
| 49 | 3300028380 | Ga0268265_10067028 | Ga0268265_100670283 | 429 |
| 50 | 3300049590 | Ga0501074_0000149 | Ga0501074_0000149_21031_22365 | 429 |
| 51 | 3300049742 | Ga0501080_0002555 | Ga0501080_0002555_4421_5755 | 429 |
| 52 | 3300009551 | Ga0105238_10000026 | Ga0105238_1000002660 | 430 |
| 53 | 3300049744 | Ga0501083_0008720 | Ga0501083_0008720_4528_5871 | 430 |
| 54 | iso_pu_bacteria | 2643221646 | 2644258795 | 430 |
| 55 | 3300022467 | Ga0224712_10008950 | Ga0224712_100089501 | 431 |
| 56 | 3300025911 | Ga0207654_10013122 | Ga0207654_100131222 | 431 |
| 57 | 3300025913 | Ga0207695_10001566 | Ga0207695_1000156631 | 431 |
| 58 | 3300025924 | Ga0207694_10004744 | Ga0207694_1000474416 | 431 |
| 59 | 3300049572 | Ga0501036_0043957 | Ga0501036_0043957_72_1376 | 431 |
| 60 | 3300049573 | Ga0501037_0074597 | Ga0501037_0074597_1101_2405 | 431 |
| 61 | 3300049576 | Ga0501040_0009335 | Ga0501040_0009335_2148_3452 | 431 |
| 62 | 3300049577 | Ga0501041_0001663 | Ga0501041_0001663_8243_9547 | 431 |
| 63 | 3300049578 | Ga0501042_0030118 | Ga0501042_0030118_485_1789 | 431 |
| 64 | 3300049587 | Ga0501071_0003105 | Ga0501071_0003105_7334_8638 | 431 |
| 65 | 3300049588 | Ga0501072_0012367 | Ga0501072_0012367_1948_3252 | 431 |
| 66 | 3300049591 | Ga0501075_0003692 | Ga0501075_0003692_842_2146 | 431 |
| 67 | 3300049592 | Ga0501076_0044392 | Ga0501076_0044392_1113_2417 | 431 |
| 68 | 3300049593 | Ga0501077_0136742 | Ga0501077_0136742_43_1347 | 431 |
| 69 | 3300049741 | Ga0501079_0163566 | Ga0501079_0163566_218_1522 | 431 |
| 70 | 3300049742 | Ga0501080_0010153 | Ga0501080_0010153_1190_2494 | 431 |
| 71 | 3300049742 | Ga0501080_0010724 | Ga0501080_0010724_4391_5692 | 431 |
| 72 | 3300049743 | Ga0501081_0005276 | Ga0501081_0005276_6650_7954 | 431 |
| 73 | 3300049824 | Ga0501045_0007082 | Ga0501045_0007082_1452_2756 | 431 |
| 74 | 3300053153 | Ga0500616_0012787 | Ga0500616_0012787_1649_2962 | 431 |
| 75 | 3300054114 | Ga0501084_0011775 | Ga0501084_0011775_659_1963 | 431 |
| 76 | 3300060353 | Ga0501082_0041555 | Ga0501082_0041555_2206_3510 | 431 |
| 77 | 3300061734 | Ga0530510_0000234 | Ga0530510_0000234_328_1632 | 431 |
| 78 | 3300005343 | Ga0070687_100025829 | Ga0070687_1000258292 | 432 |
| 79 | 3300005543 | Ga0070672_100180291 | Ga0070672_1001802912 | 432 |
| 80 | 3300006844 | Ga0075428_100131951 | Ga0075428_1001319512 | 432 |
| 81 | 3300006846 | Ga0075430_100111418 | Ga0075430_1001114183 | 432 |
| 82 | 3300009551 | Ga0105238_10019871 | Ga0105238_100198717 | 432 |
| 83 | 3300013307 | Ga0157372_10054385 | Ga0157372_100543853 | 432 |
| 84 | 3300014326 | Ga0157380_10104825 | Ga0157380_101048252 | 432 |
| 85 | 3300026075 | Ga0207708_10004246 | Ga0207708_100042466 | 432 |
| 86 | 3300050509 | nmdc:mga0qj67_78282_c1 | nmdc:mga0qj67_78282_c1_674_1996 | 432 |
| 87 | 3300050511 | nmdc:mga08y16_172460_c1 | nmdc:mga08y16_172460_c1_546_1868 | 432 |
| 88 | 3300005355 | Ga0070671_100195562 | Ga0070671_1001955622 | 433 |
| 89 | 3300005434 | Ga0070709_10000631 | Ga0070709_100006313 | 433 |
| 90 | 3300005435 | Ga0070714_100022967 | Ga0070714_1000229673 | 433 |
| 91 | 3300005439 | Ga0070711_100067699 | Ga0070711_1000676993 | 433 |
| 92 | 3300005614 | Ga0068856_100000185 | Ga0068856_10000018544 | 433 |
| 93 | 3300006175 | Ga0070712_100004070 | Ga0070712_1000040707 | 433 |
| 94 | 3300006914 | Ga0075436_100000023 | Ga0075436_1000000236 | 433 |
| 95 | 3300014968 | Ga0157379_10049637 | Ga0157379_100496374 | 433 |
| 96 | 3300025915 | Ga0207693_10001052 | Ga0207693_1000105213 | 433 |
| 97 | 3300025928 | Ga0207700_10000010 | Ga0207700_1000001029 | 433 |
| 98 | 3300025929 | Ga0207664_10018569 | Ga0207664_100185693 | 433 |
| 99 | 3300026078 | Ga0207702_10000174 | Ga0207702_1000017420 | 433 |
| 100 | 3300031240 | Ga0265320_10000331 | Ga0265320_1000033117 | 433 |
| 101 | 3300036401 | Ga0373937_0008822 | Ga0373937_0008822_2571_3881 | 433 |
| 102 | 3300050513 | nmdc:mga0rr50_91974_c1 | nmdc:mga0rr50_91974_c1_913_2223 | 433 |
| 103 | 3300050514 | nmdc:mga08x19_50_c1 | nmdc:mga08x19_50_c1_125641_126951 | 433 |
| 104 | 3300025924 | Ga0207694_10000034 | Ga0207694_1000003460 | 434 |
| 105 | 3300027907 | Ga0207428_10005259 | Ga0207428_100052599 | 434 |
| 106 | 3300037466 | Ga0395898_0167333 | Ga0395898_0167333_47_1360 | 434 |
| 107 | 3300041486 | Ga0451807_0315897 | Ga0451807_0315897_946_2277 | 434 |
| 108 | 3300050507 | nmdc:mga05p37_133554_c1 | nmdc:mga05p37_133554_c1_1218_2561 | 434 |
| 109 | 3300050511 | nmdc:mga08y16_6308_c1 | nmdc:mga08y16_6308_c1_3803_5146 | 434 |
| 110 | iso_pu_bacteria | 2842775625 | 2842777812 | 434 |
| 111 | 3300005466 | Ga0070685_10003051 | Ga0070685_100030514 | 435 |
| 112 | 3300005548 | Ga0070665_100001043 | Ga0070665_10000104314 | 435 |
| 113 | 3300028379 | Ga0268266_10000348 | Ga0268266_1000034812 | 435 |
| 114 | 3300035085 | Ga0373929_0000003 | Ga0373929_0000003_281497_282819 | 435 |
| 115 | 3300021384 | Ga0213876_10073202 | Ga0213876_100732021 | 436 |
| 116 | 3300039437 | Ga0436365_0257345 | Ga0436365_0257345_419_1732 | 436 |
| 117 | 3300049581 | Ga0501047_0299543 | Ga0501047_0299543_10_1350 | 436 |
| 118 | 3300005329 | Ga0070683_100072937 | Ga0070683_1000729374 | 437 |
| 119 | 3300005535 | Ga0070684_100022249 | Ga0070684_1000222494 | 437 |
| 120 | 3300005564 | Ga0070664_100035312 | Ga0070664_1000353124 | 437 |
| 121 | 3300005614 | Ga0068856_100005957 | Ga0068856_1000059576 | 437 |
| 122 | 3300009174 | Ga0105241_10077070 | Ga0105241_100770702 | 437 |
| 123 | 3300009979 | Ga0105032_100592 | Ga0105032_1005923 | 437 |
| 124 | 3300013100 | Ga0157373_10027307 | Ga0157373_100273074 | 437 |
| 125 | 3300025919 | Ga0207657_10026829 | Ga0207657_100268293 | 437 |
| 126 | 3300025944 | Ga0207661_10195304 | Ga0207661_101953042 | 437 |
| 127 | 3300026116 | Ga0207674_10040009 | Ga0207674_100400093 | 437 |
| 128 | 3300027717 | Ga0209998_10006645 | Ga0209998_100066452 | 437 |
| 129 | 3300027876 | Ga0209974_10005511 | Ga0209974_100055112 | 437 |
| 130 | iso_pu_bacteria | 2857553236 | 2857554951 | 437 |
| 131 | 3300005335 | Ga0070666_10000150 | Ga0070666_100001502 | 438 |
| 132 | 3300005616 | Ga0068852_100011741 | Ga0068852_1000117414 | 438 |
| 133 | 3300025904 | Ga0207647_10003354 | Ga0207647_100033543 | 438 |
| 134 | 3300053104 | Ga0500556_0000442 | Ga0500556_0000442_18746_20062 | 438 |
| 135 | 3300041458 | Ga0451798_0098720 | Ga0451798_0098720_32_1354 | 439 |
| 136 | 3300049586 | Ga0501070_0123624 | Ga0501070_0123624_425_1759 | 439 |
| 137 | 3300031730 | Ga0307516_10018161 | Ga0307516_100181615 | 440 |
| 138 | 3300046453 | Ga0495627_000065 | Ga0495627_000065_113403_114731 | 440 |
| 139 | 3300046523 | Ga0495644_0046003 | Ga0495644_0046003_56_1384 | 440 |
| 140 | 3300046810 | Ga0495660_0000207 | Ga0495660_0000207_53434_54762 | 440 |
| 141 | 3300049459 | Ga0495678_000001 | Ga0495678_000001_972233_973561 | 440 |
| 142 | 3300005459 | Ga0068867_100012295 | Ga0068867_1000122952 | 441 |
| 143 | 3300025907 | Ga0207645_10012606 | Ga0207645_100126067 | 441 |
| 144 | 3300026089 | Ga0207648_10019047 | Ga0207648_100190473 | 441 |
| 145 | 3300053119 | Ga0500595_008678 | Ga0500595_008678_828_2183 | 441 |
| 146 | 3300005353 | Ga0070669_100105606 | Ga0070669_1001056062 | 443 |
| 147 | 3300005457 | Ga0070662_100150776 | Ga0070662_1001507761 | 443 |
| 148 | 3300009177 | Ga0105248_10008721 | Ga0105248_100087217 | 443 |
| 149 | 3300025931 | Ga0207644_10085774 | Ga0207644_100857741 | 443 |
| 150 | 3300025940 | Ga0207691_10029392 | Ga0207691_100293924 | 443 |
| 151 | 3300026142 | Ga0207698_10193729 | Ga0207698_101937292 | 443 |
| 152 | 3300048909 | Ga0496106_0116083 | Ga0496106_0116083_134_1537 | 443 |
| 153 | 3300005328 | Ga0070676_10125399 | Ga0070676_101253991 | 444 |
| 154 | 3300013100 | Ga0157373_10154467 | Ga0157373_101544671 | 444 |
| 155 | 3300013307 | Ga0157372_10067140 | Ga0157372_100671404 | 444 |
| 156 | 3300025940 | Ga0207691_10020831 | Ga0207691_100208311 | 444 |
| 157 | 3300026116 | Ga0207674_10220487 | Ga0207674_102204872 | 444 |
| 158 | 3300031731 | Ga0307405_10002744 | Ga0307405_100027442 | 444 |
| 159 | 3300031852 | Ga0307410_10001856 | Ga0307410_100018562 | 444 |
| 160 | 3300031995 | Ga0307409_100000595 | Ga0307409_1000005957 | 444 |
| 161 | 3300032002 | Ga0307416_100029011 | Ga0307416_1000290113 | 444 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3a9h-assembly1.cif.gz_A | crystal structure of pqq-dependent sugar dehydrogenase holo-form | 0.7629 | 67 | 435 |
| 6i1q-assembly1.cif.gz_A | iodide structure of trichoderma reesei carbohydrate-active enzymes family aa12 | 0.7513 | 49 | 436 |
| 3a9h-assembly1.cif.gz_A | crystal structure of pqq-dependent sugar dehydrogenase holo-form | 0.7502 | 67 | 435 |
| 7cdy-assembly2.cif.gz_B | crystal structure of glucose dehydrogenase | 0.7382 | 69 | 436 |
| 7cdy-assembly2.cif.gz_B | crystal structure of glucose dehydrogenase | 0.7342 | 69 | 436 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 3a9gA00 | Mainly Beta;6 Propeller;Neuraminidase;TolB, C-terminal domain | 0.7676 | 67 | 435 | 2.120.10.30 |
| af_I6Y293_69_358_2.120.10.30 | Mainly Beta;6 Propeller;Neuraminidase;TolB, C-terminal domain | 0.7624 | 73 | 422 | 2.120.10.30 |
| 3a9gA00 | Mainly Beta;6 Propeller;Neuraminidase;TolB, C-terminal domain | 0.7548 | 67 | 435 | 2.120.10.30 |
| af_Q8K450_481_639_2.120.10.30 | Mainly Beta;6 Propeller;Neuraminidase;TolB, C-terminal domain | 0.7309 | 73 | 277 | 2.120.10.30 |
| 2ismB00 | Mainly Beta;6 Propeller;Neuraminidase;TolB, C-terminal domain | 0.7192 | 67 | 433 | 2.120.10.30 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A4Q6FWR2-F1-model_v4 | Sorbosone dehydrogenase family protein | 0.9837 | 346 | 437 |
|
| AF-A0A480AU21-F1-model_v4 | Glucose/Sorbosone dehydrogenase domain-containing protein | 0.9826 | 289 | 437 |
|
| AF-A0A528NVY6-F1-model_v4 | deleted | 0.9822 | 290 | 410 |
|
| AF-A0A1I3AN64-F1-model_v4 | Glucose/Sorbosone dehydrogenase domain-containing protein | 0.9815 | 19 | 433 |
|
| AF-A0A2R7L948-F1-model_v4 | deleted | 0.9804 | 40 | 437 |
|
Predicted Structure (AlphaFold2)
Powered by PDBe Molstar