F233788

General Info

Members Datasets Scaffolds Average Seq Length
160 106 320 274

Family's Representative Sequence

Representative Sequence 3300005334|Ga0068869_100055232|Ga0068869_1000552322
Length 288
Sequence VMCGPGLTRSGPTHEPNVINDTELDELVRLAIDGDSAALDLVVRHLQANIYGLALRMLWNREDAEDATQEILVRIVTRLSQFDFRSRLQTWAYRVAVNYVLDVKKSAVERLNLSFDRFADSLTTGLDVGVTSDAERSVLVEEVKVGCTLAMLQCLDRPHRMAYVLGELMELSGLDASEVLEISPDLFRKRLQHARAAVLSFTKAYCGLASDSAPCRCNRQVAGALQDGRVNSHQLNFAGTRSSFEETRALVRQVDEARWALEVHRTSHPKASSIDFARRLLDTIGGQE

Samples

Sample ID Description Type Environment
1 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
13 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
18 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
26 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
27 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
28 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
29 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
30 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
32 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
33 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
34 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
35 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
36 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
37 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
38 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
46 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
47 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
61 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
63 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
65 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
66 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
67 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
68 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
69 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
70 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
71 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
72 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
73 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
74 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
75 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
76 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
77 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
78 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
79 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
80 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
81 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
82 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
86 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
87 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
88 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
89 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
90 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
91 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
92 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
93 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
94 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
95 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
96 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
97 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
98 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
99 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
100 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
101 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
102 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
103 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
104 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
105 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
106 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.5
Nodule 0
Rhizoplane 0.62
Rhizosphere 90.62
Stem 0
Stem Tuber 0
Unclassified 18.75

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068869_100055232 3300005334 Bacteria 2894
2 rootH1_10035864 3300003323 Unclassified 3143
3 rootH1_10136644 3300003323 Unclassified 1088
4 Ga0065715_10131252 3300005293 Bacteria 2009
5 Ga0065715_10192073 3300005293 Bacteria 1409
6 Ga0065707_10159474 3300005295 Unclassified 1576
7 Ga0065707_10173954 3300005295 Bacteria 1464
8 Ga0070670_100265756 3300005331 Bacteria 1496
9 Ga0068869_100336644 3300005334 Unclassified 1227
10 Ga0070682_100000595 3300005337 Bacteria 22018
11 Ga0070689_100054574 3300005340 Bacteria 3093
12 Ga0070687_100050167 3300005343 Bacteria 2154
13 Ga0070675_100000109 3300005354 Bacteria 47889
14 Ga0070688_100003458 3300005365 Bacteria 8126
15 Ga0070667_100039619 3300005367 Bacteria 3950
16 Ga0070705_100131886 3300005440 Bacteria 1631
17 Ga0070700_100184434 3300005441 Bacteria 1455
18 Ga0068867_100061437 3300005459 Bacteria 2789
19 Ga0070679_100108222 3300005530 Bacteria 2766
20 Ga0070697_100469839 3300005536 Bacteria 1097
21 Ga0070672_100001081 3300005543 Bacteria 16605
22 Ga0070686_100137620 3300005544 Bacteria 1696
23 Ga0070686_100159579 3300005544 Bacteria 1587
24 Ga0068855_100001571 3300005563 Bacteria 28664
25 Ga0068855_100041922 3300005563 Bacteria 5425
26 Ga0068857_100019721 3300005577 Bacteria 5923
27 Ga0068859_100000459 3300005617 Bacteria 40396
28 Ga0068859_100027803 3300005617 Bacteria 5672
29 Ga0068864_100090509 3300005618 Bacteria 2697
30 Ga0068860_100010507 3300005843 Bacteria 9152
31 Ga0068860_100042302 3300005843 Bacteria 4352
32 Ga0068862_100395182 3300005844 Bacteria 1292
33 Ga0081455_10203887 3300005937 Unclassified 1479
34 Ga0075368_10035735 3300006042 Unclassified 1940
35 Ga0075363_100059356 3300006048 Unclassified 2057
36 Ga0075367_10015476 3300006178 Bacteria 4148
37 Ga0075367_10015731 3300006178 Unclassified 4118
38 Ga0075366_10027586 3300006195 Bacteria 3332
39 Ga0075366_10238539 3300006195 Bacteria 1108
40 Ga0097621_100010390 3300006237 Bacteria 6810
41 Ga0068871_100160655 3300006358 Bacteria 1921
42 Ga0075428_100009614 3300006844 Bacteria 10735
43 Ga0075430_100115762 3300006846 Bacteria 2234
44 Ga0075431_100002686 3300006847 Bacteria 17241
45 Ga0075433_10000630 3300006852 Bacteria 23544
46 Ga0075433_10027590 3300006852 Bacteria 4817
47 Ga0075434_100000062 3300006871 Bacteria 55222
48 Ga0075434_100147134 3300006871 Bacteria 2376
49 Ga0075434_100314811 3300006871 Bacteria 1586
50 Ga0075429_100084916 3300006880 Unclassified 2759
51 Ga0075429_100095452 3300006880 Bacteria 2593
52 Ga0075429_100524234 3300006880 Bacteria 1038
53 Ga0068865_100059410 3300006881 Unclassified 2674
54 Ga0097620_100000459 3300006931 Bacteria 40396
55 Ga0097620_100027804 3300006931 Bacteria 5672
56 Ga0111539_10007119 3300009094 Bacteria 14337
57 Ga0111539_10016898 3300009094 Bacteria 9034
58 Ga0111539_10019346 3300009094 Bacteria 8407
59 Ga0111539_10058476 3300009094 Bacteria 4574
60 Ga0111539_10218621 3300009094 Bacteria 2219
61 Ga0111539_10397864 3300009094 Bacteria 1604
62 Ga0111539_10860560 3300009094 Bacteria 1055
63 Ga0114129_10000488 3300009147 Bacteria 47940
64 Ga0114129_10014856 3300009147 Bacteria 11095
65 Ga0114129_10134897 3300009147 Unclassified 3387
66 Ga0114129_10178923 3300009147 Bacteria 2887
67 Ga0105249_10670443 3300009553 Bacteria 1096
68 Ga0157375_10379370 3300013308 Bacteria 1580
69 Ga0163163_10108000 3300014325 Bacteria 2809
70 Ga0157380_10090585 3300014326 Bacteria 2523
71 Ga0157376_10285599 3300014969 Bacteria 1556
72 Ga0207707_10056243 3300025912 Unclassified 3423
73 Ga0207650_10075246 3300025925 Bacteria 2548
74 Ga0207659_10000192 3300025926 Bacteria 36287
75 Ga0207690_10124498 3300025932 Bacteria 1877
76 Ga0207704_10172313 3300025938 Bacteria 1554
77 Ga0207691_10002000 3300025940 Bacteria 19939
78 Ga0207689_10129722 3300025942 Bacteria 2075
79 Ga0207689_10374008 3300025942 Bacteria 1186
80 Ga0207667_10012989 3300025949 Bacteria 9559
81 Ga0207667_10265941 3300025949 Bacteria 1753
82 Ga0207658_10057111 3300025986 Bacteria 2899
83 Ga0207648_10021856 3300026089 Bacteria 5748
84 Ga0207676_10154136 3300026095 Bacteria 1982
85 Ga0207674_10060968 3300026116 Unclassified 3813
86 Ga0207675_100214727 3300026118 Bacteria 1852
87 Ga0209813_10040847 3300027866 Unclassified 1412
88 Ga0209974_10007243 3300027876 Bacteria 3827
89 Ga0207428_10010169 3300027907 Bacteria 8414
90 Ga0207428_10012234 3300027907 Bacteria 7548
91 Ga0207428_10037819 3300027907 Bacteria 3925
92 Ga0207428_10102789 3300027907 Bacteria 2206
93 Ga0207428_10245916 3300027907 Unclassified 1335
94 Ga0268264_10016653 3300028381 Bacteria 6019
95 Ga0268264_10019882 3300028381 Bacteria 5487
96 Ga0265338_10157917 3300028800 Unclassified 1754
97 Ga0265330_10145696 3300031235 Unclassified 1007
98 Ga0265328_10030801 3300031239 Unclassified 1997
99 Ga0265320_10012470 3300031240 Bacteria 4943
100 Ga0265339_10031540 3300031249 Bacteria 2994
101 Ga0265331_10010959 3300031250 Unclassified 4980
102 Ga0265316_10036376 3300031344 Unclassified 3981
103 Ga0307408_100424642 3300031548 Bacteria 1147
104 Ga0307408_100453691 3300031548 Bacteria 1113
105 Ga0265314_10000001 3300031711 Bacteria 3792860
106 Ga0265314_10062360 3300031711 Unclassified 2534
107 Ga0307409_100019943 3300031995 Bacteria 4555
108 Ga0307414_10343861 3300032004 Bacteria 1278
109 Ga0307411_10090332 3300032005 Bacteria 2136
110 Ga0373925_0001902 3300037068 Bacteria 17322
111 Ga0439453_0024000 3300041408 Bacteria 1117
112 Ga0451797_0227547 3300041453 Bacteria 1278
113 Ga0439431_0036737 3300041997 Bacteria 1235
114 Ga0451576_0055405 3300045051 Bacteria 4148
115 Ga0451576_0081970 3300045051 Unclassified 3354
116 Ga0495669_0008781 3300046684 Bacteria 4256
117 Ga0501033_0254590 3300049570 Bacteria 1243
118 Ga0501036_0175915 3300049572 Unclassified 1802
119 Ga0501042_0240814 3300049578 Bacteria 1305
120 Ga0501071_0074968 3300049587 Bacteria 2469
121 Ga0501075_0040412 3300049591 Bacteria 3493
122 Ga0501075_0062193 3300049591 Bacteria 2814
123 Ga0501076_0092721 3300049592 Bacteria 2430
124 Ga0501077_0027463 3300049593 Bacteria 3614
125 Ga0501077_0278267 3300049593 Bacteria 1065
126 Ga0501079_0350194 3300049741 Bacteria 1157
127 Ga0501081_0164706 3300049743 Bacteria 1599
128 Ga0501045_0106031 3300049824 Bacteria 2082
129 nmdc:mga03n38_261027_c1 3300050490 Unclassified 918
130 nmdc:mga00v17_32328_c1 3300050491 Unclassified 3092
131 nmdc:mga0k408_161470_c1 3300050493 Bacteria 1335
132 nmdc:mga06z11_60239_c1 3300050494 Bacteria 1976
133 nmdc:mga04h51_48783_c1 3300050495 Unclassified 1412
134 nmdc:mga05p37_133161_c1 3300050507 Unclassified 3049
135 nmdc:mga05p37_50017_c1 3300050507 Bacteria 5141
136 nmdc:mga05p37_56520_c1 3300050507 Unclassified 4832
137 nmdc:mga05p37_726_c1 3300050507 Bacteria 36549
138 nmdc:mga05p37_761881_c1 3300050507 Bacteria 1065
139 nmdc:mga09592_242976_c1 3300050508 Bacteria 1560
140 nmdc:mga0qj67_112403_c1 3300050509 Bacteria 2199
141 nmdc:mga06r32_26348_c1 3300050510 Bacteria 5419
142 nmdc:mga06r32_838299_c1 3300050510 Bacteria 878
143 nmdc:mga06r32_852046_c1 3300050510 Bacteria 870
144 nmdc:mga08y16_12135_c1 3300050511 Bacteria 9054
145 nmdc:mga08y16_152628_c1 3300050511 Bacteria 2401
146 nmdc:mga08y16_16844_c1 3300050511 Bacteria 7694
147 nmdc:mga08y16_24020_c1 3300050511 Bacteria 6438
148 nmdc:mga08y16_452286_c1 3300050511 Unclassified 1309
149 nmdc:mga08y16_6791_c1 3300050511 Bacteria 12008
150 nmdc:mga08y16_8486_c1 3300050511 Bacteria 10761
151 nmdc:mga08y16_95153_c1 3300050511 Unclassified 3103
152 nmdc:mga0n895_13484_c1 3300050512 Bacteria 7377
153 nmdc:mga0n895_230242_c1 3300050512 Archaea 1881
154 nmdc:mga0a205_27734_c1 3300050515 Bacteria 5408
155 nmdc:mga0a205_850_c1 3300050515 Bacteria 25026
156 Ga0501084_0131191 3300054114 Bacteria 2109
157 Ga0501084_0252991 3300054114 Bacteria 1487
158 Ga0501082_0132572 3300060353 Bacteria 2162
159 Ga0530510_0065307 3300061734 Bacteria 2637
160 Ga0530510_0105532 3300061734 Bacteria 2062
161 Ga0068869_100055232
162 rootH1_10035864
163 rootH1_10136644
164 Ga0065715_10131252
165 Ga0065715_10192073
166 Ga0065707_10159474
167 Ga0065707_10173954
168 Ga0070670_100265756
169 Ga0068869_100336644
170 Ga0070682_100000595
171 Ga0070689_100054574
172 Ga0070687_100050167
173 Ga0070675_100000109
174 Ga0070688_100003458
175 Ga0070667_100039619
176 Ga0070705_100131886
177 Ga0070700_100184434
178 Ga0068867_100061437
179 Ga0070679_100108222
180 Ga0070697_100469839
181 Ga0070672_100001081
182 Ga0070686_100137620
183 Ga0070686_100159579
184 Ga0068855_100001571
185 Ga0068855_100041922
186 Ga0068857_100019721
187 Ga0068859_100000459
188 Ga0068859_100027803
189 Ga0068864_100090509
190 Ga0068860_100010507
191 Ga0068860_100042302
192 Ga0068862_100395182
193 Ga0081455_10203887
194 Ga0075368_10035735
195 Ga0075363_100059356
196 Ga0075367_10015476
197 Ga0075367_10015731
198 Ga0075366_10027586
199 Ga0075366_10238539
200 Ga0097621_100010390
201 Ga0068871_100160655
202 Ga0075428_100009614
203 Ga0075430_100115762
204 Ga0075431_100002686
205 Ga0075433_10000630
206 Ga0075433_10027590
207 Ga0075434_100000062
208 Ga0075434_100147134
209 Ga0075434_100314811
210 Ga0075429_100084916
211 Ga0075429_100095452
212 Ga0075429_100524234
213 Ga0068865_100059410
214 Ga0097620_100000459
215 Ga0097620_100027804
216 Ga0111539_10007119
217 Ga0111539_10016898
218 Ga0111539_10019346
219 Ga0111539_10058476
220 Ga0111539_10218621
221 Ga0111539_10397864
222 Ga0111539_10860560
223 Ga0114129_10000488
224 Ga0114129_10014856
225 Ga0114129_10134897
226 Ga0114129_10178923
227 Ga0105249_10670443
228 Ga0157375_10379370
229 Ga0163163_10108000
230 Ga0157380_10090585
231 Ga0157376_10285599
232 Ga0207707_10056243
233 Ga0207650_10075246
234 Ga0207659_10000192
235 Ga0207690_10124498
236 Ga0207704_10172313
237 Ga0207691_10002000
238 Ga0207689_10129722
239 Ga0207689_10374008
240 Ga0207667_10012989
241 Ga0207667_10265941
242 Ga0207658_10057111
243 Ga0207648_10021856
244 Ga0207676_10154136
245 Ga0207674_10060968
246 Ga0207675_100214727
247 Ga0209813_10040847
248 Ga0209974_10007243
249 Ga0207428_10010169
250 Ga0207428_10012234
251 Ga0207428_10037819
252 Ga0207428_10102789
253 Ga0207428_10245916
254 Ga0268264_10016653
255 Ga0268264_10019882
256 Ga0265338_10157917
257 Ga0265330_10145696
258 Ga0265328_10030801
259 Ga0265320_10012470
260 Ga0265339_10031540
261 Ga0265331_10010959
262 Ga0265316_10036376
263 Ga0307408_100424642
264 Ga0307408_100453691
265 Ga0265314_10000001
266 Ga0265314_10062360
267 Ga0307409_100019943
268 Ga0307414_10343861
269 Ga0307411_10090332
270 Ga0373925_0001902
271 Ga0439453_0024000
272 Ga0451797_0227547
273 Ga0439431_0036737
274 Ga0451576_0055405
275 Ga0451576_0081970
276 Ga0495669_0008781
277 Ga0501033_0254590
278 Ga0501036_0175915
279 Ga0501042_0240814
280 Ga0501071_0074968
281 Ga0501075_0040412
282 Ga0501075_0062193
283 Ga0501076_0092721
284 Ga0501077_0027463
285 Ga0501077_0278267
286 Ga0501079_0350194
287 Ga0501081_0164706
288 Ga0501045_0106031
289 nmdc:mga03n38_261027_c1
290 nmdc:mga00v17_32328_c1
291 nmdc:mga0k408_161470_c1
292 nmdc:mga06z11_60239_c1
293 nmdc:mga04h51_48783_c1
294 nmdc:mga05p37_133161_c1
295 nmdc:mga05p37_50017_c1
296 nmdc:mga05p37_56520_c1
297 nmdc:mga05p37_726_c1
298 nmdc:mga05p37_761881_c1
299 nmdc:mga09592_242976_c1
300 nmdc:mga0qj67_112403_c1
301 nmdc:mga06r32_26348_c1
302 nmdc:mga06r32_838299_c1
303 nmdc:mga06r32_852046_c1
304 nmdc:mga08y16_12135_c1
305 nmdc:mga08y16_152628_c1
306 nmdc:mga08y16_16844_c1
307 nmdc:mga08y16_24020_c1
308 nmdc:mga08y16_452286_c1
309 nmdc:mga08y16_6791_c1
310 nmdc:mga08y16_8486_c1
311 nmdc:mga08y16_95153_c1
312 nmdc:mga0n895_13484_c1
313 nmdc:mga0n895_230242_c1
314 nmdc:mga0a205_27734_c1
315 nmdc:mga0a205_850_c1
316 Ga0501084_0131191
317 Ga0501084_0252991
318 Ga0501082_0132572
319 Ga0530510_0065307
320 Ga0530510_0105532

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04542

Sigma70_r2

Sigma-70 region 2

42

109

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9749 139 187
4lup-assembly2.cif.gz_C crystal structure of the complex formed by region of e. coli sigmae bound to its -10 element non template strand 0.9427 6 83
3vep-assembly4.cif.gz_H crystal structure of sigd4 in complex with its negative regulator rsda 0.9394 135 187
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.9271 135 187
2o7g-assembly1.cif.gz_A crystal structure of the pribnow box recognition region of sigc from mycobacterium tuberculosis 0.9166 7 85
ID Description Score Start End Superfamily
1or7B01 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9437 8 83 1.10.1740.10
4lupC00 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9427 6 83 1.10.1740.10
3vepH00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9369 137 187 1.10.10.10
3vepE00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9359 137 189 1.10.10.10
af_P9WGH1_1_91_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9355 7 85 1.10.1740.10
ID Description Score Start End GO Terms
AF-A0A534G6C3-F1-model_v4 RNA polymerase sigma factor 0.8548 1 173 GO:0006352
GO:0016987
AF-A0A849UVF8-F1-model_v4 RNA polymerase sigma factor 0.8452 7 224 GO:0003677
GO:0006352
GO:0016987
AF-A0A534G6C3-F1-model_v4 RNA polymerase sigma factor 0.8452 1 173 GO:0006352
GO:0016987
AF-A0A661RZV4-F1-model_v4 RNA polymerase subunit sigma-24 0.844 1 215 GO:0003677
GO:0006352
GO:0016987
AF-A0A661RZV4-F1-model_v4 RNA polymerase subunit sigma-24 0.8366 1 215 GO:0003677
GO:0006352
GO:0016987

Map