F232918

General Info

Members Datasets Scaffolds Average Seq Length
159 119 318 338

Family's Representative Sequence

Representative Sequence 3300046501|Ga0495607_0017716|Ga0495607_0017716_1799_2893
Length 364
Sequence MSSAAIDIEASGRTVRISNPDKVYFSKRGETKLDLVRYYQAVEEPILRTIGNRPVLLERYPDGASGKSWFQKRVPASTPSWLQTTQVATPNGTTSDALVAADLAHILWAVNLGCLGFHVWANHAGACHGPAQAADSARQARDAPRTPEAVTEVLGDLAIADELRIDLDPSPGIGFDDLRDAAVLTRELFTELGIDARIKTSGSRGLHIYVMLEPRWDGYQVRAASVALARELERRHPDRITAQWWKEQRGSRVFIDYNQNAPHKTVFGAWCVRPKVGAQVSTPISWDTLDTIVPDELTLATVPARVTDLGDPWADRTPQSIEPLLGMSERDMASGHMDAPWPPQYPKMPNEPPRVQPSRARTPE

Samples

Sample ID Description Type Environment
1 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
2 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
3 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
4 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
5 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
6 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
7 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
8 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
9 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
10 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
11 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
12 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
13 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
14 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
15 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
16 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
17 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
18 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
19 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
20 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
21 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
22 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
23 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
24 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
25 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
26 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
27 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
40 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
41 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
42 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
43 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
44 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
45 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
46 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
47 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
48 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
49 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
50 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
51 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
52 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
53 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
54 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
55 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
56 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
57 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
58 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
59 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
60 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
61 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
62 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
63 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
64 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
65 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
66 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
67 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
68 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
69 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
70 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
71 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
72 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
73 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
74 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
75 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
76 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
77 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
78 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
79 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
80 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
91 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
92 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
93 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
94 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
95 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
96 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
97 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
99 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
100 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
101 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
102 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
103 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
104 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
105 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
106 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
107 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
108 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
109 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
110 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
111 2547132424 Nocardia nova SH22a Isolate Unclassified
112 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
113 2558860280 Kutzneria sp. 744 Isolate Unclassified
114 2643221692 Nocardia sp. Root136 Isolate Unclassified
115 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
116 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
117 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
118 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
119 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.34
Metatranscriptomes 0
Isolates 5.66

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.84
Nodule 0
Rhizoplane 4.4
Rhizosphere 72.33
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495607_0017716 3300046501 Bacteria 4561
2 Ga0070668_100069542 3300005347 Bacteria 2739
3 Ga0070688_100104061 3300005365 Bacteria 1877
4 Ga0070708_100011062 3300005445 Bacteria 7331
5 Ga0068867_100080918 3300005459 Bacteria 2447
6 Ga0070707_100017027 3300005468 Bacteria 6825
7 Ga0070686_100015454 3300005544 Bacteria 4423
8 Ga0068859_100242128 3300005617 Bacteria 1893
9 Ga0068861_100018604 3300005719 Bacteria 4951
10 Ga0068861_100147873 3300005719 Bacteria 1925
11 Ga0068862_100144553 3300005844 Bacteria 2113
12 Ga0081540_1001467 3300005983 Bacteria 20365
13 Ga0075365_10002505 3300006038 Bacteria 9042
14 Ga0075365_10007724 3300006038 Bacteria 6052
15 Ga0075365_10020542 3300006038 Bacteria 4097
16 Ga0075365_10073398 3300006038 Bacteria 2306
17 Ga0075365_10201368 3300006038 Bacteria 1394
18 Ga0075368_10017686 3300006042 Bacteria 2671
19 Ga0075363_100010502 3300006048 Bacteria 4402
20 Ga0075363_100076825 3300006048 Bacteria 1821
21 Ga0075364_10001709 3300006051 Bacteria 12070
22 Ga0075364_10008173 3300006051 Bacteria 6245
23 Ga0075364_10009720 3300006051 Bacteria 5781
24 Ga0075367_10066985 3300006178 Bacteria 2153
25 Ga0075434_100442890 3300006871 Bacteria 1320
26 Ga0097620_100242139 3300006931 Bacteria 1893
27 Ga0105243_10023104 3300009148 Bacteria 4730
28 Ga0105243_10272989 3300009148 Bacteria 1519
29 Ga0105242_10006610 3300009176 Bacteria 8934
30 Ga0105248_10132347 3300009177 Bacteria 2814
31 Ga0105248_10579242 3300009177 Bacteria 1266
32 Ga0157378_10006552 3300013297 Bacteria 10178
33 Ga0157372_10517945 3300013307 Bacteria 1390
34 Ga0157375_10108539 3300013308 Bacteria 2870
35 Ga0163163_10201296 3300014325 Bacteria 2039
36 Ga0213876_10022037 3300021384 Bacteria 3370
37 Ga0213876_10100365 3300021384 Bacteria 1534
38 Ga0213876_10151270 3300021384 Bacteria 1234
39 Ga0207646_10097155 3300025922 Bacteria 2639
40 Ga0207664_10007080 3300025929 Bacteria 7772
41 Ga0207664_10079874 3300025929 Bacteria 2657
42 Ga0207686_10126730 3300025934 Bacteria 1746
43 Ga0207669_10010091 3300025937 Bacteria 4534
44 Ga0207711_10232378 3300025941 Bacteria 1689
45 Ga0207712_10069374 3300025961 Bacteria 2529
46 Ga0207668_10052917 3300025972 Bacteria 2811
47 Ga0207639_10507336 3300026041 Bacteria 1103
48 Ga0207702_10340621 3300026078 Bacteria 1432
49 Ga0207648_10008436 3300026089 Bacteria 9982
50 Ga0207675_100070562 3300026118 Bacteria 3265
51 Ga0268265_10179034 3300028380 Bacteria 1820
52 Ga0265327_10037136 3300031251 Bacteria 2671
53 Ga0307405_10036827 3300031731 Bacteria 2935
54 Ga0307416_100014980 3300032002 Bacteria 5337
55 Ga0307415_100003816 3300032126 Bacteria 7725
56 Ga0307415_100035342 3300032126 Bacteria 3263
57 Ga0307415_100053368 3300032126 Bacteria 2754
58 Ga0373947_0121004 3300035725 Bacteria 1663
59 Ga0395900_0020901 3300037418 Bacteria 6688
60 Ga0395905_0025487 3300037471 Bacteria 5577
61 Ga0395901_0027019 3300038443 Bacteria 5894
62 Ga0400485_13147 3300038735 Bacteria 19957
63 Ga0400483_016226 3300039062 Bacteria 90099
64 Ga0400483_105021 3300039062 Bacteria 14121
65 Ga0400483_149878 3300039062 Bacteria 21419
66 Ga0400483_250422 3300039062 Bacteria 3231
67 Ga0436365_0800399 3300039437 Bacteria 2835
68 Ga0436365_0897588 3300039437 Bacteria 4776
69 Ga0436365_1204180 3300039437 Bacteria 3555
70 Ga0436361_1045035 3300039447 Bacteria 1410
71 Ga0436363_0862262 3300039450 Bacteria 1203
72 Ga0439465_0025080 3300041413 Bacteria 1881
73 Ga0451577_0014321 3300042876 Bacteria 7393
74 Ga0466969_0057895 3300044656 Bacteria 1888
75 Ga0453684_0010613 3300044712 Bacteria 15709
76 Ga0466967_0260849 3300045976 Bacteria 1658
77 Ga0495629_0101918 3300046459 Bacteria 2003
78 Ga0495651_0000416 3300046462 Bacteria 32979
79 Ga0495608_0179167 3300046511 Bacteria 1341
80 Ga0495618_0059518 3300046514 Bacteria 2421
81 Ga0495628_0015530 3300046516 Bacteria 6357
82 Ga0495628_0018803 3300046516 Bacteria 5718
83 Ga0495628_0048721 3300046516 Bacteria 3357
84 Ga0495630_0016472 3300046517 Bacteria 5402
85 Ga0495630_0061002 3300046517 Bacteria 2832
86 Ga0495652_0002078 3300046529 Bacteria 21147
87 Ga0495640_0006828 3300046533 Bacteria 8995
88 Ga0495645_0036586 3300046543 Bacteria 3578
89 Ga0495634_0156616 3300046642 Bacteria 1438
90 Ga0495658_0017792 3300046683 Bacteria 3680
91 Ga0495600_0019579 3300046809 Bacteria 4324
92 Ga0495600_0066538 3300046809 Bacteria 2356
93 Ga0495674_0279052 3300047319 Bacteria 1369
94 Ga0495680_0015873 3300047322 Bacteria 6483
95 Ga0495680_0074387 3300047322 Bacteria 2580
96 Ga0495683_0000218 3300047323 Bacteria 54068
97 Ga0495675_0170822 3300047444 Bacteria 1335
98 Ga0496104_0010847 3300048907 Bacteria 8149
99 Ga0496105_0047125 3300048908 Bacteria 3557
100 Ga0496106_0087543 3300048909 Bacteria 2400
101 Ga0496108_0365774 3300048911 Bacteria 1259
102 Ga0496109_0163834 3300048912 Bacteria 2084
103 Ga0496110_0008937 3300048913 Bacteria 8078
104 Ga0496114_0016438 3300048917 Bacteria 5963
105 Ga0501032_0032018 3300049569 Bacteria 3604
106 Ga0501033_0080457 3300049570 Bacteria 2390
107 Ga0501034_0001191 3300049571 Bacteria 35783
108 Ga0501034_0003488 3300049571 Bacteria 17867
109 Ga0501034_0021803 3300049571 Bacteria 6526
110 Ga0501034_0031849 3300049571 Bacteria 5356
111 Ga0501034_0043198 3300049571 Bacteria 4563
112 Ga0501034_0053542 3300049571 Bacteria 4063
113 Ga0501036_0278264 3300049572 Bacteria 1401
114 Ga0501037_0051535 3300049573 Bacteria 3010
115 Ga0501038_0035691 3300049574 Bacteria 4365
116 Ga0501039_0421027 3300049575 Bacteria 1049
117 Ga0501042_0096526 3300049578 Bacteria 2124
118 Ga0501043_0011267 3300049579 Bacteria 7000
119 Ga0501047_0070022 3300049581 Bacteria 3377
120 Ga0501067_0157970 3300049583 Bacteria 1263
121 Ga0501068_0021736 3300049584 Bacteria 3749
122 Ga0501069_0009497 3300049585 Bacteria 5135
123 Ga0501070_0036675 3300049586 Bacteria 4094
124 Ga0501070_0486885 3300049586 Bacteria 992
125 Ga0501072_0217229 3300049588 Bacteria 1524
126 Ga0501074_0000450 3300049590 Bacteria 24641
127 Ga0501080_0096847 3300049742 Bacteria 2739
128 Ga0501080_0277830 3300049742 Bacteria 1523
129 Ga0501083_0015488 3300049744 Bacteria 5341
130 Ga0501044_0004941 3300049823 Bacteria 14911
131 Ga0501044_0034490 3300049823 Bacteria 5306
132 Ga0501044_0352944 3300049823 Bacteria 1390
133 nmdc:mga03n38_12805_c1 3300050490 Bacteria 3168
134 nmdc:mga03n38_81375_c1 3300050490 Bacteria 1522
135 nmdc:mga00v17_20797_c1 3300050491 Bacteria 3764
136 nmdc:mga00v17_3888_c1 3300050491 Bacteria 7698
137 nmdc:mga0yw44_1794_c1 3300050492 Bacteria 8760
138 nmdc:mga0yw44_45563_c1 3300050492 Bacteria 2630
139 nmdc:mga04h51_7613_c1 3300050495 Bacteria 2866
140 Ga0495601_0194343 3300053077 Bacteria 1326
141 Ga0495619_0008043 3300053085 Bacteria 6674
142 Ga0495619_0009450 3300053085 Bacteria 6151
143 Ga0495619_0170763 3300053085 Bacteria 1504
144 Ga0500566_0000083 3300053094 Bacteria 46619
145 Ga0500573_0058715 3300053140 Bacteria 2205
146 Ga0500616_0000344 3300053153 Bacteria 66183
147 Ga0501084_0000940 3300054114 Bacteria 22536
148 Ga0501084_0227757 3300054114 Bacteria 1573
149 Ga0501082_0410375 3300060353 Bacteria 1182
150 Ga0530510_0026174 3300061734 Bacteria 4173
151 2548696338 2547132424 Bacteria 8348532
152 2552108090 2551306166 Bacteria 9731570
153 2559424070 2558860280 Bacteria 11429938
154 2644514822 2643221692 Bacteria 7282860
155 2776370660 2775506925 Bacteria 7237746
156 2795796862 2795385472 Bacteria 6627535
157 2863072211 2863067949 Bacteria 8541735
158 2919713781 2919713450 Bacteria 7431245
159 8056210636 8056207758 Bacteria 8639239
160 Ga0495607_0017716
161 Ga0070668_100069542
162 Ga0070688_100104061
163 Ga0070708_100011062
164 Ga0068867_100080918
165 Ga0070707_100017027
166 Ga0070686_100015454
167 Ga0068859_100242128
168 Ga0068861_100018604
169 Ga0068861_100147873
170 Ga0068862_100144553
171 Ga0081540_1001467
172 Ga0075365_10002505
173 Ga0075365_10007724
174 Ga0075365_10020542
175 Ga0075365_10073398
176 Ga0075365_10201368
177 Ga0075368_10017686
178 Ga0075363_100010502
179 Ga0075363_100076825
180 Ga0075364_10001709
181 Ga0075364_10008173
182 Ga0075364_10009720
183 Ga0075367_10066985
184 Ga0075434_100442890
185 Ga0097620_100242139
186 Ga0105243_10023104
187 Ga0105243_10272989
188 Ga0105242_10006610
189 Ga0105248_10132347
190 Ga0105248_10579242
191 Ga0157378_10006552
192 Ga0157372_10517945
193 Ga0157375_10108539
194 Ga0163163_10201296
195 Ga0213876_10022037
196 Ga0213876_10100365
197 Ga0213876_10151270
198 Ga0207646_10097155
199 Ga0207664_10007080
200 Ga0207664_10079874
201 Ga0207686_10126730
202 Ga0207669_10010091
203 Ga0207711_10232378
204 Ga0207712_10069374
205 Ga0207668_10052917
206 Ga0207639_10507336
207 Ga0207702_10340621
208 Ga0207648_10008436
209 Ga0207675_100070562
210 Ga0268265_10179034
211 Ga0265327_10037136
212 Ga0307405_10036827
213 Ga0307416_100014980
214 Ga0307415_100003816
215 Ga0307415_100035342
216 Ga0307415_100053368
217 Ga0373947_0121004
218 Ga0395900_0020901
219 Ga0395905_0025487
220 Ga0395901_0027019
221 Ga0400485_13147
222 Ga0400483_016226
223 Ga0400483_105021
224 Ga0400483_149878
225 Ga0400483_250422
226 Ga0436365_0800399
227 Ga0436365_0897588
228 Ga0436365_1204180
229 Ga0436361_1045035
230 Ga0436363_0862262
231 Ga0439465_0025080
232 Ga0451577_0014321
233 Ga0466969_0057895
234 Ga0453684_0010613
235 Ga0466967_0260849
236 Ga0495629_0101918
237 Ga0495651_0000416
238 Ga0495608_0179167
239 Ga0495618_0059518
240 Ga0495628_0015530
241 Ga0495628_0018803
242 Ga0495628_0048721
243 Ga0495630_0016472
244 Ga0495630_0061002
245 Ga0495652_0002078
246 Ga0495640_0006828
247 Ga0495645_0036586
248 Ga0495634_0156616
249 Ga0495658_0017792
250 Ga0495600_0019579
251 Ga0495600_0066538
252 Ga0495674_0279052
253 Ga0495680_0015873
254 Ga0495680_0074387
255 Ga0495683_0000218
256 Ga0495675_0170822
257 Ga0496104_0010847
258 Ga0496105_0047125
259 Ga0496106_0087543
260 Ga0496108_0365774
261 Ga0496109_0163834
262 Ga0496110_0008937
263 Ga0496114_0016438
264 Ga0501032_0032018
265 Ga0501033_0080457
266 Ga0501034_0001191
267 Ga0501034_0003488
268 Ga0501034_0021803
269 Ga0501034_0031849
270 Ga0501034_0043198
271 Ga0501034_0053542
272 Ga0501036_0278264
273 Ga0501037_0051535
274 Ga0501038_0035691
275 Ga0501039_0421027
276 Ga0501042_0096526
277 Ga0501043_0011267
278 Ga0501047_0070022
279 Ga0501067_0157970
280 Ga0501068_0021736
281 Ga0501069_0009497
282 Ga0501070_0036675
283 Ga0501070_0486885
284 Ga0501072_0217229
285 Ga0501074_0000450
286 Ga0501080_0096847
287 Ga0501080_0277830
288 Ga0501083_0015488
289 Ga0501044_0004941
290 Ga0501044_0034490
291 Ga0501044_0352944
292 nmdc:mga03n38_12805_c1
293 nmdc:mga03n38_81375_c1
294 nmdc:mga00v17_20797_c1
295 nmdc:mga00v17_3888_c1
296 nmdc:mga0yw44_1794_c1
297 nmdc:mga0yw44_45563_c1
298 nmdc:mga04h51_7613_c1
299 Ga0495601_0194343
300 Ga0495619_0008043
301 Ga0495619_0009450
302 Ga0495619_0170763
303 Ga0500566_0000083
304 Ga0500573_0058715
305 Ga0500616_0000344
306 Ga0501084_0000940
307 Ga0501084_0227757
308 Ga0501082_0410375
309 Ga0530510_0026174
310 2548696338
311 2552108090
312 2559424070
313 2644514822
314 2776370660
315 2795796862
316 2863072211
317 2919713781
318 8056210636

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21686

LigD_Prim-Pol

LigD, primase-polymerase domain

31

313

0.98

PF01896

DNA_primase_S

DNA primase small subunit

165

286

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
5dmu-assembly1.cif.gz_A structure of the nhej polymerase from methanocella paludicola 0.9489 1 291
6sa1-assembly1.cif.gz_A post catalytic complex of prim-polc from mycobacterium smegmatis with gapped dna and 3'-dutp 0.94 2 325
6sa1-assembly1.cif.gz_A post catalytic complex of prim-polc from mycobacterium smegmatis with gapped dna and 3'-dutp 0.9262 2 325
2iry-assembly1.cif.gz_A crystal structure of the polymerase domain from mycobacterium tuberculosis ligase d with dgtp and manganese. 0.9202 8 286
5dmu-assembly1.cif.gz_A structure of the nhej polymerase from methanocella paludicola 0.9154 1 291
ID Description Score Start End Superfamily
af_P95226_24_305_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9617 28 298 3.90.920.10
af_O69697_22_304_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9588 26 298 3.90.920.10
2iruB02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9318 129 258 3.30.70.3300
af_P9WNV3_16_301_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9238 21 287 3.90.920.10
af_O69697_22_304_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9226 26 298 3.90.920.10
ID Description Score Start End GO Terms
AF-A0A5P9PXE1-F1-model_v4 DNA ligase-like protein 0.9876 1 334 GO:0016874
AF-A0A3D3KRH1-F1-model_v4 ATP-dependent DNA ligase 0.9869 163 290 GO:0016874
AF-A0A358SN15-F1-model_v4 ATP-dependent DNA ligase 0.9858 16 314 GO:0016874
AF-A0A7X6SJE6-F1-model_v4 ATP-dependent DNA ligase 0.985 1 332 GO:0016874
AF-A0A7W0HBC6-F1-model_v4 ATP-dependent DNA ligase 0.9848 1 247 GO:0016874

Map