F232434

General Info

Members Datasets Scaffolds Average Seq Length
159 118 158 269

Family's Representative Sequence

Representative Sequence 3300028577|Ga0265318_10000011|Ga0265318_10000011190
Length 310
Sequence MSLTRRNLLAASATGLMTGGWLAAGCRGNAVGTQATRSPEMNEPTTSAATKARMPVLFVGHGSPMNAIEDNTWSQGFRALASLVPPPKAILCVSAHWFVGGTFLTGNDRPKTIHDFGGFPDELFAMQYPAPGSAVLAERVVHLLGPSRSAVRLDWGLDHGTWSVLHHLRPAADVPVVQLSIDGRMAPRGHLDLGRALAPLREEGVLILGSGNITHNLRYAMTHAFSGDVSTPDWASKFDADVARAITQHDGKFLSEAAASDAGRMSHPTLDHYLPLLYAAGAADERDRITFPITGFDLGSLSMRAVAFGA

Samples

Sample ID Description Type Environment
1 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
16 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
27 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
28 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
29 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
30 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
34 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
37 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
38 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
39 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
49 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
50 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
51 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
52 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
53 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
54 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
55 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
56 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
57 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
58 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
59 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
60 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
61 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
62 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
63 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
64 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
65 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
66 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
67 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
68 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
69 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
70 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
71 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
72 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
73 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
74 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
75 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
76 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
77 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
78 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
79 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
80 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
81 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
82 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
83 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
84 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
85 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
86 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
87 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
88 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
89 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
90 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
100 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
101 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
102 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
103 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
104 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
105 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
107 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
108 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
109 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
110 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
111 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
112 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
113 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
114 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
115 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
116 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
117 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
118 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.37
Metatranscriptomes 0
Isolates 0.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.77
Nodule 0
Rhizoplane 0
Rhizosphere 91.19
Stem 0
Stem Tuber 0
Unclassified 5.03

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10090557 3300005327 Bacteria 2520
2 Ga0070658_10247665 3300005327 Bacteria 1511
3 Ga0070670_100082723 3300005331 Bacteria 2759
4 Ga0070677_10003895 3300005333 Bacteria 4837
5 Ga0070680_100289685 3300005336 Bacteria 1388
6 Ga0070682_100547504 3300005337 Bacteria 905
7 Ga0070689_100034767 3300005340 Bacteria 3846
8 Ga0070669_100017635 3300005353 Bacteria 5093
9 Ga0070675_100001431 3300005354 Bacteria 17515
10 Ga0070688_100126747 3300005365 Bacteria 1717
11 Ga0070710_10201099 3300005437 Bacteria 1258
12 Ga0070678_100113384 3300005456 Bacteria 2125
13 Ga0068867_100643591 3300005459 Bacteria 929
14 Ga0070698_100210315 3300005471 Bacteria 1880
15 Ga0068853_100013179 3300005539 Bacteria 6748
16 Ga0070686_100151974 3300005544 Bacteria 1622
17 Ga0068855_100269034 3300005563 Bacteria 1895
18 Ga0068856_100227131 3300005614 Unclassified 1882
19 Ga0068860_100250354 3300005843 Bacteria 1725
20 Ga0081539_10009772 3300005985 Bacteria 7934
21 Ga0070717_10742436 3300006028 Bacteria 892
22 Ga0075367_10022320 3300006178 Bacteria 3549
23 Ga0075366_10013402 3300006195 Bacteria 4667
24 Ga0075428_100178035 3300006844 Unclassified 2302
25 Ga0075428_100323415 3300006844 Bacteria 1657
26 Ga0075428_100702764 3300006844 Bacteria 1077
27 Ga0075431_100303852 3300006847 Unclassified 1611
28 Ga0075433_10013356 3300006852 Bacteria 6673
29 Ga0075433_10048330 3300006852 Unclassified 3699
30 Ga0075434_100020880 3300006871 Bacteria 6360
31 Ga0075434_100096856 3300006871 Bacteria 2955
32 Ga0075434_100276728 3300006871 Unclassified 1698
33 Ga0075429_100001735 3300006880 Bacteria 18051
34 Ga0099794_10069794 3300007265 Bacteria 1719
35 Ga0099795_10132293 3300007788 Bacteria 1008
36 Ga0111539_10623153 3300009094 Unclassified 1256
37 Ga0114129_10010578 3300009147 Bacteria 13153
38 Ga0114129_10033504 3300009147 Bacteria 7260
39 Ga0114129_10038529 3300009147 Bacteria 6742
40 Ga0114129_10058609 3300009147 Bacteria 5386
41 Ga0114129_10128916 3300009147 Bacteria 3476
42 Ga0114129_10147156 3300009147 Bacteria 3226
43 Ga0114129_10401722 3300009147 Bacteria 1806
44 Ga0114129_10571529 3300009147 Bacteria 1468
45 Ga0105238_10015638 3300009551 Bacteria 7679
46 Ga0099796_10090757 3300010159 Bacteria 1135
47 Ga0105239_10057357 3300010375 Unclassified 4271
48 Ga0157380_10067893 3300014326 Bacteria 2872
49 Ga0213876_10015164 3300021384 Bacteria 4082
50 Ga0209233_1008413 3300025261 Bacteria 3197
51 Ga0207682_10002804 3300025893 Bacteria 7709
52 Ga0207694_10099647 3300025924 Bacteria 2301
53 Ga0207650_10049291 3300025925 Bacteria 3109
54 Ga0207650_10066147 3300025925 Bacteria 2710
55 Ga0207659_10051188 3300025926 Bacteria 2936
56 Ga0207667_10525612 3300025949 Bacteria 1198
57 Ga0207639_10009025 3300026041 Bacteria 6867
58 Ga0207641_10197534 3300026088 Bacteria 1853
59 Ga0207683_10075388 3300026121 Bacteria 2986
60 Ga0209588_1004306 3300027671 Bacteria 4006
61 Ga0265334_10002437 3300028573 Bacteria 8753
62 Ga0265334_10035212 3300028573 Bacteria 1983
63 Ga0265318_10000011 3300028577 Bacteria 231078
64 Ga0265318_10001656 3300028577 Bacteria 12805
65 Ga0265318_10012886 3300028577 Bacteria 3545
66 Ga0265323_10003998 3300028653 Bacteria 6393
67 Ga0265330_10000017 3300031235 Bacteria 166302
68 Ga0265330_10004197 3300031235 Bacteria 7349
69 Ga0265332_10000160 3300031238 Bacteria 54530
70 Ga0265332_10000466 3300031238 Bacteria 28116
71 Ga0265328_10006560 3300031239 Bacteria 4905
72 Ga0265328_10019634 3300031239 Bacteria 2593
73 Ga0265320_10000005 3300031240 Bacteria 354422
74 Ga0265320_10021889 3300031240 Bacteria 3431
75 Ga0265325_10037778 3300031241 Bacteria 2551
76 Ga0265329_10005748 3300031242 Bacteria 4982
77 Ga0265329_10011695 3300031242 Bacteria 3182
78 Ga0265339_10053120 3300031249 Bacteria 2204
79 Ga0265331_10000013 3300031250 Bacteria 296011
80 Ga0265331_10003382 3300031250 Bacteria 10344
81 Ga0265316_10001773 3300031344 Bacteria 22802
82 Ga0265316_10066133 3300031344 Bacteria 2798
83 Ga0265313_10000097 3300031595 Bacteria 89295
84 Ga0265313_10014162 3300031595 Bacteria 4731
85 Ga0316579_10030125 3300031691 Bacteria 2478
86 Ga0265314_10000024 3300031711 Bacteria 295216
87 Ga0265314_10027919 3300031711 Bacteria 4217
88 Ga0265342_10004253 3300031712 Bacteria 11343
89 Ga0316576_10223616 3300031727 Bacteria 1416
90 Ga0316578_10108576 3300031728 Unclassified 1666
91 Ga0316577_10307595 3300031733 Bacteria 898
92 Ga0307406_10082051 3300031901 Bacteria 2146
93 Ga0307409_100041044 3300031995 Bacteria 3452
94 Ga0307416_100011217 3300032002 Bacteria 5958
95 Ga0373945_0146871 3300035116 Bacteria 954
96 Ga0373927_0181586 3300035695 Bacteria 1380
97 Ga0373937_0157411 3300036401 Bacteria 2130
98 Ga0373937_0253139 3300036401 Bacteria 1660
99 Ga0316582_0006612 3300036647 Bacteria 6108
100 Ga0316584_0011714 3300036712 Bacteria 6171
101 Ga0395899_0000596 3300037312 Bacteria 37960
102 Ga0395900_0000192 3300037418 Bacteria 98186
103 Ga0395898_0000055 3300037466 Bacteria 278557
104 Ga0395905_0000067 3300037471 Bacteria 181887
105 Ga0395905_0000581 3300037471 Bacteria 49273
106 Ga0436364_1096953 3300037853 Bacteria 8877
107 Ga0395901_0003984 3300038443 Bacteria 14861
108 Ga0436365_0845973 3300039437 Bacteria 13977
109 Ga0436365_1891434 3300039437 Bacteria 59790
110 Ga0451853_1766472 3300041512 Bacteria 2063
111 Ga0451853_2200820 3300041512 Bacteria 1483
112 Ga0451577_0000530 3300042876 Bacteria 63316
113 Ga0451577_0004291 3300042876 Bacteria 15138
114 Ga0453683_0078469 3300044673 Bacteria 2068
115 Ga0453684_0000068 3300044712 Bacteria 461699
116 Ga0453684_0001993 3300044712 Bacteria 52373
117 Ga0453684_0016722 3300044712 Bacteria 11440
118 Ga0453684_0061501 3300044712 Bacteria 4820
119 Ga0453684_0068514 3300044712 Bacteria 4505
120 Ga0451576_0028836 3300045051 Bacteria 5944
121 Ga0451576_0074585 3300045051 Bacteria 3531
122 Ga0495586_0226535 3300046535 Bacteria 1063
123 Ga0495634_0220549 3300046642 Bacteria 1171
124 Ga0496126_0101738 3300048929 Bacteria 2513
125 Ga0501031_0143539 3300049568 Bacteria 1560
126 Ga0501034_0387205 3300049571 Bacteria 1322
127 Ga0501036_0395467 3300049572 Bacteria 1153
128 Ga0501039_0161285 3300049575 Bacteria 1762
129 Ga0501040_0077789 3300049576 Bacteria 2295
130 Ga0501041_0347135 3300049577 Bacteria 937
131 Ga0501042_0010826 3300049578 Bacteria 6133
132 Ga0501042_0083278 3300049578 Bacteria 2293
133 Ga0501046_0036682 3300049580 Bacteria 3945
134 Ga0501047_0092524 3300049581 Bacteria 2902
135 Ga0501072_0016987 3300049588 Bacteria 5593
136 Ga0501074_0194108 3300049590 Bacteria 1447
137 Ga0501074_0591230 3300049590 Bacteria 785
138 Ga0501075_0073950 3300049591 Bacteria 2578
139 Ga0501076_0156664 3300049592 Bacteria 1854
140 Ga0501077_0133208 3300049593 Bacteria 1576
141 Ga0501079_0088466 3300049741 Bacteria 2398
142 Ga0501044_0092680 3300049823 Bacteria 3047
143 Ga0501045_0070458 3300049824 Bacteria 2572
144 nmdc:mga0k408_63000_c1 3300050493 Bacteria 2156
145 nmdc:mga06z11_105336_c1 3300050494 Bacteria 1554
146 nmdc:mga05p37_30809_c1 3300050507 Bacteria 6547
147 nmdc:mga05p37_472059_c1 3300050507 Bacteria 1447
148 nmdc:mga05p37_60582_c1 3300050507 Bacteria 4660
149 nmdc:mga09592_318_c1 3300050508 Bacteria 35193
150 nmdc:mga0qj67_149382_c1 3300050509 Bacteria 1895
151 nmdc:mga06r32_33779_c1 3300050510 Unclassified 4819
152 nmdc:mga0n895_2775_c1 3300050512 Bacteria 13847
153 nmdc:mga0n895_361648_c1 3300050512 Bacteria 1469
154 nmdc:mga0a205_23537_c1 3300050515 Bacteria 5843
155 Ga0500651_0218999 3300053093 Bacteria 1117
156 Ga0501084_0062199 3300054114 Bacteria 3125
157 Ga0501082_0053096 3300060353 Bacteria 3494
158 Ga0530510_0141302 3300061734 Bacteria 1774

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049577 Ga0501041_0347135 Ga0501041_0347135_19_681 218
2 3300049590 Ga0501074_0591230 Ga0501074_0591230_16_759 236
3 3300037471 Ga0395905_0000581 Ga0395905_0000581_29538_30356 241
4 3300048929 Ga0496126_0101738 Ga0496126_0101738_47_808 245
5 3300010159 Ga0099796_10090757 Ga0099796_100907572 249
6 3300005985 Ga0081539_10009772 Ga0081539_100097728 250
7 3300007265 Ga0099794_10069794 Ga0099794_100697944 250
8 3300027671 Ga0209588_1004306 Ga0209588_10043062 250
9 3300035116 Ga0373945_0146871 Ga0373945_0146871_33_794 250
10 3300035695 Ga0373927_0181586 Ga0373927_0181586_479_1240 250
11 3300036401 Ga0373937_0157411 Ga0373937_0157411_1313_2074 250
12 3300049571 Ga0501034_0387205 Ga0501034_0387205_484_1242 250
13 3300049578 Ga0501042_0010826 Ga0501042_0010826_1032_1823 250
14 3300049591 Ga0501075_0073950 Ga0501075_0073950_1693_2484 250
15 3300053093 Ga0500651_0218999 Ga0500651_0218999_271_1035 250
16 3300061734 Ga0530510_0141302 Ga0530510_0141302_272_1063 250
17 3300005614 Ga0068856_100227131 Ga0068856_1002271311 251
18 3300050493 nmdc:mga0k408_63000_c1 nmdc:mga0k408_63000_c1_1258_2025 251
19 iso_pu_bacteria 2524023250 2524609395 251
20 3300006844 Ga0075428_100323415 Ga0075428_1003234152 252
21 3300006852 Ga0075433_10013356 Ga0075433_100133566 252
22 3300006871 Ga0075434_100096856 Ga0075434_1000968562 252
23 3300006880 Ga0075429_100001735 Ga0075429_1000017355 252
24 3300007788 Ga0099795_10132293 Ga0099795_101322932 252
25 3300009147 Ga0114129_10038529 Ga0114129_100385294 252
26 3300025925 Ga0207650_10049291 Ga0207650_100492911 252
27 3300036712 Ga0316584_0011714 Ga0316584_0011714_2304_3071 252
28 3300044712 Ga0453684_0001993 Ga0453684_0001993_17417_18184 252
29 3300044712 Ga0453684_0061501 Ga0453684_0061501_4005_4775 252
30 3300045051 Ga0451576_0074585 Ga0451576_0074585_1483_2253 252
31 3300046535 Ga0495586_0226535 Ga0495586_0226535_198_968 252
32 3300046642 Ga0495634_0220549 Ga0495634_0220549_130_900 252
33 3300050507 nmdc:mga05p37_30809_c1 nmdc:mga05p37_30809_c1_1903_2673 252
34 3300050508 nmdc:mga09592_318_c1 nmdc:mga09592_318_c1_32545_33315 252
35 3300050509 nmdc:mga0qj67_149382_c1 nmdc:mga0qj67_149382_c1_1086_1856 252
36 3300005471 Ga0070698_100210315 Ga0070698_1002103152 253
37 3300021384 Ga0213876_10015164 Ga0213876_100151644 253
38 3300025261 Ga0209233_1008413 Ga0209233_10084133 253
39 3300026088 Ga0207641_10197534 Ga0207641_101975342 253
40 3300037853 Ga0436364_1096953 Ga0436364_1096953_1234_1998 253
41 3300039437 Ga0436365_0845973 Ga0436365_0845973_4325_5089 253
42 3300049581 Ga0501047_0092524 Ga0501047_0092524_1941_2729 253
43 3300049823 Ga0501044_0092680 Ga0501044_0092680_311_1099 253
44 3300005459 Ga0068867_100643591 Ga0068867_1006435911 254
45 3300005843 Ga0068860_100250354 Ga0068860_1002503542 254
46 3300006178 Ga0075367_10022320 Ga0075367_100223202 254
47 3300006195 Ga0075366_10013402 Ga0075366_100134026 254
48 3300006847 Ga0075431_100303852 Ga0075431_1003038522 254
49 3300009147 Ga0114129_10033504 Ga0114129_100335042 254
50 3300009147 Ga0114129_10571529 Ga0114129_105715292 254
51 3300010375 Ga0105239_10057357 Ga0105239_100573572 254
52 3300041512 Ga0451853_2200820 Ga0451853_2200820_206_1018 254
53 3300050494 nmdc:mga06z11_105336_c1 nmdc:mga06z11_105336_c1_447_1223 254
54 3300050507 nmdc:mga05p37_472059_c1 nmdc:mga05p37_472059_c1_419_1201 254
55 3300050510 nmdc:mga06r32_33779_c1 nmdc:mga06r32_33779_c1_3326_4108 254
56 3300005337 Ga0070682_100547504 Ga0070682_1005475041 255
57 3300005340 Ga0070689_100034767 Ga0070689_1000347673 255
58 3300005365 Ga0070688_100126747 Ga0070688_1001267472 255
59 3300005539 Ga0068853_100013179 Ga0068853_1000131794 255
60 3300005544 Ga0070686_100151974 Ga0070686_1001519742 255
61 3300005563 Ga0068855_100269034 Ga0068855_1002690341 255
62 3300009147 Ga0114129_10010578 Ga0114129_100105783 255
63 3300009147 Ga0114129_10147156 Ga0114129_101471562 255
64 3300009147 Ga0114129_10401722 Ga0114129_104017222 255
65 3300009551 Ga0105238_10015638 Ga0105238_100156382 255
66 3300025924 Ga0207694_10099647 Ga0207694_100996472 255
67 3300025949 Ga0207667_10525612 Ga0207667_105256121 255
68 3300026041 Ga0207639_10009025 Ga0207639_100090254 255
69 3300028573 Ga0265334_10002437 Ga0265334_100024377 255
70 3300028573 Ga0265334_10035212 Ga0265334_100352122 255
71 3300028577 Ga0265318_10001656 Ga0265318_100016566 255
72 3300028577 Ga0265318_10012886 Ga0265318_100128862 255
73 3300028653 Ga0265323_10003998 Ga0265323_100039984 255
74 3300031235 Ga0265330_10004197 Ga0265330_100041973 255
75 3300031238 Ga0265332_10000466 Ga0265332_100004668 255
76 3300031239 Ga0265328_10019634 Ga0265328_100196342 255
77 3300031240 Ga0265320_10021889 Ga0265320_100218892 255
78 3300031241 Ga0265325_10037778 Ga0265325_100377782 255
79 3300031242 Ga0265329_10005748 Ga0265329_100057482 255
80 3300031249 Ga0265339_10053120 Ga0265339_100531202 255
81 3300031250 Ga0265331_10003382 Ga0265331_100033822 255
82 3300031344 Ga0265316_10066133 Ga0265316_100661332 255
83 3300031711 Ga0265314_10027919 Ga0265314_100279192 255
84 3300031712 Ga0265342_10004253 Ga0265342_100042535 255
85 3300031727 Ga0316576_10223616 Ga0316576_102236161 255
86 3300031728 Ga0316578_10108576 Ga0316578_101085761 255
87 3300031733 Ga0316577_10307595 Ga0316577_103075951 255
88 3300036401 Ga0373937_0253139 Ga0373937_0253139_97_1020 255
89 3300036647 Ga0316582_0006612 Ga0316582_0006612_1726_2541 255
90 3300041512 Ga0451853_1766472 Ga0451853_1766472_443_1327 255
91 3300042876 Ga0451577_0000530 Ga0451577_0000530_21192_21971 255
92 3300042876 Ga0451577_0004291 Ga0451577_0004291_4839_5645 255
93 3300044673 Ga0453683_0078469 Ga0453683_0078469_476_1255 255
94 3300044712 Ga0453684_0000068 Ga0453684_0000068_311402_312199 255
95 3300044712 Ga0453684_0016722 Ga0453684_0016722_7453_8232 255
96 3300044712 Ga0453684_0068514 Ga0453684_0068514_2979_3785 255
97 3300045051 Ga0451576_0028836 Ga0451576_0028836_2420_3226 255
98 3300005437 Ga0070710_10201099 Ga0070710_102010992 256
99 3300006028 Ga0070717_10742436 Ga0070717_107424361 256
100 3300006871 Ga0075434_100276728 Ga0075434_1002767281 256
101 3300009094 Ga0111539_10623153 Ga0111539_106231532 256
102 3300009147 Ga0114129_10058609 Ga0114129_100586092 256
103 3300009147 Ga0114129_10128916 Ga0114129_101289162 256
104 3300028577 Ga0265318_10000011 Ga0265318_10000011190 256
105 3300031235 Ga0265330_10000017 Ga0265330_10000017101 256
106 3300031238 Ga0265332_10000160 Ga0265332_100001606 256
107 3300031239 Ga0265328_10006560 Ga0265328_100065605 256
108 3300031240 Ga0265320_10000005 Ga0265320_10000005132 256
109 3300031242 Ga0265329_10011695 Ga0265329_100116952 256
110 3300031250 Ga0265331_10000013 Ga0265331_10000013127 256
111 3300031344 Ga0265316_10001773 Ga0265316_1000177318 256
112 3300031595 Ga0265313_10000097 Ga0265313_1000009712 256
113 3300031595 Ga0265313_10014162 Ga0265313_100141622 256
114 3300031691 Ga0316579_10030125 Ga0316579_100301252 256
115 3300031711 Ga0265314_10000024 Ga0265314_10000024133 256
116 3300039437 Ga0436365_1891434 Ga0436365_1891434_44952_45734 256
117 3300050512 nmdc:mga0n895_361648_c1 nmdc:mga0n895_361648_c1_203_994 256
118 3300006852 Ga0075433_10048330 Ga0075433_100483303 257
119 3300006871 Ga0075434_100020880 Ga0075434_1000208805 257
120 3300050512 nmdc:mga0n895_2775_c1 nmdc:mga0n895_2775_c1_9924_10718 257
121 3300050515 nmdc:mga0a205_23537_c1 nmdc:mga0a205_23537_c1_2199_2993 257
122 3300006844 Ga0075428_100178035 Ga0075428_1001780352 259
123 3300050507 nmdc:mga05p37_60582_c1 nmdc:mga05p37_60582_c1_3145_3942 259
124 3300006844 Ga0075428_100702764 Ga0075428_1007027642 260
125 3300049568 Ga0501031_0143539 Ga0501031_0143539_347_1141 260
126 3300049572 Ga0501036_0395467 Ga0501036_0395467_194_988 260
127 3300049575 Ga0501039_0161285 Ga0501039_0161285_176_970 260
128 3300049576 Ga0501040_0077789 Ga0501040_0077789_935_1729 260
129 3300049578 Ga0501042_0083278 Ga0501042_0083278_714_1508 260
130 3300049580 Ga0501046_0036682 Ga0501046_0036682_2284_3078 260
131 3300049588 Ga0501072_0016987 Ga0501072_0016987_2290_3084 260
132 3300049590 Ga0501074_0194108 Ga0501074_0194108_547_1341 260
133 3300049592 Ga0501076_0156664 Ga0501076_0156664_816_1610 260
134 3300049593 Ga0501077_0133208 Ga0501077_0133208_72_866 260
135 3300049741 Ga0501079_0088466 Ga0501079_0088466_1088_1882 260
136 3300049824 Ga0501045_0070458 Ga0501045_0070458_1537_2331 260
137 3300054114 Ga0501084_0062199 Ga0501084_0062199_1450_2244 260
138 3300060353 Ga0501082_0053096 Ga0501082_0053096_1853_2647 260
139 3300031901 Ga0307406_10082051 Ga0307406_100820512 277
140 3300031995 Ga0307409_100041044 Ga0307409_1000410442 277
141 3300032002 Ga0307416_100011217 Ga0307416_1000112172 277
142 3300014326 Ga0157380_10067893 Ga0157380_100678932 279
143 3300005327 Ga0070658_10247665 Ga0070658_102476651 281
144 3300037312 Ga0395899_0000596 Ga0395899_0000596_24624_25472 281
145 3300037418 Ga0395900_0000192 Ga0395900_0000192_56145_56993 281
146 3300037466 Ga0395898_0000055 Ga0395898_0000055_256060_256908 281
147 3300037471 Ga0395905_0000067 Ga0395905_0000067_21650_22498 281
148 3300038443 Ga0395901_0003984 Ga0395901_0003984_3061_3909 281
149 3300005327 Ga0070658_10090557 Ga0070658_100905572 282
150 3300005331 Ga0070670_100082723 Ga0070670_1000827232 282
151 3300005333 Ga0070677_10003895 Ga0070677_100038952 282
152 3300005336 Ga0070680_100289685 Ga0070680_1002896852 282
153 3300005353 Ga0070669_100017635 Ga0070669_1000176352 282
154 3300005354 Ga0070675_100001431 Ga0070675_1000014315 282
155 3300005456 Ga0070678_100113384 Ga0070678_1001133842 282
156 3300025893 Ga0207682_10002804 Ga0207682_100028047 282
157 3300025925 Ga0207650_10066147 Ga0207650_100661473 282
158 3300025926 Ga0207659_10051188 Ga0207659_100511882 282
159 3300026121 Ga0207683_10075388 Ga0207683_100753882 282

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02900

LigB

Catalytic LigB subunit of aromatic ring-opening dioxygenase

55

297

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
2pw6-assembly1.cif.gz_A-2 crystal structure of uncharacterized protein jw3007 from escherichia coli k12 0.9081 3 257
2pw6-assembly1.cif.gz_A-2 crystal structure of uncharacterized protein jw3007 from escherichia coli k12 0.9045 3 257
8iq8-assembly1.cif.gz_D crystal structure of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (dhpao) from acinetobacter baumannii 0.8089 4 255
7txy-assembly2.cif.gz_E crystal structure of the 2-aminophenol 1,6-dioxygenase from the aro bacterial microcompartment of micromonospora rosaria 0.7901 4 255
3vsh-assembly1.cif.gz_C crystal structure of native 1,6-apd (with iron), 2-animophenol-1,6-dioxygenase 0.7755 4 256
ID Description Score Start End Superfamily
af_P24197_1_271_3.40.830.10 Alpha Beta;3-Layer(aba) Sandwich;Protocatechuate 4,5-dioxygenase; Chain B;LigB-like 0.9578 2 257 3.40.830.10
af_Q54W77_1_267_3.40.830.10 Alpha Beta;3-Layer(aba) Sandwich;Protocatechuate 4,5-dioxygenase; Chain B;LigB-like 0.9046 1 257 3.40.830.10
af_P24197_1_271_3.40.830.10 Alpha Beta;3-Layer(aba) Sandwich;Protocatechuate 4,5-dioxygenase; Chain B;LigB-like 0.9026 2 257 3.40.830.10
af_I1MQB9_2_262_3.40.830.10 Alpha Beta;3-Layer(aba) Sandwich;Protocatechuate 4,5-dioxygenase; Chain B;LigB-like 0.898 5 256 3.40.830.10
2pw6A00 Alpha Beta;3-Layer(aba) Sandwich;Protocatechuate 4,5-dioxygenase; Chain B;LigB-like 0.8912 5 257 3.40.830.10
ID Description Score Start End GO Terms
AF-A0A845A672-F1-model_v4 4,5-DOPA dioxygenase extradiol (EC 1.13.11.29) 0.9943 1 259 GO:0008198
GO:0008270
GO:0016701
GO:0051213
AF-A0A7W0X297-F1-model_v4 4,5-DOPA dioxygenase extradiol (EC 1.13.11.29) 0.9895 4 161 GO:0008198
GO:0008270
GO:0050297
AF-A0A1A0SAQ4-F1-model_v4 deleted 0.9889 4 256
AF-A0A1Q4UH87-F1-model_v4 deleted 0.9886 4 255
AF-A0A2S0LW63-F1-model_v4 4,5-DOPA dioxygenase extradiol 0.9875 1 258 GO:0008198
GO:0008270
GO:0016701
GO:0051213

Feature Viewer

pLDDT pTM Quality
92.73 0.92 High
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Predicted Structure (AlphaFold2)

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