F230910
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 158 | 127 | 316 | 397 |
Family's Representative Sequence
| Representative Sequence | iso_pu_bacteria|2887443736|2887446284 |
| Length | 440 |
| Sequence | PRPGVPAPGGVPLTLGAPPTATPGVAVDGFLPQHPPREEGRRVGPHDGPHESPYRAGSGAEYGPDFGVYLHVPFCTVRCGYCDFNTYTAAELGSGANRSDYAATAVGEIALADEALRSAGMARREVRTVFVGGGTPTLLPAADLAAMLDAVDDTWGLAADAEVTTEANPDSVDAADLAALAAAGFTRVSFGMQSAVPEVLATLERTHDPERIPAVVGWARDAGLSVSLDLIYGAPGETLAQWQRSLEAVLALSPDHVSAYALVVEQGTKMAAQVRRGELPMPDPDDEADKYELAATMLADAGYDWYEISNFARTPADRCRHNIAYWRSDDWWGIGPGAHSHVAGQRWWNVKHPRPYAAAVAAGNLPVDGSEVLSGEDRETERILLGIRLADGLDVGATLADRLPQLVEEGLLEAAPAQRGRAVLTLRGRLLADTVVRRLT |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300003214 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL | Metagenome | Endosphere |
| 2 | 3300003578 | Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) | Metatranscriptome | Unclassified |
| 3 | 3300003752 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 | Metagenome | Endosphere |
| 4 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 5 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 6 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 9 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 10 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 11 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 12 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 13 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 14 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 15 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 16 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 17 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 18 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 19 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 20 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 21 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 22 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 23 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 24 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 25 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 26 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 27 | 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 28 | 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 29 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 30 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 32 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 39 | 3300035725 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 | Metagenome | Rhizosphere |
| 40 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 41 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 42 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 43 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 44 | 3300044683 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R | Metagenome | Rhizosphere |
| 45 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 46 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 47 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 48 | 3300044901 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R | Metagenome | Rhizosphere |
| 49 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 50 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 51 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 52 | 3300046455 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere | Metagenome | Rhizosphere |
| 53 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 54 | 3300046473 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere | Metagenome | Rhizosphere |
| 55 | 3300046475 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere | Metagenome | Rhizosphere |
| 56 | 3300046523 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere | Metagenome | Rhizosphere |
| 57 | 3300046615 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere | Metagenome | Rhizosphere |
| 58 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 59 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 60 | 3300047315 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere | Metagenome | Rhizosphere |
| 61 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 62 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 63 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 64 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 65 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 66 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 67 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 68 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 69 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 70 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 71 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 72 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 73 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 74 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 75 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 76 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 77 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 78 | 3300049576 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 79 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 80 | 3300049585 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 | Metagenome | Rhizosphere |
| 81 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 82 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 83 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 84 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 85 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 86 | 3300050490 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation | Metagenome | Endosphere |
| 87 | 3300050496 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation | Metagenome | Endosphere |
| 88 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 89 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 90 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 91 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 92 | 3300050515 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation | Metagenome | Rhizosphere |
| 93 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 94 | 3300053140 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere | Metagenome | Endosphere |
| 95 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 96 | 3300061734 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) | Metagenome | Rhizosphere |
| 97 | 2887443736 | Ruania rhizosphaerae LNNU 22110 | Isolate | Rhizosphere |
| 98 | 2643221616 | Leifsonia sp. Root227 | Isolate | Unclassified |
| 99 | 2643221617 | Nocardioides sp. Root79 | Isolate | Unclassified |
| 100 | 2643221620 | Nocardioides sp. Root240 | Isolate | Unclassified |
| 101 | 2675903058 | Actinopolymorpha cephalotaxi CPCC 202808 | Isolate | Rhizosphere |
| 102 | 2751185788 | Curtobacterium pusillum AA3 | Isolate | Unclassified |
| 103 | 2773857762 | Nocardioides sp. SAI-095 | Isolate | Unclassified |
| 104 | 2784132109 | Dermacoccus sp. DS28 SAI-028 | Isolate | Unclassified |
| 105 | 2808606439 | Nocardioides sp. SLBN-172 | Isolate | Unclassified |
| 106 | 2811994878 | Nocardioides sp. SLBN-169 | Isolate | Unclassified |
| 107 | 2844852863 | Herbiconiux flava DSM 26474 | Isolate | Rhizosphere |
| 108 | 2852643534 | Leifsonia sp. AK011 | Isolate | Rhizosphere |
| 109 | 2855386786 | Nocardioides ferulae EGI 63112 | Isolate | Unclassified |
| 110 | 2857710386 | Brevibacterium sp. R-73093 | Isolate | Unclassified |
| 111 | 2857737099 | Lysinimonas sp. R-73066 | Isolate | Unclassified |
| 112 | 2862993130 | Planctomonas deserti 13S1-3 v2 | Isolate | Rhizosphere |
| 113 | 2884763398 | Leifsonia sp. PS1209 | Isolate | Stem Tuber |
| 114 | 2891968417 | Nocardioides luteus SAI-037 | Isolate | Unclassified |
| 115 | 2904430863 | Curtobacterium oceanosedimentum 1519 | Isolate | Rhizosphere |
| 116 | 2904501621 | Curtobacterium sp. 1909 | Isolate | Unclassified |
| 117 | 2908674828 | Curtobacterium sp. 1517 | Isolate | Rhizosphere |
| 118 | 2909074476 | Curtobacterium sp. 1310 | Isolate | Rhizosphere |
| 119 | 2919039151 | Curtobacterium sp. 260 | Isolate | Rhizosphere |
| 120 | 2928104781 | Curtobacterium sp. 1544 | Isolate | Rhizosphere |
| 121 | 2928500415 | Curtobacterium oceanosedimentum 1257 | Isolate | Rhizosphere |
| 122 | 2966921586 | Rathayibacter agropyri 617 | Isolate | Rhizosphere |
| 123 | 2995726249 | Leucobacter zeae CC-MF41 | Isolate | Rhizosphere |
| 124 | 8055034563 | Leucobacter allii H21R-40 | Isolate | Rhizosphere |
| 125 | 8055037949 | Leucobacter rhizosphaerae H25R-14 | Isolate | Rhizosphere |
| 126 | 8056037122 | Herbiconiux gentiana CPCC 205716 | Isolate | Rhizosphere |
| 127 | 8057345674 | Herbiconiux aconitum CPCC 205763 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 78.48 |
| Metatranscriptomes | 1.9 |
| Isolates | 19.62 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 10.13 |
| Nodule | 0 |
| Rhizoplane | 7.59 |
| Rhizosphere | 67.09 |
| Stem | 0 |
| Stem Tuber | 0.63 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI25165J46597_1000002 | 3300003214 | Bacteria | 765387 |
| 2 | Ga0006562J51391_1155671 | 3300003578 | Bacteria | 1390 |
| 3 | Ga0055539_1000008 | 3300003752 | Bacteria | 537665 |
| 4 | Ga0070683_100269718 | 3300005329 | Bacteria | 1619 |
| 5 | Ga0070680_100098883 | 3300005336 | Bacteria | 2421 |
| 6 | Ga0070714_100097550 | 3300005435 | Bacteria | 2584 |
| 7 | Ga0070708_100063752 | 3300005445 | Bacteria | 3300 |
| 8 | Ga0070708_100094203 | 3300005445 | Bacteria | 2732 |
| 9 | Ga0070681_10013012 | 3300005458 | Bacteria | 8264 |
| 10 | Ga0070681_10188627 | 3300005458 | Bacteria | 1981 |
| 11 | Ga0070707_100188651 | 3300005468 | Bacteria | 2010 |
| 12 | Ga0070679_100018082 | 3300005530 | Bacteria | 6831 |
| 13 | Ga0070684_100046029 | 3300005535 | Bacteria | 3780 |
| 14 | Ga0068858_100000045 | 3300005842 | Bacteria | 127595 |
| 15 | Ga0081455_10000202 | 3300005937 | Bacteria | 76003 |
| 16 | Ga0075365_10031062 | 3300006038 | Bacteria | 3425 |
| 17 | Ga0075365_10111177 | 3300006038 | Bacteria | 1883 |
| 18 | Ga0075365_10172384 | 3300006038 | Bacteria | 1510 |
| 19 | Ga0075364_10004090 | 3300006051 | Bacteria | 8368 |
| 20 | Ga0075428_100006757 | 3300006844 | Bacteria | 12761 |
| 21 | Ga0111539_10010045 | 3300009094 | Bacteria | 11930 |
| 22 | Ga0105245_10011299 | 3300009098 | Bacteria | 7776 |
| 23 | Ga0114129_10051463 | 3300009147 | Bacteria | 5782 |
| 24 | Ga0105243_10089074 | 3300009148 | Bacteria | 2536 |
| 25 | Ga0105248_10017900 | 3300009177 | Bacteria | 7819 |
| 26 | Ga0157369_10023995 | 3300013105 | Bacteria | 6785 |
| 27 | Ga0157375_10061542 | 3300013308 | Bacteria | 3728 |
| 28 | Ga0163163_10024997 | 3300014325 | Bacteria | 5689 |
| 29 | Ga0163163_10047510 | 3300014325 | Bacteria | 4220 |
| 30 | Ga0157379_10000058 | 3300014968 | Bacteria | 69871 |
| 31 | Ga0163161_10153360 | 3300017792 | Bacteria | 1752 |
| 32 | Ga0206354_10758246 | 3300020081 | Bacteria | 1223 |
| 33 | Ga0206353_11666957 | 3300020082 | Bacteria | 7156 |
| 34 | Ga0207707_10139645 | 3300025912 | Bacteria | 2118 |
| 35 | Ga0207652_10030241 | 3300025921 | Bacteria | 4533 |
| 36 | Ga0207694_10099895 | 3300025924 | Bacteria | 2299 |
| 37 | Ga0207644_10100161 | 3300025931 | Bacteria | 2176 |
| 38 | Ga0207690_10109654 | 3300025932 | Bacteria | 1986 |
| 39 | Ga0207709_10088711 | 3300025935 | Bacteria | 2014 |
| 40 | Ga0207711_10010848 | 3300025941 | Bacteria | 7574 |
| 41 | Ga0207661_10089127 | 3300025944 | Bacteria | 2566 |
| 42 | Ga0207661_10151398 | 3300025944 | Bacteria | 2006 |
| 43 | Ga0207703_10000009 | 3300026035 | Bacteria | 343983 |
| 44 | Ga0316574_0000834 | 3300035398 | Bacteria | 13457 |
| 45 | Ga0373947_0063400 | 3300035725 | Bacteria | 2251 |
| 46 | Ga0373925_0018883 | 3300037068 | Bacteria | 5012 |
| 47 | Ga0395899_0010522 | 3300037312 | Bacteria | 7086 |
| 48 | Ga0395898_0205256 | 3300037466 | Bacteria | 1880 |
| 49 | Ga0395901_0029303 | 3300038443 | Bacteria | 5666 |
| 50 | Ga0395901_0216620 | 3300038443 | Bacteria | 2002 |
| 51 | Ga0395901_0398661 | 3300038443 | Bacteria | 1414 |
| 52 | Ga0466965_0000002 | 3300044683 | Bacteria | 297957 |
| 53 | Ga0466965_0008197 | 3300044683 | Bacteria | 4825 |
| 54 | Ga0466963_0096986 | 3300044694 | Bacteria | 2014 |
| 55 | Ga0466970_0085188 | 3300044765 | Bacteria | 1711 |
| 56 | Ga0466957_0087844 | 3300044842 | Bacteria | 1944 |
| 57 | Ga0466960_0021884 | 3300044901 | Bacteria | 2852 |
| 58 | Ga0466959_0066953 | 3300045049 | Bacteria | 2605 |
| 59 | Ga0466958_0064688 | 3300045836 | Bacteria | 2231 |
| 60 | Ga0466967_0102490 | 3300045976 | Bacteria | 2618 |
| 61 | Ga0466967_0151330 | 3300045976 | Bacteria | 2169 |
| 62 | Ga0495603_0030714 | 3300046455 | Bacteria | 3236 |
| 63 | Ga0495629_0000904 | 3300046459 | Bacteria | 23809 |
| 64 | Ga0495582_0002994 | 3300046473 | Bacteria | 9469 |
| 65 | Ga0495639_0019013 | 3300046475 | Bacteria | 2995 |
| 66 | Ga0495644_0038815 | 3300046523 | Bacteria | 1796 |
| 67 | Ga0495656_0004255 | 3300046615 | Bacteria | 4888 |
| 68 | Ga0495658_0001234 | 3300046683 | Bacteria | 13420 |
| 69 | Ga0495613_0010842 | 3300046689 | Bacteria | 6762 |
| 70 | Ga0495581_0002128 | 3300047315 | Bacteria | 11165 |
| 71 | Ga0495672_0078294 | 3300047320 | Bacteria | 1850 |
| 72 | Ga0496104_0043019 | 3300048907 | Bacteria | 4241 |
| 73 | Ga0496108_0004656 | 3300048911 | Bacteria | 11058 |
| 74 | Ga0496108_0018212 | 3300048911 | Bacteria | 5749 |
| 75 | Ga0496109_0155268 | 3300048912 | Bacteria | 2143 |
| 76 | Ga0496109_0183695 | 3300048912 | Bacteria | 1965 |
| 77 | Ga0496110_0146312 | 3300048913 | Bacteria | 2137 |
| 78 | Ga0496110_0177935 | 3300048913 | Bacteria | 1931 |
| 79 | Ga0496110_0234289 | 3300048913 | Bacteria | 1670 |
| 80 | Ga0496111_0057764 | 3300048914 | Bacteria | 2809 |
| 81 | Ga0496114_0053503 | 3300048917 | Bacteria | 3365 |
| 82 | Ga0496114_0058755 | 3300048917 | Bacteria | 3212 |
| 83 | Ga0496114_0177708 | 3300048917 | Bacteria | 1858 |
| 84 | Ga0496117_0001586 | 3300048920 | Bacteria | 32228 |
| 85 | Ga0496117_0009678 | 3300048920 | Bacteria | 8916 |
| 86 | Ga0496118_0001102 | 3300048921 | Bacteria | 41962 |
| 87 | Ga0496119_0019627 | 3300048922 | Bacteria | 4966 |
| 88 | Ga0496120_0019624 | 3300048923 | Bacteria | 4318 |
| 89 | Ga0496122_0005975 | 3300048925 | Bacteria | 14245 |
| 90 | Ga0496124_0000439 | 3300048927 | Bacteria | 73567 |
| 91 | Ga0496124_0007292 | 3300048927 | Bacteria | 11795 |
| 92 | Ga0496126_0014062 | 3300048929 | Bacteria | 8108 |
| 93 | Ga0501034_0007818 | 3300049571 | Bacteria | 11373 |
| 94 | Ga0501034_0008610 | 3300049571 | Bacteria | 10767 |
| 95 | Ga0501034_0009094 | 3300049571 | Bacteria | 10435 |
| 96 | Ga0501034_0260237 | 3300049571 | Bacteria | 1678 |
| 97 | Ga0501036_0019179 | 3300049572 | Bacteria | 5738 |
| 98 | Ga0501037_0067625 | 3300049573 | Bacteria | 2601 |
| 99 | Ga0501040_0105903 | 3300049576 | Bacteria | 1965 |
| 100 | Ga0501046_0182762 | 3300049580 | Bacteria | 1567 |
| 101 | Ga0501069_0039690 | 3300049585 | Bacteria | 2600 |
| 102 | Ga0501069_0141733 | 3300049585 | Bacteria | 1379 |
| 103 | Ga0501070_0005154 | 3300049586 | Bacteria | 11139 |
| 104 | Ga0501070_0295823 | 3300049586 | Bacteria | 1319 |
| 105 | Ga0501072_0177597 | 3300049588 | Bacteria | 1698 |
| 106 | Ga0501073_0013200 | 3300049589 | Bacteria | 6021 |
| 107 | Ga0501073_0072251 | 3300049589 | Bacteria | 2403 |
| 108 | Ga0501073_0099975 | 3300049589 | Bacteria | 2014 |
| 109 | Ga0501080_0000446 | 3300049742 | Bacteria | 32115 |
| 110 | Ga0501083_0007894 | 3300049744 | Bacteria | 7537 |
| 111 | Ga0501083_0009482 | 3300049744 | Bacteria | 6876 |
| 112 | nmdc:mga03n38_3752_c1 | 3300050490 | Bacteria | 4924 |
| 113 | nmdc:mga07m45_79156_c1 | 3300050496 | Bacteria | 1876 |
| 114 | nmdc:mga05p37_128_c1 | 3300050507 | Bacteria | 69414 |
| 115 | nmdc:mga09592_4126_c1 | 3300050508 | Bacteria | 11735 |
| 116 | nmdc:mga06r32_9402_c1 | 3300050510 | Bacteria | 8817 |
| 117 | nmdc:mga08y16_4464_c1 | 3300050511 | Bacteria | 14627 |
| 118 | nmdc:mga0a205_22722_c1 | 3300050515 | Bacteria | 5945 |
| 119 | Ga0500568_0001373 | 3300053139 | Bacteria | 15818 |
| 120 | Ga0500568_0002186 | 3300053139 | Bacteria | 11769 |
| 121 | Ga0500573_0000106 | 3300053140 | Bacteria | 35262 |
| 122 | Ga0500573_0001432 | 3300053140 | Bacteria | 11412 |
| 123 | Ga0500573_0004416 | 3300053140 | Bacteria | 7411 |
| 124 | Ga0500616_0000071 | 3300053153 | Bacteria | 232527 |
| 125 | Ga0500616_0001853 | 3300053153 | Bacteria | 19132 |
| 126 | Ga0500616_0044956 | 3300053153 | Bacteria | 2355 |
| 127 | Ga0530510_0221414 | 3300061734 | Bacteria | 1407 |
| 128 | 2887446284 | 2887443736 | Bacteria | 4426037 |
| 129 | 2644095936 | 2643221616 | Bacteria | 4066575 |
| 130 | 2644098627 | 2643221617 | Bacteria | 5139111 |
| 131 | 2644115988 | 2643221620 | Bacteria | 5134593 |
| 132 | 2676475619 | 2675903058 | Bacteria | 6822861 |
| 133 | 2753301711 | 2751185788 | Bacteria | 4541048 |
| 134 | 2774397086 | 2773857762 | Bacteria | 5971770 |
| 135 | 2784472533 | 2784132109 | Bacteria | 3141763 |
| 136 | 2809198730 | 2808606439 | Bacteria | 5952208 |
| 137 | 2812352698 | 2811994878 | Bacteria | 5992952 |
| 138 | 2844854866 | 2844852863 | Bacteria | 3849151 |
| 139 | 2852645704 | 2852643534 | Bacteria | 3013378 |
| 140 | 2855389818 | 2855386786 | Bacteria | 4752232 |
| 141 | 2857711595 | 2857710386 | Bacteria | 3186771 |
| 142 | 2857739629 | 2857737099 | Bacteria | 3104305 |
| 143 | 2862995829 | 2862993130 | Bacteria | 3860849 |
| 144 | 2884765299 | 2884763398 | Bacteria | 4091164 |
| 145 | 2891969764 | 2891968417 | Bacteria | 5821697 |
| 146 | 2904433142 | 2904430863 | Bacteria | 3486923 |
| 147 | 2904502737 | 2904501621 | Bacteria | 3401437 |
| 148 | 2908677580 | 2908674828 | Bacteria | 3382763 |
| 149 | 2909075148 | 2909074476 | Bacteria | 3436050 |
| 150 | 2919040562 | 2919039151 | Bacteria | 3391018 |
| 151 | 2928106572 | 2928104781 | Bacteria | 3877447 |
| 152 | 2928501610 | 2928500415 | Bacteria | 3384541 |
| 153 | 2966922355 | 2966921586 | Bacteria | 3092803 |
| 154 | 2995727876 | 2995726249 | Bacteria | 3470435 |
| 155 | 8055036139 | 8055034563 | Bacteria | 3562128 |
| 156 | 8055038350 | 8055037949 | Bacteria | 3337834 |
| 157 | 8056038866 | 8056037122 | Bacteria | 3854319 |
| 158 | 8057349589 | 8057345674 | Bacteria | 4160394 |
| 159 | JGI25165J46597_1000002 | |||
| 160 | Ga0006562J51391_1155671 | |||
| 161 | Ga0055539_1000008 | |||
| 162 | Ga0070683_100269718 | |||
| 163 | Ga0070680_100098883 | |||
| 164 | Ga0070714_100097550 | |||
| 165 | Ga0070708_100063752 | |||
| 166 | Ga0070708_100094203 | |||
| 167 | Ga0070681_10013012 | |||
| 168 | Ga0070681_10188627 | |||
| 169 | Ga0070707_100188651 | |||
| 170 | Ga0070679_100018082 | |||
| 171 | Ga0070684_100046029 | |||
| 172 | Ga0068858_100000045 | |||
| 173 | Ga0081455_10000202 | |||
| 174 | Ga0075365_10031062 | |||
| 175 | Ga0075365_10111177 | |||
| 176 | Ga0075365_10172384 | |||
| 177 | Ga0075364_10004090 | |||
| 178 | Ga0075428_100006757 | |||
| 179 | Ga0111539_10010045 | |||
| 180 | Ga0105245_10011299 | |||
| 181 | Ga0114129_10051463 | |||
| 182 | Ga0105243_10089074 | |||
| 183 | Ga0105248_10017900 | |||
| 184 | Ga0157369_10023995 | |||
| 185 | Ga0157375_10061542 | |||
| 186 | Ga0163163_10024997 | |||
| 187 | Ga0163163_10047510 | |||
| 188 | Ga0157379_10000058 | |||
| 189 | Ga0163161_10153360 | |||
| 190 | Ga0206354_10758246 | |||
| 191 | Ga0206353_11666957 | |||
| 192 | Ga0207707_10139645 | |||
| 193 | Ga0207652_10030241 | |||
| 194 | Ga0207694_10099895 | |||
| 195 | Ga0207644_10100161 | |||
| 196 | Ga0207690_10109654 | |||
| 197 | Ga0207709_10088711 | |||
| 198 | Ga0207711_10010848 | |||
| 199 | Ga0207661_10089127 | |||
| 200 | Ga0207661_10151398 | |||
| 201 | Ga0207703_10000009 | |||
| 202 | Ga0316574_0000834 | |||
| 203 | Ga0373947_0063400 | |||
| 204 | Ga0373925_0018883 | |||
| 205 | Ga0395899_0010522 | |||
| 206 | Ga0395898_0205256 | |||
| 207 | Ga0395901_0029303 | |||
| 208 | Ga0395901_0216620 | |||
| 209 | Ga0395901_0398661 | |||
| 210 | Ga0466965_0000002 | |||
| 211 | Ga0466965_0008197 | |||
| 212 | Ga0466963_0096986 | |||
| 213 | Ga0466970_0085188 | |||
| 214 | Ga0466957_0087844 | |||
| 215 | Ga0466960_0021884 | |||
| 216 | Ga0466959_0066953 | |||
| 217 | Ga0466958_0064688 | |||
| 218 | Ga0466967_0102490 | |||
| 219 | Ga0466967_0151330 | |||
| 220 | Ga0495603_0030714 | |||
| 221 | Ga0495629_0000904 | |||
| 222 | Ga0495582_0002994 | |||
| 223 | Ga0495639_0019013 | |||
| 224 | Ga0495644_0038815 | |||
| 225 | Ga0495656_0004255 | |||
| 226 | Ga0495658_0001234 | |||
| 227 | Ga0495613_0010842 | |||
| 228 | Ga0495581_0002128 | |||
| 229 | Ga0495672_0078294 | |||
| 230 | Ga0496104_0043019 | |||
| 231 | Ga0496108_0004656 | |||
| 232 | Ga0496108_0018212 | |||
| 233 | Ga0496109_0155268 | |||
| 234 | Ga0496109_0183695 | |||
| 235 | Ga0496110_0146312 | |||
| 236 | Ga0496110_0177935 | |||
| 237 | Ga0496110_0234289 | |||
| 238 | Ga0496111_0057764 | |||
| 239 | Ga0496114_0053503 | |||
| 240 | Ga0496114_0058755 | |||
| 241 | Ga0496114_0177708 | |||
| 242 | Ga0496117_0001586 | |||
| 243 | Ga0496117_0009678 | |||
| 244 | Ga0496118_0001102 | |||
| 245 | Ga0496119_0019627 | |||
| 246 | Ga0496120_0019624 | |||
| 247 | Ga0496122_0005975 | |||
| 248 | Ga0496124_0000439 | |||
| 249 | Ga0496124_0007292 | |||
| 250 | Ga0496126_0014062 | |||
| 251 | Ga0501034_0007818 | |||
| 252 | Ga0501034_0008610 | |||
| 253 | Ga0501034_0009094 | |||
| 254 | Ga0501034_0260237 | |||
| 255 | Ga0501036_0019179 | |||
| 256 | Ga0501037_0067625 | |||
| 257 | Ga0501040_0105903 | |||
| 258 | Ga0501046_0182762 | |||
| 259 | Ga0501069_0039690 | |||
| 260 | Ga0501069_0141733 | |||
| 261 | Ga0501070_0005154 | |||
| 262 | Ga0501070_0295823 | |||
| 263 | Ga0501072_0177597 | |||
| 264 | Ga0501073_0013200 | |||
| 265 | Ga0501073_0072251 | |||
| 266 | Ga0501073_0099975 | |||
| 267 | Ga0501080_0000446 | |||
| 268 | Ga0501083_0007894 | |||
| 269 | Ga0501083_0009482 | |||
| 270 | nmdc:mga03n38_3752_c1 | |||
| 271 | nmdc:mga07m45_79156_c1 | |||
| 272 | nmdc:mga05p37_128_c1 | |||
| 273 | nmdc:mga09592_4126_c1 | |||
| 274 | nmdc:mga06r32_9402_c1 | |||
| 275 | nmdc:mga08y16_4464_c1 | |||
| 276 | nmdc:mga0a205_22722_c1 | |||
| 277 | Ga0500568_0001373 | |||
| 278 | Ga0500568_0002186 | |||
| 279 | Ga0500573_0000106 | |||
| 280 | Ga0500573_0001432 | |||
| 281 | Ga0500573_0004416 | |||
| 282 | Ga0500616_0000071 | |||
| 283 | Ga0500616_0001853 | |||
| 284 | Ga0500616_0044956 | |||
| 285 | Ga0530510_0221414 | |||
| 286 | 2887446284 | |||
| 287 | 2644095936 | |||
| 288 | 2644098627 | |||
| 289 | 2644115988 | |||
| 290 | 2676475619 | |||
| 291 | 2753301711 | |||
| 292 | 2774397086 | |||
| 293 | 2784472533 | |||
| 294 | 2809198730 | |||
| 295 | 2812352698 | |||
| 296 | 2844854866 | |||
| 297 | 2852645704 | |||
| 298 | 2855389818 | |||
| 299 | 2857711595 | |||
| 300 | 2857739629 | |||
| 301 | 2862995829 | |||
| 302 | 2884765299 | |||
| 303 | 2891969764 | |||
| 304 | 2904433142 | |||
| 305 | 2904502737 | |||
| 306 | 2908677580 | |||
| 307 | 2909075148 | |||
| 308 | 2919040562 | |||
| 309 | 2928106572 | |||
| 310 | 2928501610 | |||
| 311 | 2966922355 | |||
| 312 | 2995727876 | |||
| 313 | 8055036139 | |||
| 314 | 8055038350 | |||
| 315 | 8056038866 | |||
| 316 | 8057349589 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1olt-assembly1.cif.gz_A | coproporphyrinogen iii oxidase (hemn) from escherichia coli is a radical sam enzyme. | 0.8109 | 13 | 405 |
| 6q2q-assembly1.cif.gz_A | crystal structure of mouse viperin bound to uridine triphosphate and s-adenosylhomocysteine | 0.7903 | 28 | 230 |
| 1olt-assembly1.cif.gz_A | coproporphyrinogen iii oxidase (hemn) from escherichia coli is a radical sam enzyme. | 0.7822 | 13 | 405 |
| 6iad-assembly1.cif.gz_A | apo crystal structure of archaeal methanocaldococcus infernus elp3 (del1-54) | 0.7772 | 69 | 259 |
| 6b4c-assembly9.cif.gz_I | structure of viperin from trichoderma virens | 0.7623 | 30 | 264 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P9WP73_8_223_3.80.30.20 | Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain | 0.9669 | 32 | 249 | 3.80.30.20 |
| af_P9WP73_8_223_3.80.30.20 | Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain | 0.9538 | 32 | 249 | 3.80.30.20 |
| af_A4IGH2_157_284_3.30.750.200 | Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA; | 0.9385 | 152 | 277 | 3.30.750.200 |
| af_Q5SUV1_33_283_3.20.20.70 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I | 0.9332 | 24 | 279 | 3.20.20.70 |
| af_Q5SUV1_33_283_3.20.20.70 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I | 0.9225 | 24 | 279 | 3.20.20.70 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A5B9G2T6-F1-model_v4 | Heme chaperone HemW | 0.9923 | 1 | 407 |
GO:0004109
GO:0005737 GO:0006779 GO:0046872 GO:0051539 |
| AF-A0A5B9G2T6-F1-model_v4 | Heme chaperone HemW | 0.9875 | 1 | 407 |
GO:0004109
GO:0005737 GO:0006779 GO:0046872 GO:0051539 |
| AF-A0A0K2R2K0-F1-model_v4 | deleted | 0.9873 | 127 | 291 |
|
| AF-A0A499VH95-F1-model_v4 | Radical SAM core domain-containing protein | 0.9815 | 135 | 407 |
GO:0003824
GO:0005737 GO:0006779 GO:0051539 |
| AF-A0A7K0KUU1-F1-model_v4 | Radical SAM protein | 0.98 | 125 | 406 |
GO:0003824
GO:0005737 GO:0006779 GO:0051539 |