F229839

General Info

Members Datasets Scaffolds Average Seq Length
158 116 157 312

Family's Representative Sequence

Representative Sequence 3300025923|Ga0207681_10145092|Ga0207681_101450922
Length 345
Sequence MPVRAYTQPFISKPRFDGSRFLPCSGYSPTSDMNFQQLRSVREASRRGFNLTEVARVLHASQPGISRQIRELEEELGVELFVRAGKRLTALTEMGKLVMPLVDGMLNDAENLRRAGQEFAKQSTGTLSIAATHSQARYALPGAVRDFRQRFPQVRFNLHQGSPEQVADMLISGEADIAIATEALAGYDTLIALPCYRWTHSVIVPQGHSLLDGPLTLDRLAGYPIITYSPGFTGRTHIDEAFEKAGLAFDLVITAMDADVVKTYVELGLGVGIVASIAFDEVRDANLRAIDARHLFAVNLTKLAIRRGRFLRSFVYDFIETFASPLTRAVVEEALATAPGEASEA

Samples

Sample ID Description Type Environment
1 2871451962 Mesorhizobium sp. M7A.F.Ca.US.006.01.1.1 Isolate Nodule
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
4 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
5 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
6 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
7 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
8 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
9 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
10 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
11 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
12 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
13 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
14 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
15 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
16 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
17 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
18 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
21 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
22 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
23 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
24 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
25 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
26 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
27 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
28 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
29 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
30 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
32 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
33 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
34 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
40 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
41 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
43 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
44 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
45 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
46 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
47 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
48 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
49 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
50 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
51 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
52 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
53 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
54 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
55 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
56 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
57 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
58 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
59 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
60 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
61 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
62 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
63 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
64 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
65 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
66 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
67 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
68 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
69 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
70 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
71 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
72 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
73 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
74 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
75 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
76 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
77 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
78 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
79 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
80 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
81 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
82 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
83 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
84 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
85 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
100 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
103 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
104 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
105 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
106 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
107 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
108 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
109 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
110 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
111 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
112 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
113 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
114 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
115 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
116 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.37
Metatranscriptomes 0
Isolates 0.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.99
Nodule 1.9
Rhizoplane 3.8
Rhizosphere 67.72
Stem 0
Stem Tuber 0
Unclassified 7.59

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10030521 3300003323 Bacteria 3341
2 rootH1_10049609 3300003323 Bacteria 2815
3 Ga0055525_1000004 3300003759 Bacteria 888039
4 Ga0070659_100191389 3300005366 Bacteria 1681
5 Ga0070706_100077192 3300005467 Bacteria 3083
6 Ga0070706_100096404 3300005467 Bacteria 2746
7 Ga0070697_100291820 3300005536 Bacteria 1401
8 Ga0070665_100089663 3300005548 Bacteria 3081
9 Ga0068859_100467806 3300005617 Bacteria 1356
10 Ga0070717_10194141 3300006028 Bacteria 1775
11 Ga0075365_10118400 3300006038 Bacteria 1825
12 Ga0075363_100018826 3300006048 Bacteria 3444
13 Ga0075364_10006476 3300006051 Bacteria 6881
14 Ga0075364_10038848 3300006051 Bacteria 3084
15 Ga0075362_10064089 3300006177 Bacteria 1667
16 Ga0075367_10015928 3300006178 Bacteria 4097
17 Ga0075366_10014104 3300006195 Bacteria 4559
18 Ga0075366_10029333 3300006195 Bacteria 3232
19 Ga0075366_10124966 3300006195 Bacteria 1551
20 Ga0075370_10012638 3300006353 Bacteria 4469
21 Ga0099823_1000014 3300006944 Bacteria 89398
22 Ga0111539_10000041 3300009094 Bacteria 131679
23 Ga0114129_10086154 3300009147 Bacteria 4357
24 Ga0105237_10026238 3300009545 Bacteria 5954
25 Ga0105249_10258490 3300009553 Bacteria 1729
26 Ga0163162_10204803 3300013306 Bacteria 2102
27 Ga0157380_10292002 3300014326 Bacteria 1497
28 Ga0182008_10004515 3300014497 Bacteria 8124
29 Ga0157376_10020286 3300014969 Bacteria 5139
30 Ga0182006_1019892 3300015261 Bacteria 2819
31 Ga0182007_10000519 3300015262 Bacteria 22700
32 Ga0182005_1010061 3300015265 Bacteria 2728
33 Ga0213872_10000012 3300021361 Bacteria 191291
34 Ga0213872_10105523 3300021361 Bacteria 1254
35 Ga0209563_100013 3300025230 Bacteria 941463
36 Ga0209233_1013782 3300025261 Bacteria 2300
37 Ga0209673_1013580 3300025273 Bacteria 3205
38 Ga0209256_1001895 3300025299 Bacteria 19134
39 Ga0209051_1001668 3300025303 Bacteria 17928
40 Ga0209051_1009722 3300025303 Bacteria 4928
41 Ga0207660_10154088 3300025917 Bacteria 1768
42 Ga0207657_10248237 3300025919 Bacteria 1419
43 Ga0207681_10145092 3300025923 Bacteria 1772
44 Ga0207709_10037691 3300025935 Bacteria 2874
45 Ga0209389_1000720 3300027296 Bacteria 20684
46 Ga0207428_10000158 3300027907 Bacteria 93131
47 Ga0268266_10063001 3300028379 Bacteria 3201
48 Ga0307515_10000058 3300028794 Bacteria 259680
49 Ga0307515_10000283 3300028794 Bacteria 124822
50 Ga0307515_10033875 3300028794 Bacteria 8391
51 Ga0265324_10017904 3300029957 Bacteria 2573
52 Ga0307511_10001681 3300030521 Bacteria 23318
53 Ga0265316_10000180 3300031344 Bacteria 71764
54 Ga0307513_10054037 3300031456 Bacteria 4310
55 Ga0307513_10103572 3300031456 Bacteria 2862
56 Ga0307513_10160555 3300031456 Bacteria 2141
57 Ga0307408_100351881 3300031548 Bacteria 1250
58 Ga0307514_10000567 3300031649 Bacteria 70155
59 Ga0307514_10000662 3300031649 Bacteria 62034
60 Ga0307416_100009767 3300032002 Bacteria 6306
61 Ga0373950_0000897 3300034818 Bacteria 3756
62 Ga0373931_0001128 3300035691 Bacteria 11331
63 Ga0373927_0024352 3300035695 Bacteria 3961
64 Ga0373925_0137746 3300037068 Bacteria 1908
65 Ga0395899_0000127 3300037312 Bacteria 119435
66 Ga0395899_0001910 3300037312 Bacteria 17196
67 Ga0395899_0004632 3300037312 Bacteria 10722
68 Ga0395899_0017376 3300037312 Bacteria 5479
69 Ga0395900_0000846 3300037418 Bacteria 40292
70 Ga0395900_0024621 3300037418 Bacteria 6160
71 Ga0395900_0250804 3300037418 Bacteria 1771
72 Ga0395905_0007918 3300037471 Bacteria 10512
73 Ga0395905_0009434 3300037471 Bacteria 9534
74 Ga0395905_0036095 3300037471 Bacteria 4643
75 Ga0395905_0115701 3300037471 Bacteria 2520
76 Ga0395901_0000730 3300038443 Bacteria 37345
77 Ga0395901_0012106 3300038443 Bacteria 8750
78 Ga0436361_0351372 3300039447 Bacteria 183069
79 Ga0436361_1010349 3300039447 Bacteria 1939
80 Ga0451793_0927364 3300041452 Bacteria 1599
81 Ga0439445_0026698 3300042004 Bacteria 1480
82 Ga0439457_009268 3300042014 Bacteria 2296
83 Ga0450894_008410 3300042131 Bacteria 1335
84 Ga0450898_008393 3300042134 Bacteria 1629
85 Ga0451577_0008808 3300042876 Bacteria 9773
86 Ga0451577_0010621 3300042876 Bacteria 8778
87 Ga0466969_0001101 3300044656 Bacteria 14596
88 Ga0466965_0005860 3300044683 Bacteria 5545
89 Ga0466965_0053222 3300044683 Bacteria 2011
90 Ga0466966_0012826 3300044684 Bacteria 5549
91 Ga0466961_0027796 3300044693 Bacteria 3637
92 Ga0453684_0305484 3300044712 Bacteria 1807
93 Ga0466970_0017344 3300044765 Bacteria 3720
94 Ga0466960_0005442 3300044901 Bacteria 5042
95 Ga0466960_0084933 3300044901 Bacteria 1602
96 Ga0466959_0016818 3300045049 Bacteria 5352
97 Ga0495585_0059730 3300046492 Bacteria 2100
98 Ga0495606_0000111 3300046507 Bacteria 138144
99 Ga0495606_0004394 3300046507 Bacteria 14122
100 Ga0495625_0146783 3300046660 Bacteria 1588
101 Ga0495658_0120429 3300046683 Bacteria 1587
102 Ga0495604_0071907 3300047317 Bacteria 2615
103 Ga0495686_0002840 3300047472 Bacteria 15644
104 Ga0496100_0366723 3300048903 Bacteria 1091
105 Ga0496101_0067719 3300048904 Bacteria 2608
106 Ga0496106_0006915 3300048909 Bacteria 8392
107 Ga0496110_0179639 3300048913 Bacteria 1922
108 Ga0496114_0010333 3300048917 Bacteria 7426
109 Ga0496124_0103523 3300048927 Bacteria 2303
110 Ga0501031_0004852 3300049568 Bacteria 8742
111 Ga0501032_0000164 3300049569 Bacteria 54049
112 Ga0501032_0016232 3300049569 Bacteria 5238
113 Ga0501033_0002793 3300049570 Bacteria 14635
114 Ga0501033_0155401 3300049570 Bacteria 1648
115 Ga0501034_0012548 3300049571 Bacteria 8748
116 Ga0501034_0033829 3300049571 Bacteria 5181
117 Ga0501034_0463410 3300049571 Bacteria 1184
118 Ga0501036_0014280 3300049572 Bacteria 6608
119 Ga0501036_0065823 3300049572 Bacteria 3066
120 Ga0501037_0000162 3300049573 Bacteria 62629
121 Ga0501037_0140426 3300049573 Bacteria 1729
122 Ga0501037_0220986 3300049573 Bacteria 1333
123 Ga0501038_0004302 3300049574 Bacteria 13236
124 Ga0501038_0027556 3300049574 Bacteria 5054
125 Ga0501038_0043738 3300049574 Bacteria 3893
126 Ga0501039_0001258 3300049575 Bacteria 18515
127 Ga0501039_0012062 3300049575 Bacteria 6588
128 Ga0501040_0020897 3300049576 Bacteria 4364
129 Ga0501042_0002499 3300049578 Bacteria 11318
130 Ga0501043_0017052 3300049579 Bacteria 5694
131 Ga0501046_0001169 3300049580 Bacteria 25531
132 Ga0501047_0057524 3300049581 Bacteria 3759
133 Ga0501048_0003530 3300049582 Bacteria 11887
134 Ga0501068_0000728 3300049584 Bacteria 16856
135 Ga0501035_0000199 3300049822 Bacteria 73522
136 Ga0501035_0020930 3300049822 Bacteria 6010
137 Ga0501035_0331194 3300049822 Bacteria 1277
138 Ga0501044_0000682 3300049823 Bacteria 41022
139 Ga0501044_0000973 3300049823 Bacteria 34417
140 Ga0501044_0051160 3300049823 Bacteria 4260
141 Ga0501044_0090329 3300049823 Bacteria 3090
142 Ga0501045_0016076 3300049824 Bacteria 5309
143 nmdc:mga03n38_35648_c1 3300050490 Bacteria 2133
144 nmdc:mga00v17_12669_c1 3300050491 Bacteria 4657
145 nmdc:mga0yw44_141189_c1 3300050492 Bacteria 1566
146 nmdc:mga0k408_11015_c1 3300050493 Bacteria 4910
147 nmdc:mga0k408_166977_c1 3300050493 Bacteria 1312
148 nmdc:mga07m45_153897_c1 3300050496 Bacteria 1334
149 nmdc:mga05p37_84066_c1 3300050507 Bacteria 3921
150 nmdc:mga08y16_78_c1 3300050511 Bacteria 82210
151 Ga0500646_0056063 3300053090 Bacteria 1148
152 Ga0500650_0162317 3300053098 Bacteria 1030
153 Ga0500555_048939 3300053103 Bacteria 1160
154 Ga0500655_011886 3300053133 Bacteria 1581
155 Ga0500568_0070448 3300053139 Bacteria 1339
156 Ga0500604_0001431 3300053151 Bacteria 6664
157 Ga0500645_004171 3300053730 Bacteria 5629

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048903 Ga0496100_0366723 Ga0496100_0366723_31_834 233
2 3300048904 Ga0496101_0067719 Ga0496101_0067719_1736_2557 239
3 3300048913 Ga0496110_0179639 Ga0496110_0179639_947_1882 239
4 3300035695 Ga0373927_0024352 Ga0373927_0024352_1074_2030 253
5 3300037068 Ga0373925_0137746 Ga0373925_0137746_401_1357 253
6 3300046683 Ga0495658_0120429 Ga0495658_0120429_179_1135 253
7 3300028794 Ga0307515_10000058 Ga0307515_1000005847 256
8 3300031344 Ga0265316_10000180 Ga0265316_1000018012 266
9 3300042876 Ga0451577_0008808 Ga0451577_0008808_254_1204 266
10 3300044712 Ga0453684_0305484 Ga0453684_0305484_166_1116 266
11 3300031456 Ga0307513_10054037 Ga0307513_100540374 268
12 3300031456 Ga0307513_10160555 Ga0307513_101605552 270
13 3300042134 Ga0450898_008393 Ga0450898_008393_659_1582 274
14 3300053139 Ga0500568_0070448 Ga0500568_0070448_136_1059 274
15 iso_pu_bacteria 2871451962 2871457979 274
16 3300005366 Ga0070659_100191389 Ga0070659_1001913892 275
17 3300005467 Ga0070706_100077192 Ga0070706_1000771923 275
18 3300005536 Ga0070697_100291820 Ga0070697_1002918202 275
19 3300025917 Ga0207660_10154088 Ga0207660_101540881 275
20 3300025919 Ga0207657_10248237 Ga0207657_102482372 275
21 3300037312 Ga0395899_0000127 Ga0395899_0000127_13133_14059 275
22 3300037418 Ga0395900_0000846 Ga0395900_0000846_26707_27633 275
23 3300038443 Ga0395901_0000730 Ga0395901_0000730_23453_24379 275
24 3300046507 Ga0495606_0004394 Ga0495606_0004394_7155_8081 275
25 3300049568 Ga0501031_0004852 Ga0501031_0004852_1748_2674 275
26 3300049569 Ga0501032_0000164 Ga0501032_0000164_10857_11783 275
27 3300049569 Ga0501032_0016232 Ga0501032_0016232_1506_2432 275
28 3300049570 Ga0501033_0002793 Ga0501033_0002793_12477_13403 275
29 3300049570 Ga0501033_0155401 Ga0501033_0155401_329_1255 275
30 3300049571 Ga0501034_0012548 Ga0501034_0012548_5978_6904 275
31 3300049571 Ga0501034_0033829 Ga0501034_0033829_3584_4510 275
32 3300049572 Ga0501036_0014280 Ga0501036_0014280_3461_4387 275
33 3300049572 Ga0501036_0065823 Ga0501036_0065823_1034_1960 275
34 3300049573 Ga0501037_0000162 Ga0501037_0000162_4790_5716 275
35 3300049573 Ga0501037_0140426 Ga0501037_0140426_11_937 275
36 3300049573 Ga0501037_0220986 Ga0501037_0220986_79_1005 275
37 3300049574 Ga0501038_0004302 Ga0501038_0004302_1066_1992 275
38 3300049574 Ga0501038_0027556 Ga0501038_0027556_1517_2443 275
39 3300049574 Ga0501038_0043738 Ga0501038_0043738_718_1644 275
40 3300049575 Ga0501039_0001258 Ga0501039_0001258_16790_17716 275
41 3300049575 Ga0501039_0012062 Ga0501039_0012062_5345_6271 275
42 3300049576 Ga0501040_0020897 Ga0501040_0020897_394_1320 275
43 3300049578 Ga0501042_0002499 Ga0501042_0002499_9079_10005 275
44 3300049579 Ga0501043_0017052 Ga0501043_0017052_2312_3238 275
45 3300049580 Ga0501046_0001169 Ga0501046_0001169_24060_24986 275
46 3300049581 Ga0501047_0057524 Ga0501047_0057524_1263_2189 275
47 3300049582 Ga0501048_0003530 Ga0501048_0003530_5715_6641 275
48 3300049584 Ga0501068_0000728 Ga0501068_0000728_12586_13512 275
49 3300049822 Ga0501035_0000199 Ga0501035_0000199_39912_40838 275
50 3300049822 Ga0501035_0020930 Ga0501035_0020930_381_1307 275
51 3300049822 Ga0501035_0331194 Ga0501035_0331194_172_1098 275
52 3300049823 Ga0501044_0000682 Ga0501044_0000682_26287_27213 275
53 3300049823 Ga0501044_0000973 Ga0501044_0000973_2682_3608 275
54 3300049823 Ga0501044_0051160 Ga0501044_0051160_3019_3945 275
55 3300049823 Ga0501044_0090329 Ga0501044_0090329_1058_1984 275
56 3300049824 Ga0501045_0016076 Ga0501045_0016076_3584_4510 275
57 3300037312 Ga0395899_0001910 Ga0395899_0001910_12828_13757 276
58 3300037312 Ga0395899_0017376 Ga0395899_0017376_4398_5327 276
59 3300037418 Ga0395900_0250804 Ga0395900_0250804_735_1664 276
60 3300038443 Ga0395901_0012106 Ga0395901_0012106_5071_6000 276
61 3300009553 Ga0105249_10258490 Ga0105249_102584902 277
62 3300013306 Ga0163162_10204803 Ga0163162_102048032 277
63 3300014497 Ga0182008_10004515 Ga0182008_100045155 277
64 3300015261 Ga0182006_1019892 Ga0182006_10198922 277
65 3300015262 Ga0182007_10000519 Ga0182007_1000051915 277
66 3300015265 Ga0182005_1010061 Ga0182005_10100612 277
67 3300025923 Ga0207681_10145092 Ga0207681_101450922 277
68 3300029957 Ga0265324_10017904 Ga0265324_100179043 277
69 3300031649 Ga0307514_10000662 Ga0307514_1000066233 277
70 3300037471 Ga0395905_0009434 Ga0395905_0009434_6828_7796 277
71 3300037471 Ga0395905_0115701 Ga0395905_0115701_134_1075 277
72 3300042014 Ga0439457_009268 Ga0439457_009268_320_1294 277
73 3300042131 Ga0450894_008410 Ga0450894_008410_20_997 277
74 3300042876 Ga0451577_0010621 Ga0451577_0010621_834_1778 277
75 3300005467 Ga0070706_100096404 Ga0070706_1000964042 278
76 3300005548 Ga0070665_100089663 Ga0070665_1000896632 278
77 3300006028 Ga0070717_10194141 Ga0070717_101941412 278
78 3300009094 Ga0111539_10000041 Ga0111539_1000004199 278
79 3300009545 Ga0105237_10026238 Ga0105237_100262382 278
80 3300014969 Ga0157376_10020286 Ga0157376_100202862 278
81 3300021361 Ga0213872_10105523 Ga0213872_101055231 278
82 3300025261 Ga0209233_1013782 Ga0209233_10137822 278
83 3300025303 Ga0209051_1001668 Ga0209051_100166819 278
84 3300025303 Ga0209051_1009722 Ga0209051_10097225 278
85 3300025935 Ga0207709_10037691 Ga0207709_100376913 278
86 3300027907 Ga0207428_10000158 Ga0207428_1000015874 278
87 3300028379 Ga0268266_10063001 Ga0268266_100630013 278
88 3300031456 Ga0307513_10103572 Ga0307513_101035722 278
89 3300031649 Ga0307514_10000567 Ga0307514_1000056718 278
90 3300032002 Ga0307416_100009767 Ga0307416_1000097675 278
91 3300034818 Ga0373950_0000897 Ga0373950_0000897_1777_2742 278
92 3300035691 Ga0373931_0001128 Ga0373931_0001128_2675_3622 278
93 3300037312 Ga0395899_0004632 Ga0395899_0004632_2560_3498 278
94 3300037418 Ga0395900_0024621 Ga0395900_0024621_4907_5845 278
95 3300037471 Ga0395905_0007918 Ga0395905_0007918_9338_10288 278
96 3300037471 Ga0395905_0036095 Ga0395905_0036095_3458_4396 278
97 3300039447 Ga0436361_1010349 Ga0436361_1010349_547_1503 278
98 3300041452 Ga0451793_0927364 Ga0451793_0927364_84_1028 278
99 3300044656 Ga0466969_0001101 Ga0466969_0001101_13438_14379 278
100 3300044683 Ga0466965_0005860 Ga0466965_0005860_3948_4886 278
101 3300044684 Ga0466966_0012826 Ga0466966_0012826_4184_5122 278
102 3300044693 Ga0466961_0027796 Ga0466961_0027796_2509_3450 278
103 3300044765 Ga0466970_0017344 Ga0466970_0017344_711_1652 278
104 3300044901 Ga0466960_0005442 Ga0466960_0005442_3453_4400 278
105 3300045049 Ga0466959_0016818 Ga0466959_0016818_4251_5192 278
106 3300046492 Ga0495585_0059730 Ga0495585_0059730_557_1504 278
107 3300046507 Ga0495606_0000111 Ga0495606_0000111_3981_4988 278
108 3300046660 Ga0495625_0146783 Ga0495625_0146783_370_1317 278
109 3300047317 Ga0495604_0071907 Ga0495604_0071907_391_1338 278
110 3300047472 Ga0495686_0002840 Ga0495686_0002840_3239_4183 278
111 3300048909 Ga0496106_0006915 Ga0496106_0006915_4936_5880 278
112 3300048917 Ga0496114_0010333 Ga0496114_0010333_20_958 278
113 3300048927 Ga0496124_0103523 Ga0496124_0103523_752_1741 278
114 3300049571 Ga0501034_0463410 Ga0501034_0463410_24_962 278
115 3300050511 nmdc:mga08y16_78_c1 nmdc:mga08y16_78_c1_12913_13872 278
116 3300053730 Ga0500645_004171 Ga0500645_004171_1364_2308 278
117 3300005617 Ga0068859_100467806 Ga0068859_1004678062 279
118 3300006038 Ga0075365_10118400 Ga0075365_101184003 279
119 3300006048 Ga0075363_100018826 Ga0075363_1000188265 279
120 3300006051 Ga0075364_10038848 Ga0075364_100388484 279
121 3300006177 Ga0075362_10064089 Ga0075362_100640893 279
122 3300006178 Ga0075367_10015928 Ga0075367_100159283 279
123 3300006195 Ga0075366_10029333 Ga0075366_100293334 279
124 3300006195 Ga0075366_10124966 Ga0075366_101249662 279
125 3300006353 Ga0075370_10012638 Ga0075370_100126382 279
126 3300014326 Ga0157380_10292002 Ga0157380_102920022 279
127 3300030521 Ga0307511_10001681 Ga0307511_1000168118 279
128 3300044683 Ga0466965_0053222 Ga0466965_0053222_945_1892 279
129 3300044901 Ga0466960_0084933 Ga0466960_0084933_228_1175 279
130 3300050490 nmdc:mga03n38_35648_c1 nmdc:mga03n38_35648_c1_668_1606 279
131 3300050492 nmdc:mga0yw44_141189_c1 nmdc:mga0yw44_141189_c1_468_1406 279
132 3300050493 nmdc:mga0k408_166977_c1 nmdc:mga0k408_166977_c1_209_1147 279
133 3300050496 nmdc:mga07m45_153897_c1 nmdc:mga07m45_153897_c1_219_1157 279
134 3300053090 Ga0500646_0056063 Ga0500646_0056063_175_1116 279
135 3300053098 Ga0500650_0162317 Ga0500650_0162317_50_991 279
136 3300053103 Ga0500555_048939 Ga0500555_048939_209_1150 279
137 3300053133 Ga0500655_011886 Ga0500655_011886_32_973 279
138 3300053151 Ga0500604_0001431 Ga0500604_0001431_11_952 279
139 3300006051 Ga0075364_10006476 Ga0075364_100064761 281
140 3300050491 nmdc:mga00v17_12669_c1 nmdc:mga00v17_12669_c1_2849_3796 281
141 3300003323 rootH1_10030521 rootH1_100305213 282
142 3300003323 rootH1_10049609 rootH1_100496092 282
143 3300003759 Ga0055525_1000004 Ga0055525_1000004715 282
144 3300006195 Ga0075366_10014104 Ga0075366_100141043 282
145 3300006944 Ga0099823_1000014 Ga0099823_10000144 282
146 3300009147 Ga0114129_10086154 Ga0114129_100861542 282
147 3300021361 Ga0213872_10000012 Ga0213872_1000001271 282
148 3300025230 Ga0209563_100013 Ga0209563_100013717 282
149 3300025273 Ga0209673_1013580 Ga0209673_10135803 282
150 3300025299 Ga0209256_1001895 Ga0209256_100189511 282
151 3300027296 Ga0209389_1000720 Ga0209389_100072011 282
152 3300028794 Ga0307515_10000283 Ga0307515_1000028355 282
153 3300028794 Ga0307515_10033875 Ga0307515_100338756 282
154 3300031548 Ga0307408_100351881 Ga0307408_1003518811 282
155 3300039447 Ga0436361_0351372 Ga0436361_0351372_98347_99303 282
156 3300042004 Ga0439445_0026698 Ga0439445_0026698_440_1399 282
157 3300050493 nmdc:mga0k408_11015_c1 nmdc:mga0k408_11015_c1_1912_2868 282
158 3300050507 nmdc:mga05p37_84066_c1 nmdc:mga05p37_84066_c1_2186_3142 282

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03466

LysR_substrate

LysR substrate binding domain

120

326

0.97

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

35

96

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
5z4y-assembly1.cif.gz_B crystal structure of pacysb ntd domain with space group p4 0.966 1 74
5z4z-assembly1.cif.gz_A crystal structure of pacysb ntd domain with space group c2 0.9622 1 74
5z4z-assembly2.cif.gz_C-2 crystal structure of pacysb ntd domain with space group c2 0.9614 1 74
5z50-assembly1.cif.gz_B crystal structure of pacysb regulatory domain 0.9287 75 280
4ihs-assembly3.cif.gz_C crystal structure of benm_dbd/catb site 1 dna complex 0.9106 1 74
ID Description Score Start End Superfamily
af_Q47083_1_90_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9772 1 74 1.10.10.10
5z4yA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9692 1 74 1.10.10.10
5z4zB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9616 1 74 1.10.10.10
4gwoA01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9524 75 279 3.40.190.10
af_P0A8R9_1_82_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9374 1 73 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A0R2V5G1-F1-model_v4 LysR family transcriptional regulator 0.9194 75 277 GO:0000976
GO:0006355
GO:0019344
AF-A0A520C3K9-F1-model_v4 Transcriptional regulator 0.8712 64 276 GO:0000976
GO:0006355
GO:0019344
AF-C0BAF0-F1-model_v4 LysR substrate binding domain protein 0.8696 75 262 GO:0000976
GO:0006355
AF-A0A0R2V5G1-F1-model_v4 LysR family transcriptional regulator 0.8432 75 277 GO:0000976
GO:0006355
GO:0019344
AF-A0A415MBL4-F1-model_v4 LysR substrate-binding domain-containing protein 0.8417 75 258 GO:0005829
GO:0006355

Feature Viewer

pLDDT pTM Quality
88.79 0.73 High
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Predicted Structure (AlphaFold2)

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