F228481

General Info

Members Datasets Scaffolds Average Seq Length
157 112 314 278

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2630968484|2631984585
Length 329
Sequence HNIAALNTSRQLNAGSNSAAKNMEKLSSGLRINRAGDDAAGLAISEKMRSQIRGLDMASKNAQDGISLIQTSEGALNETHSILQRMSELATQAANDTNTDSDRSELQKEMDQLASEVTRISTDTEFNTKKLLDGTAQNLTFQIGANEGQTMSLSINKMDSESLKVGTTYTVSGDQNTLTATDGSTATWADEEKDGTTGEVTKAAGYYDDKGKVVASEKLAADSKVTKGIDISSSAKAASSALTTIKTAIDTVSSERAKLGAVQNRLEHTINNLGTSSENLTSAESRIRDVDMASEMMEYTKNNILTQASQAMLAQANQQPQQVLQLLKG

Samples

Sample ID Description Type Environment
1 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
2 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
5 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
6 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
7 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
8 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
9 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
10 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
11 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
12 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
13 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
14 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
15 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
16 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
18 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
19 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
20 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
21 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
22 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
23 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
24 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
25 3300041454 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaT Metatranscriptome Rhizoplane
26 3300041455 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaT Metatranscriptome Rhizoplane
27 3300041461 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaT Metatranscriptome Rhizoplane
28 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
29 3300041508 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaT Metatranscriptome Unclassified
30 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
31 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
32 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
33 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
34 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
35 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
36 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
37 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
38 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
39 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
40 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
41 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
42 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
43 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
44 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
45 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
46 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
47 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
48 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
49 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
50 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
51 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
52 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
53 3300059490 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 7R_CD_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
54 3300059503 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 21R_SD_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
55 3300059510 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 55R_CD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
56 3300059511 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 56R_CD_T2_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
57 3300059512 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 57R_AW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
58 3300059513 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 59R_AW_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
59 3300059623 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 66R_SW_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
60 3300059624 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 146R_CW_T3_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
61 3300059640 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 8R_CD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300059642 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 10R_AW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
63 3300059647 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 43R_SW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
64 3300059649 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 68R_SW_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
65 3300059654 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 148R_CW_T3_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
66 3300059658 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 178R_AW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
67 3300060344 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 36R_AW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
68 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
69 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
70 2630968484 Bacillus methylotrophicus KACC 13105 Isolate Rhizosphere
71 2510917027 Brevibacillus sp. CF112 Isolate Rhizosphere
72 2511231119 Bacillus velezensis CAU B946 Isolate Rhizosphere
73 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
74 2545555800 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
75 2554235283 Bacillus safensis VK Isolate Rhizosphere
76 2576861599 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
77 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
78 2643221735 Bacillus sp. Root920 Isolate Unclassified
79 2648501850 Bacillus amyloliquefaciens RHNK22 Isolate Rhizosphere
80 2671180844 Bacillus amyloliquefaciens Bs006 Isolate Unclassified
81 2684623153 Bacillus pumilus SH-B9 Isolate Unclassified
82 2695420354 Bacillus sp. Co1-6 Isolate Unclassified
83 2716884898 Bacillus methylotrophicus FKM10 Isolate Rhizosphere
84 2738541299 Paenisporosarcina sp. OV554 Isolate Unclassified
85 2808606399 Bacillus sp. SJZ110 Isolate Rhizosphere
86 2818991459 Paenibacillus sp. 597 Isolate Unclassified
87 2823526263 Bacillus altitudinis P-10 Isolate Unclassified
88 2857460504 Brevibacillus sp. R-74223 Isolate Unclassified
89 2857465823 Brevibacillus sp. R-74266 Isolate Unclassified
90 2857604169 Domibacillus sp. R-71921 Isolate Unclassified
91 2857609550 Domibacillus sp. R-71929 Isolate Unclassified
92 2877768649 Bacillus amyloliquefaciens Y14 Isolate Rhizosphere
93 2880169592 Bacillus velezensis T20E-257 Isolate Unclassified
94 2881644220 Siminovitchia terrae LMG 29736 Isolate Rhizosphere
95 2897109615 Bacillus amyloliquefaciens YP6 Isolate Unclassified
96 2898907183 Brevibacillus sp. SYP-B805 Isolate Rhizosphere
97 2904560550 Bacillus velezensis 1780 Isolate Rhizosphere
98 2908665501 Bacillus pumilus 1391 Isolate Rhizosphere
99 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
100 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
101 2919093281 Bacillus safensis 1383 Isolate Rhizosphere
102 2919726948 Bacillus pumilus 4489 Isolate Unclassified
103 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified
104 2954773129 Bacillus sp. TBS-096 Isolate Rhizosphere
105 2962290636 Bacillus subtilis TLO3 Isolate Rhizosphere
106 2964375228 Anaerobacillus alkaliphilus B16-10 Isolate Rhizosphere
107 2969141011 Bacillus velezensis MH25 Isolate Unclassified
108 2971893375 Bacillus sp. HNA3 Isolate Rhizosphere
109 3006879489 Bacillus atrophaeus UCMB-5137 Isolate Rhizosphere
110 8022630665 Bacillus sp. PW192 Isolate Rhizosphere
111 8051952484 Bacillus amyloliquefaciens K2 Isolate Rhizosphere
112 8052174270 Bacillus velezensis CH13 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 36.94
Metatranscriptomes 30.57
Isolates 32.48

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.18
Nodule 0.64
Rhizoplane 4.46
Rhizosphere 78.34
Stem 0
Stem Tuber 0
Unclassified 5.1

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10002164 3300003187 Bacteria 12179
2 Ga0055532_1000541 3300003758 Bacteria 16217
3 Ga0070689_100066460 3300005340 Bacteria 2809
4 Ga0070679_100093197 3300005530 Bacteria 2999
5 Ga0070679_100300213 3300005530 Bacteria 1556
6 Ga0070686_100012168 3300005544 Bacteria 4895
7 Ga0070704_100308128 3300005549 Bacteria 1322
8 Ga0075428_100070332 3300006844 Bacteria 3826
9 Ga0075428_100296701 3300006844 Bacteria 1738
10 Ga0157369_10363355 3300013105 Bacteria 1503
11 Ga0157372_10592137 3300013307 Bacteria 1293
12 Ga0163163_10995047 3300014325 Bacteria 902
13 Ga0197907_11422926 3300020069 Bacteria 970
14 Ga0206352_11100778 3300020078 Unclassified 966
15 Ga0206354_11127229 3300020081 Bacteria 1546
16 Ga0209147_100101 3300025229 Bacteria 161976
17 Ga0209147_103881 3300025229 Bacteria 2691
18 Ga0209025_1000599 3300025294 Bacteria 65048
19 Ga0207670_10227720 3300025936 Bacteria 1430
20 Ga0316576_10022483 3300031727 Bacteria 4380
21 Ga0307406_10433995 3300031901 Bacteria 1050
22 Ga0316593_10018268 3300032168 Bacteria 2153
23 Ga0316593_10061189 3300032168 Bacteria 1288
24 Ga0316593_10075641 3300032168 Archaea 1169
25 Ga0316593_10094985 3300032168 Bacteria 1052
26 Ga0316593_10097291 3300032168 Bacteria 1041
27 Ga0316592_1025760 3300033524 Unclassified 1268
28 Ga0316592_1026944 3300033524 Bacteria 1242
29 Ga0316592_1029704 3300033524 Bacteria 1186
30 Ga0316592_1033881 3300033524 Unclassified 1117
31 Ga0316592_1037279 3300033524 Bacteria 1070
32 Ga0316588_1009455 3300033528 Bacteria 2034
33 Ga0316588_1027619 3300033528 Bacteria 1320
34 Ga0316588_1027726 3300033528 Bacteria 1318
35 Ga0316588_1033180 3300033528 Unclassified 1217
36 Ga0316588_1037764 3300033528 Bacteria 1149
37 Ga0316588_1040198 3300033528 Bacteria 1116
38 Ga0316587_1017706 3300033529 Bacteria 1196
39 Ga0316587_1031385 3300033529 Bacteria 939
40 Ga0316596_1013026 3300033541 Bacteria 2051
41 Ga0316596_1052441 3300033541 Unclassified 1081
42 Ga0316596_1054972 3300033541 Bacteria 1057
43 Ga0316596_1059080 3300033541 Bacteria 1022
44 Ga0316596_1067615 3300033541 Bacteria 956
45 Ga0373937_0049031 3300036401 Bacteria 3867
46 Ga0373937_0555747 3300036401 Bacteria 1090
47 Ga0451799_02825 3300041454 Bacteria 1199
48 Ga0451801_02720 3300041455 Bacteria 1310
49 Ga0451805_090920 3300041461 Bacteria 1328
50 Ga0451805_119078 3300041461 Bacteria 1116
51 Ga0451807_0658468 3300041486 Bacteria 1635
52 Ga0451852_04802 3300041508 Bacteria 1243
53 Ga0451852_07530 3300041508 Bacteria 1214
54 Ga0466965_0074471 3300044683 Bacteria 1711
55 Ga0466961_0104866 3300044693 Bacteria 1780
56 Ga0466963_0044333 3300044694 Bacteria 2928
57 Ga0466963_0059835 3300044694 Bacteria 2543
58 Ga0466963_0306467 3300044694 Bacteria 1117
59 Ga0466964_0128968 3300044706 Bacteria 1149
60 Ga0466964_0134459 3300044706 Bacteria 1130
61 Ga0453684_0029682 3300044712 Bacteria 7754
62 Ga0453684_0035155 3300044712 Bacteria 6932
63 Ga0453684_0339880 3300044712 Unclassified 1695
64 Ga0453684_0350664 3300044712 Bacteria 1664
65 Ga0453684_0369493 3300044712 Bacteria 1613
66 Ga0453684_0689251 3300044712 Bacteria 1111
67 Ga0466971_0058833 3300044719 Bacteria 1735
68 Ga0466970_0386683 3300044765 Bacteria 797
69 Ga0466957_0066589 3300044842 Bacteria 2221
70 Ga0466959_0228114 3300045049 Bacteria 1290
71 Ga0451576_0004335 3300045051 Bacteria 18521
72 Ga0451576_0601570 3300045051 Bacteria 1156
73 Ga0466958_0050264 3300045836 Bacteria 2524
74 Ga0466967_0004743 3300045976 Bacteria 9251
75 Ga0466967_0158688 3300045976 Bacteria 2121
76 Ga0466967_0230159 3300045976 Bacteria 1764
77 Ga0466967_0675299 3300045976 Bacteria 1022
78 Ga0495628_0000104 3300046516 Bacteria 68230
79 Ga0495680_0070615 3300047322 Bacteria 2662
80 Ga0495684_0010529 3300047471 Bacteria 7151
81 Ga0496113_0308408 3300048916 Bacteria 1268
82 Ga0496126_0000101 3300048929 Bacteria 201606
83 Ga0501040_0433756 3300049576 Bacteria 945
84 Ga0501042_0101158 3300049578 Unclassified 2073
85 Ga0501046_0461816 3300049580 Bacteria 912
86 Ga0501047_0271578 3300049581 Bacteria 1542
87 Ga0501075_0084924 3300049591 Unclassified 2398
88 Ga0501080_0504693 3300049742 Bacteria 1081
89 Ga0587066_038202 3300059490 Bacteria 892
90 Ga0587080_029097 3300059503 Bacteria 952
91 Ga0587080_035230 3300059503 Bacteria 890
92 Ga0587090_024061 3300059510 Bacteria 974
93 Ga0587091_044482 3300059511 Bacteria 889
94 Ga0587092_029812 3300059512 Bacteria 896
95 Ga0587094_025117 3300059513 Bacteria 891
96 Ga0587101_024382 3300059623 Bacteria 898
97 Ga0587109_045194 3300059624 Bacteria 886
98 Ga0587067_042059 3300059640 Bacteria 892
99 Ga0587069_027464 3300059642 Bacteria 899
100 Ga0587079_046796 3300059647 Bacteria 894
101 Ga0587102_008388 3300059649 Bacteria 982
102 Ga0587110_009107 3300059654 Bacteria 969
103 Ga0587119_017030 3300059658 Bacteria 895
104 Ga0587071_045280 3300060344 Bacteria 894
105 Ga0501082_0172563 3300060353 Bacteria 1880
106 Ga0466962_0142873 3300061719 Bacteria 1159
107 2631984585 2630968484 Bacteria 3876276
108 2511176814 2510917027 Bacteria 5287437
109 2511701257 2511231119 Bacteria 4019861
110 2512640264 2512564013 Bacteria 6286191
111 2545559614 2545555800 Bacteria 4222588
112 2555470079 2554235283 Bacteria 3683090
113 2578930573 2576861599 Bacteria 4217202
114 2601640430 2600255286 Bacteria 5390125
115 2644739534 2643221735 Bacteria 3676263
116 2644739535 2643221735 Bacteria 3676263
117 2651530874 2648501850 Bacteria 3975476
118 2674421738 2671180844 Bacteria 4164150
119 2686996430 2684623153 Bacteria 3878815
120 2695629211 2695420354 Bacteria 3922431
121 2717915086 2716884898 Bacteria 3928789
122 2738840933 2738541299 Bacteria 4020721
123 2809053590 2808606399 Bacteria 4021018
124 2819675550 2818991459 Bacteria 8736032
125 2823527547 2823526263 Bacteria 3765752
126 2823527548 2823526263 Bacteria 3765752
127 2857464516 2857460504 Bacteria 5194327
128 2857471492 2857465823 Bacteria 6772595
129 2857606453 2857604169 Bacteria 5111450
130 2857610066 2857609550 Bacteria 3753890
131 2877772146 2877768649 Bacteria 3957164
132 2880172984 2880169592 Bacteria 3900066
133 2881645699 2881644220 Bacteria 5302661
134 2897113262 2897109615 Bacteria 4009619
135 2898910991 2898907183 Bacteria 4067722
136 2904561585 2904560550 Bacteria 4029838
137 2908666172 2908665501 Bacteria 3678115
138 2908666173 2908665501 Bacteria 3678115
139 2908666174 2908665501 Bacteria 3678115
140 2915597768 2915597211 Bacteria 6475886
141 2915610662 2915606848 Bacteria 6032732
142 2919093634 2919093281 Bacteria 3660974
143 2919093635 2919093281 Bacteria 3660974
144 2919093636 2919093281 Bacteria 3660974
145 2919729457 2919726948 Bacteria 3696050
146 2929189268 2929183550 Bacteria 6377511
147 2954774956 2954773129 Bacteria 3741715
148 2954774957 2954773129 Bacteria 3741715
149 2954774958 2954773129 Bacteria 3741715
150 2962294487 2962290636 Bacteria 4072939
151 2964375945 2964375228 Bacteria 4909004
152 2969144702 2969141011 Bacteria 4118468
153 2971896826 2971893375 Bacteria 3929648
154 3006882969 3006879489 Bacteria 4064221
155 8022631290 8022630665 Bacteria 3886130
156 8051954242 8051952484 Bacteria 3926774
157 8052175675 8052174270 Bacteria 3881265
158 JGI25151J46595_10002164
159 Ga0055532_1000541
160 Ga0070689_100066460
161 Ga0070679_100093197
162 Ga0070679_100300213
163 Ga0070686_100012168
164 Ga0070704_100308128
165 Ga0075428_100070332
166 Ga0075428_100296701
167 Ga0157369_10363355
168 Ga0157372_10592137
169 Ga0163163_10995047
170 Ga0197907_11422926
171 Ga0206352_11100778
172 Ga0206354_11127229
173 Ga0209147_100101
174 Ga0209147_103881
175 Ga0209025_1000599
176 Ga0207670_10227720
177 Ga0316576_10022483
178 Ga0307406_10433995
179 Ga0316593_10018268
180 Ga0316593_10061189
181 Ga0316593_10075641
182 Ga0316593_10094985
183 Ga0316593_10097291
184 Ga0316592_1025760
185 Ga0316592_1026944
186 Ga0316592_1029704
187 Ga0316592_1033881
188 Ga0316592_1037279
189 Ga0316588_1009455
190 Ga0316588_1027619
191 Ga0316588_1027726
192 Ga0316588_1033180
193 Ga0316588_1037764
194 Ga0316588_1040198
195 Ga0316587_1017706
196 Ga0316587_1031385
197 Ga0316596_1013026
198 Ga0316596_1052441
199 Ga0316596_1054972
200 Ga0316596_1059080
201 Ga0316596_1067615
202 Ga0373937_0049031
203 Ga0373937_0555747
204 Ga0451799_02825
205 Ga0451801_02720
206 Ga0451805_090920
207 Ga0451805_119078
208 Ga0451807_0658468
209 Ga0451852_04802
210 Ga0451852_07530
211 Ga0466965_0074471
212 Ga0466961_0104866
213 Ga0466963_0044333
214 Ga0466963_0059835
215 Ga0466963_0306467
216 Ga0466964_0128968
217 Ga0466964_0134459
218 Ga0453684_0029682
219 Ga0453684_0035155
220 Ga0453684_0339880
221 Ga0453684_0350664
222 Ga0453684_0369493
223 Ga0453684_0689251
224 Ga0466971_0058833
225 Ga0466970_0386683
226 Ga0466957_0066589
227 Ga0466959_0228114
228 Ga0451576_0004335
229 Ga0451576_0601570
230 Ga0466958_0050264
231 Ga0466967_0004743
232 Ga0466967_0158688
233 Ga0466967_0230159
234 Ga0466967_0675299
235 Ga0495628_0000104
236 Ga0495680_0070615
237 Ga0495684_0010529
238 Ga0496113_0308408
239 Ga0496126_0000101
240 Ga0501040_0433756
241 Ga0501042_0101158
242 Ga0501046_0461816
243 Ga0501047_0271578
244 Ga0501075_0084924
245 Ga0501080_0504693
246 Ga0587066_038202
247 Ga0587080_029097
248 Ga0587080_035230
249 Ga0587090_024061
250 Ga0587091_044482
251 Ga0587092_029812
252 Ga0587094_025117
253 Ga0587101_024382
254 Ga0587109_045194
255 Ga0587067_042059
256 Ga0587069_027464
257 Ga0587079_046796
258 Ga0587102_008388
259 Ga0587110_009107
260 Ga0587119_017030
261 Ga0587071_045280
262 Ga0501082_0172563
263 Ga0466962_0142873
264 2631984585
265 2511176814
266 2511701257
267 2512640264
268 2545559614
269 2555470079
270 2578930573
271 2601640430
272 2644739534
273 2644739535
274 2651530874
275 2674421738
276 2686996430
277 2695629211
278 2717915086
279 2738840933
280 2809053590
281 2819675550
282 2823527547
283 2823527548
284 2857464516
285 2857471492
286 2857606453
287 2857610066
288 2877772146
289 2880172984
290 2881645699
291 2897113262
292 2898910991
293 2904561585
294 2908666172
295 2908666173
296 2908666174
297 2915597768
298 2915610662
299 2919093634
300 2919093635
301 2919093636
302 2919729457
303 2929189268
304 2954774956
305 2954774957
306 2954774958
307 2962294487
308 2964375945
309 2969144702
310 2971896826
311 3006882969
312 8022631290
313 8051954242
314 8052175675

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00669

Flagellin_N

Bacterial flagellin N-terminal helical region

1

137

0.99

PF00700

Flagellin_C

Bacterial flagellin C-terminal helical region

242

327

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
6rgv-assembly1.cif.gz_A truncated fljb phase 2 flagellin 0.934 53 172
1io1-assembly1.cif.gz_A crystal structure of f41 fragment of flagellin 0.9203 56 181
5gy2-assembly2.cif.gz_D crystal structure of a complex between bacillus subtilis flagellin and zebrafish toll-like receptor 5 0.9179 55 223
5gy2-assembly2.cif.gz_D crystal structure of a complex between bacillus subtilis flagellin and zebrafish toll-like receptor 5 0.9023 55 223
3v47-assembly1.cif.gz_C crystal structure of the n-terminal fragment of zebrafish tlr5 in complex with salmonella flagellin 0.9008 64 182
ID Description Score Start End Superfamily
4nx9A01 Mainly Alpha;Up-down Bundle;f41 fragment of flagellin, N-terminal domain;f41 fragment of flagellin, N-terminal domain 0.9792 58 224 1.20.1330.10
4nx9A01 Mainly Alpha;Up-down Bundle;f41 fragment of flagellin, N-terminal domain;f41 fragment of flagellin, N-terminal domain 0.9605 58 224 1.20.1330.10
1ucuA02 Mainly Alpha;Up-down Bundle;f41 fragment of flagellin, N-terminal domain;f41 fragment of flagellin, N-terminal domain 0.9242 44 235 1.20.1330.10
5gy2D00 Mainly Alpha;Up-down Bundle;f41 fragment of flagellin, N-terminal domain;f41 fragment of flagellin, N-terminal domain 0.9179 55 223 1.20.1330.10
3v47D01 Mainly Alpha;Up-down Bundle;f41 fragment of flagellin, N-terminal domain;f41 fragment of flagellin, N-terminal domain 0.9143 62 224 1.20.1330.10
ID Description Score Start End GO Terms
AF-J9AG89-F1-model_v4 deleted 0.9193 42 239
AF-J9AG89-F1-model_v4 deleted 0.9104 42 239
AF-A0A6J4TRQ2-F1-model_v4 Flagellin 0.8922 7 236 GO:0005198
GO:0005576
GO:0009288
AF-J8S803-F1-model_v4 deleted 0.8902 44 227
AF-A0A2W6VIE3-F1-model_v4 Flagellin 0.8869 6 161 GO:0005198
GO:0005576
GO:0009288

Map