|
Taxon Oid |
3300041461
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Our Land and Water New Zealand Innovative Agricultural Microbiomes |
| Genome Name Sample Name |
Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaT |
| Sequencing Center |
AgResearch, New Zealand, Mosgeil |
| Img Genome Id |
3300041461 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizoplane |
| Ncbi Genus |
unclassified |
| Ncbi Species |
Our Land and Water New Zealand Innovative Agricultural Microbiomes |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.0.19 |
| Img Submission Id |
239124 |
|
Gold Analysis Project Id
|
Ga0451805
|
| Gold Analysis Project Type |
Metatranscriptome Analysis |
|
Gold Sequencing Project Id
|
Gp0503217
|
|
Gold Study Id
|
Gs0149386
|
| Add Date |
09/09/2020 00:00:00 |
| Assembly Method |
MegaHit v. 1.1.3 |
| Comments |
released by JGI data releasing policy |
| Has Coverage |
False |
| Public Release Date |
03/13/2023 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Graeme Attwood |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Graeme Attwood |
| Contact Email |
[email protected] |
| Contact Name |
Graeme Attwood |
| Is Published |
False |
| Sequencing Method |
Illumina HiSeq 2500 |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metatranscriptome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizoplane |
| Ecosystem Type |
Roots |
| Cultured |
False |
| Elevation In Meters |
263.000000 |
| Geographic Location |
New Zealand: Lincoln, Canterbury |
| Habitat |
Dairy farm pasture |
| Isolation |
Perennial ryegrass root from a dairy farm pasture |
| Isolation Country |
8801 |
| Latitude |
-43.6485 |
| Longitude |
172.344 |
| Sample Collection Date |
2018/3 |
| Host Name |
Diploid perennial ryegrass AR37 One50 |
| Sample Body Site |
Plant-root |
| Genome Size Assembled |
79338688 |
| Gene Count Assembled |
146693 |