F228091

General Info

Members Datasets Scaffolds Average Seq Length
157 106 146 686

Family's Representative Sequence

Representative Sequence 3300046542|Ga0495597_0014244|Ga0495597_0014244_421_2688
Length 755
Sequence MCIEPVGEGAIRVTTGRSGCEGADIDNTDFDEVAPVGGDWAAPLSTGIRPPPSPAALRAWIVRQIARQGARWKLWTPVAFGLGAGTYFVLLREPRVWVAWAMLAAAGLLLAGARRRWPPLAACLVLIACGLGGFAAAKLRVERVKAPVAADAATPQRLEGWVVDVASPGQGGQRLLIAPYRLGELAPEATPIRVRVTLRDGAPIPAPGDAVSLMAVINAPPPPASPGAYDFARDAYFDSVGGVGFALGPSRSWTEPAEPPWRLRLAMKVNRLRWMMTQRIVGVLGPESGGLAAAMTTGQAAYIPQSQVDNLRASGLAHIISISGVHMAIVGGFTFAGLRLLIAAWPWLALRINGKKTAAVVGLAAVLAYLVLSGAPPPAVRAAATASIAFCAVLADRQAISLHSLAVAAFVVLLLQPEAVTQPGFQMSFAATAALVALAGVWPRPVKEINTPWPIRLAQGAGSWLLAGAAISLVAGLATAPFAIQHFNRVSTWGLVSNLLVEPISSLLMMPALAVAALLTPFGLEAGPLRLAGFAIDLTNRIAEAAANAPYAQLIVASAPGWTLPATFLGLLWVCLWRGPLRWLGLPLALAVSLTPRPAAPDAWVSADGAAVAVRRGGEALLLRPDVKLFGAELWSRRRGLAPVESAPARDAAYDCDHQSCAPRPTAPVRLAAAWNLKRPLPPGRLETLCSSAEVAVLRNGFRPGDCAAPLVLTAADFRRGGSAELYRAPDGRWRAVWAEDSRGRRPWTWGLDLR

Samples

Sample ID Description Type Environment
1 2643221574 Brevundimonas sp. Root608 Isolate Unclassified
2 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
3 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
4 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
5 2643221699 Brevundimonas sp. Root1423 Isolate Unclassified
6 2791355048 Caulobacter flavus CGMCC1 15093 Isolate Rhizosphere
7 2843744320 Caulobacter flavus RHGG3 Isolate Unclassified
8 2849560528 Caulobacter zeae 410 Isolate Unclassified
9 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
10 2851153111 Caulobacter radicis 736 Isolate Unclassified
11 2898329390 Caulobacter sp. 602-2 Isolate Rhizosphere
12 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
13 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
14 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
15 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
16 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
17 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
18 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
19 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
20 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
21 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
34 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
35 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
36 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
41 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
42 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
43 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
44 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
46 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
70 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
71 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
72 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
73 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
74 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
75 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
76 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
77 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
78 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
79 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
80 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
81 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
82 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
85 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
86 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
87 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
88 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
89 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
90 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
91 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
92 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
93 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
94 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
95 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
97 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
98 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
99 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
100 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
101 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
102 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
103 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
104 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
105 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
106 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.99
Metatranscriptomes 0
Isolates 7.01

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.01
Nodule 0
Rhizoplane 0.64
Rhizosphere 74.52
Stem 0
Stem Tuber 0
Unclassified 10.83

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055530_10000685 3300003791 Bacteria 28722
2 Ga0055531_10001281 3300003794 Bacteria 18942
3 Ga0055531_10007879 3300003794 Bacteria 5725
4 Ga0065165_1000552 3300005262 Bacteria 56291
5 Ga0070670_100000037 3300005331 Bacteria 156070
6 Ga0070680_100021052 3300005336 Bacteria 5179
7 Ga0070691_10002267 3300005341 Bacteria 8518
8 Ga0070668_100000489 3300005347 Bacteria 26287
9 Ga0070668_100000745 3300005347 Bacteria 22317
10 Ga0070668_100001716 3300005347 Bacteria 15917
11 Ga0070668_100017707 3300005347 Bacteria 5343
12 Ga0070668_100019694 3300005347 Bacteria 5082
13 Ga0070671_100011574 3300005355 Bacteria 7096
14 Ga0070671_100021722 3300005355 Bacteria 5242
15 Ga0070659_100001077 3300005366 Bacteria 19933
16 Ga0070667_100000083 3300005367 Bacteria 118261
17 Ga0070681_10019397 3300005458 Bacteria 6805
18 Ga0070679_100008769 3300005530 Bacteria 9540
19 Ga0068853_100017551 3300005539 Bacteria 5906
20 Ga0070665_100000483 3300005548 Bacteria 57237
21 Ga0070665_100001929 3300005548 Bacteria 23364
22 Ga0070665_100040190 3300005548 Bacteria 4701
23 Ga0068855_100019626 3300005563 Bacteria 8120
24 Ga0068855_100073594 3300005563 Bacteria 3969
25 Ga0068855_100143897 3300005563 Bacteria 2715
26 Ga0068859_100000391 3300005617 Bacteria 43751
27 Ga0068859_100012516 3300005617 Bacteria 8534
28 Ga0068864_100000115 3300005618 Bacteria 79542
29 Ga0068864_100000116 3300005618 Bacteria 79213
30 Ga0068861_100027223 3300005719 Bacteria 4163
31 Ga0068863_100000007 3300005841 Bacteria 257578
32 Ga0068863_100001697 3300005841 Bacteria 21819
33 Ga0068863_100003293 3300005841 Bacteria 15944
34 Ga0068863_100100006 3300005841 Bacteria 2756
35 Ga0068858_100000031 3300005842 Bacteria 143397
36 Ga0068858_100002371 3300005842 Bacteria 19055
37 Ga0068858_100014847 3300005842 Bacteria 7326
38 Ga0068860_100000145 3300005843 Bacteria 115830
39 Ga0068862_100000235 3300005844 Bacteria 61301
40 Ga0075366_10036762 3300006195 Bacteria 2887
41 Ga0068865_100000711 3300006881 Bacteria 18707
42 Ga0097620_100000391 3300006931 Bacteria 43751
43 Ga0097620_100012516 3300006931 Bacteria 8534
44 Ga0105240_10018864 3300009093 Bacteria 9236
45 Ga0105240_10065770 3300009093 Bacteria 4500
46 Ga0105240_10080815 3300009093 Bacteria 3996
47 Ga0105240_10082379 3300009093 Bacteria 3952
48 Ga0105248_10005672 3300009177 Bacteria 13717
49 Ga0105248_10006819 3300009177 Bacteria 12518
50 Ga0105248_10068722 3300009177 Bacteria 3978
51 Ga0157370_10106993 3300013104 Bacteria 2617
52 Ga0163163_10021167 3300014325 Bacteria 6133
53 Ga0157379_10003351 3300014968 Bacteria 13575
54 Ga0157379_10003384 3300014968 Bacteria 13491
55 Ga0157379_10040083 3300014968 Bacteria 4179
56 Ga0213872_10007981 3300021361 Bacteria 5154
57 Ga0209026_1002670 3300025250 Bacteria 6457
58 Ga0209676_1000061 3300025292 Bacteria 332674
59 Ga0209758_1001665 3300025297 Bacteria 25124
60 Ga0209050_1000101 3300025298 Bacteria 230076
61 Ga0209257_1000178 3300025304 Bacteria 160969
62 Ga0209257_1000221 3300025304 Bacteria 134870
63 Ga0209257_1002453 3300025304 Bacteria 18398
64 Ga0207705_10001576 3300025909 Bacteria 18123
65 Ga0207695_10001229 3300025913 Bacteria 43850
66 Ga0207695_10014530 3300025913 Bacteria 9319
67 Ga0207660_10003244 3300025917 Bacteria 10652
68 Ga0207657_10006923 3300025919 Bacteria 11688
69 Ga0207657_10049396 3300025919 Bacteria 3666
70 Ga0207652_10007375 3300025921 Bacteria 8865
71 Ga0207681_10016825 3300025923 Bacteria 4584
72 Ga0207650_10000062 3300025925 Bacteria 149776
73 Ga0207644_10003663 3300025931 Bacteria 9960
74 Ga0207690_10000129 3300025932 Bacteria 62350
75 Ga0207690_10011085 3300025932 Bacteria 5376
76 Ga0207711_10003138 3300025941 Bacteria 14409
77 Ga0207667_10046496 3300025949 Bacteria 4596
78 Ga0207712_10001626 3300025961 Bacteria 15143
79 Ga0207668_10000028 3300025972 Bacteria 125361
80 Ga0207668_10000130 3300025972 Bacteria 53528
81 Ga0207668_10000879 3300025972 Bacteria 18115
82 Ga0207668_10046400 3300025972 Bacteria 2968
83 Ga0207658_10000209 3300025986 Bacteria 61041
84 Ga0207703_10000038 3300026035 Bacteria 175917
85 Ga0207703_10000843 3300026035 Bacteria 30142
86 Ga0207703_10010348 3300026035 Bacteria 7300
87 Ga0207639_10048410 3300026041 Bacteria 3218
88 Ga0207641_10000012 3300026088 Bacteria 375486
89 Ga0207641_10000341 3300026088 Bacteria 56155
90 Ga0207641_10084977 3300026088 Bacteria 2756
91 Ga0207676_10000255 3300026095 Bacteria 46136
92 Ga0207676_10000716 3300026095 Bacteria 26001
93 Ga0207676_10106559 3300026095 Bacteria 2336
94 Ga0268266_10000064 3300028379 Bacteria 249533
95 Ga0268266_10000792 3300028379 Bacteria 42146
96 Ga0268266_10011715 3300028379 Bacteria 7608
97 Ga0268265_10002126 3300028380 Bacteria 15366
98 Ga0268265_10034118 3300028380 Bacteria 3707
99 Ga0268264_10000046 3300028381 Bacteria 364597
100 Ga0268264_10000059 3300028381 Bacteria 306927
101 Ga0307517_10000497 3300028786 Bacteria 67390
102 Ga0307517_10018475 3300028786 Bacteria 9014
103 Ga0265338_10027878 3300028800 Bacteria 5651
104 Ga0265327_10004486 3300031251 Bacteria 12337
105 Ga0307513_10000448 3300031456 Bacteria 59427
106 Ga0307513_10002007 3300031456 Bacteria 28699
107 Ga0307516_10000004 3300031730 Bacteria 367451
108 Ga0307406_10001178 3300031901 Bacteria 14628
109 Ga0307414_10019854 3300032004 Bacteria 4174
110 Ga0373936_0003201 3300035113 Bacteria 6137
111 Ga0373927_0001895 3300035695 Bacteria 15450
112 Ga0373925_0000061 3300037068 Bacteria 117783
113 Ga0395899_0000013 3300037312 Bacteria 510397
114 Ga0395899_0000167 3300037312 Bacteria 100973
115 Ga0395900_0000009 3300037418 Bacteria 476249
116 Ga0395900_0025531 3300037418 Bacteria 6049
117 Ga0395898_0003722 3300037466 Bacteria 16914
118 Ga0395905_0002729 3300037471 Bacteria 19333
119 Ga0395905_0020224 3300037471 Bacteria 6306
120 Ga0395901_0000014 3300038443 Bacteria 375100
121 Ga0395901_0096047 3300038443 Bacteria 3106
122 Ga0436361_0946739 3300039447 Bacteria 11603
123 Ga0495628_0077380 3300046516 Bacteria 2588
124 Ga0495597_0014244 3300046542 Bacteria 3789
125 Ga0495668_0019630 3300046616 Bacteria 3894
126 Ga0495669_0000024 3300046684 Bacteria 113943
127 Ga0495669_0000199 3300046684 Bacteria 36829
128 Ga0495649_0000807 3300046694 Bacteria 25271
129 Ga0495581_0037070 3300047315 Bacteria 2821
130 Ga0495686_0004259 3300047472 Bacteria 11861
131 Ga0496115_0002134 3300048918 Bacteria 14137
132 Ga0496121_0000009 3300048924 Bacteria 836971
133 Ga0496125_0034177 3300048928 Bacteria 4485
134 Ga0501047_0022944 3300049581 Bacteria 5991
135 Ga0501044_0020636 3300049823 Bacteria 7035
136 nmdc:mga07m45_6925_c1 3300050496 Bacteria 5766
137 Ga0500635_0000228 3300053080 Bacteria 24908
138 Ga0500644_0001529 3300053088 Bacteria 6076
139 Ga0500651_0016093 3300053093 Bacteria 4598
140 Ga0500651_0017351 3300053093 Bacteria 4439
141 Ga0500566_0006178 3300053094 Bacteria 7120
142 Ga0500562_001465 3300053108 Bacteria 5825
143 Ga0500614_003306 3300053123 Bacteria 3486
144 Ga0500658_0022329 3300053134 Bacteria 2405
145 Ga0500616_0015165 3300053153 Bacteria 4412
146 Ga0500645_002086 3300053730 Bacteria 9244

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053093 Ga0500651_0017351 Ga0500651_0017351_123_2117 556
2 3300005331 Ga0070670_100000037 Ga0070670_10000003759 577
3 3300005367 Ga0070667_100000083 Ga0070667_10000008359 577
4 3300005548 Ga0070665_100000483 Ga0070665_10000048336 577
5 3300005618 Ga0068864_100000116 Ga0068864_1000001167 577
6 3300005841 Ga0068863_100001697 Ga0068863_1000016979 577
7 3300005842 Ga0068858_100014847 Ga0068858_1000148473 577
8 3300014968 Ga0157379_10003351 Ga0157379_1000335111 577
9 3300025925 Ga0207650_10000062 Ga0207650_1000006231 577
10 3300025961 Ga0207712_10001626 Ga0207712_1000162613 577
11 3300025972 Ga0207668_10000130 Ga0207668_1000013047 577
12 3300025986 Ga0207658_10000209 Ga0207658_1000020962 577
13 3300026035 Ga0207703_10000843 Ga0207703_1000084323 577
14 3300026088 Ga0207641_10000341 Ga0207641_100003413 577
15 3300026095 Ga0207676_10000716 Ga0207676_1000071620 577
16 3300028379 Ga0268266_10011715 Ga0268266_100117155 577
17 3300028381 Ga0268264_10000059 Ga0268264_10000059250 577
18 3300005844 Ga0068862_100000235 Ga0068862_1000002356 578
19 3300005347 Ga0070668_100000489 Ga0070668_10000048920 579
20 3300047315 Ga0495581_0037070 Ga0495581_0037070_18_1919 583
21 3300053134 Ga0500658_0022329 Ga0500658_0022329_63_2027 588
22 iso_pu_bacteria 2643221614 2644084990 590
23 iso_pu_bacteria 2643221661 2644342542 590
24 iso_pu_bacteria 2643221666 2644365842 590
25 3300046684 Ga0495669_0000024 Ga0495669_0000024_73905_76133 596
26 3300038443 Ga0395901_0096047 Ga0395901_0096047_885_2975 598
27 iso_pu_bacteria 2849560528 2849564848 600
28 iso_pu_bacteria 2849573788 2849578143 600
29 iso_pu_bacteria 2851153111 2851154566 600
30 iso_pu_bacteria 2898329390 2898329789 600
31 3300053153 Ga0500616_0015165 Ga0500616_0015165_321_2525 601
32 3300025941 Ga0207711_10003138 Ga0207711_100031389 603
33 iso_pu_bacteria 2843744320 2843748114 604
34 iso_pu_bacteria 2643221574 2643883280 605
35 iso_pu_bacteria 2791355048 2792463297 605
36 3300005366 Ga0070659_100001077 Ga0070659_10000107710 609
37 3300025919 Ga0207657_10049396 Ga0207657_100493963 609
38 3300025932 Ga0207690_10000129 Ga0207690_100001298 609
39 3300005341 Ga0070691_10002267 Ga0070691_100022674 611
40 3300005530 Ga0070679_100008769 Ga0070679_1000087694 611
41 3300025913 Ga0207695_10001229 Ga0207695_1000122928 611
42 3300046516 Ga0495628_0077380 Ga0495628_0077380_403_2451 611
43 3300014968 Ga0157379_10003384 Ga0157379_1000338411 612
44 3300005347 Ga0070668_100001716 Ga0070668_1000017163 613
45 3300005355 Ga0070671_100011574 Ga0070671_1000115743 613
46 3300005617 Ga0068859_100000391 Ga0068859_10000039113 613
47 3300005841 Ga0068863_100003293 Ga0068863_1000032933 613
48 3300005842 Ga0068858_100002371 Ga0068858_1000023714 613
49 3300006931 Ga0097620_100000391 Ga0097620_10000039113 613
50 3300009177 Ga0105248_10006819 Ga0105248_100068199 613
51 3300014325 Ga0163163_10021167 Ga0163163_100211674 613
52 3300025923 Ga0207681_10016825 Ga0207681_100168252 613
53 3300025931 Ga0207644_10003663 Ga0207644_100036633 613
54 3300025972 Ga0207668_10000879 Ga0207668_1000087915 613
55 3300026035 Ga0207703_10010348 Ga0207703_100103483 613
56 3300005563 Ga0068855_100073594 Ga0068855_1000735943 614
57 3300021361 Ga0213872_10007981 Ga0213872_100079813 614
58 3300028379 Ga0268266_10000064 Ga0268266_10000064193 614
59 3300039447 Ga0436361_0946739 Ga0436361_0946739_9255_11366 614
60 3300005842 Ga0068858_100000031 Ga0068858_100000031113 616
61 3300014968 Ga0157379_10040083 Ga0157379_100400833 616
62 3300026035 Ga0207703_10000038 Ga0207703_1000003875 616
63 3300046694 Ga0495649_0000807 Ga0495649_0000807_3813_5963 616
64 3300005347 Ga0070668_100019694 Ga0070668_1000196942 617
65 3300005563 Ga0068855_100143897 Ga0068855_1001438972 617
66 3300028380 Ga0268265_10034118 Ga0268265_100341182 617
67 3300009093 Ga0105240_10065770 Ga0105240_100657702 619
68 3300005347 Ga0070668_100000745 Ga0070668_1000007453 623
69 3300053088 Ga0500644_0001529 Ga0500644_0001529_2286_4376 623
70 3300053093 Ga0500651_0016093 Ga0500651_0016093_688_2778 623
71 3300005843 Ga0068860_100000145 Ga0068860_100000145104 624
72 3300006881 Ga0068865_100000711 Ga0068865_10000071110 624
73 3300028381 Ga0268264_10000046 Ga0268264_10000046153 624
74 3300037312 Ga0395899_0000013 Ga0395899_0000013_216696_218969 624
75 3300005347 Ga0070668_100017707 Ga0070668_1000177073 625
76 3300025972 Ga0207668_10046400 Ga0207668_100464002 625
77 3300028380 Ga0268265_10002126 Ga0268265_100021267 625
78 3300048928 Ga0496125_0034177 Ga0496125_0034177_1579_3684 625
79 3300003794 Ga0055531_10007879 Ga0055531_100078793 626
80 3300025292 Ga0209676_1000061 Ga0209676_100006125 626
81 3300025304 Ga0209257_1000178 Ga0209257_100017840 626
82 3300031456 Ga0307513_10000448 Ga0307513_1000044836 626
83 3300031901 Ga0307406_10001178 Ga0307406_100011783 626
84 3300028786 Ga0307517_10000497 Ga0307517_1000049739 627
85 3300031456 Ga0307513_10002007 Ga0307513_1000200725 627
86 3300037312 Ga0395899_0000167 Ga0395899_0000167_94074_96173 627
87 3300037418 Ga0395900_0000009 Ga0395900_0000009_310205_312304 627
88 3300037466 Ga0395898_0003722 Ga0395898_0003722_1685_3784 627
89 3300037471 Ga0395905_0002729 Ga0395905_0002729_12794_14893 627
90 3300038443 Ga0395901_0000014 Ga0395901_0000014_261410_263509 627
91 iso_pu_bacteria 2643221699 2644547902 630
92 3300031730 Ga0307516_10000004 Ga0307516_10000004358 631
93 3300006195 Ga0075366_10036762 Ga0075366_100367622 632
94 3300050496 nmdc:mga07m45_6925_c1 nmdc:mga07m45_6925_c1_1435_3624 632
95 3300005618 Ga0068864_100000115 Ga0068864_1000001153 633
96 3300005841 Ga0068863_100000007 Ga0068863_100000007173 633
97 3300026088 Ga0207641_10000012 Ga0207641_10000012136 633
98 3300026095 Ga0207676_10000255 Ga0207676_1000025543 633
99 3300037471 Ga0395905_0020224 Ga0395905_0020224_1313_3511 633
100 3300005355 Ga0070671_100021722 Ga0070671_1000217223 636
101 3300035695 Ga0373927_0001895 Ga0373927_0001895_8208_10352 636
102 3300037068 Ga0373925_0000061 Ga0373925_0000061_20882_23026 636
103 3300005262 Ga0065165_1000552 Ga0065165_100055214 637
104 3300049581 Ga0501047_0022944 Ga0501047_0022944_2331_4469 637
105 3300005617 Ga0068859_100012516 Ga0068859_1000125167 640
106 3300005719 Ga0068861_100027223 Ga0068861_1000272232 640
107 3300005841 Ga0068863_100100006 Ga0068863_1001000062 640
108 3300006931 Ga0097620_100012516 Ga0097620_1000125167 640
109 3300026088 Ga0207641_10084977 Ga0207641_100849772 640
110 3300028786 Ga0307517_10018475 Ga0307517_100184752 640
111 3300032004 Ga0307414_10019854 Ga0307414_100198542 640
112 3300005548 Ga0070665_100040190 Ga0070665_1000401902 642
113 3300025913 Ga0207695_10014530 Ga0207695_100145303 642
114 3300005336 Ga0070680_100021052 Ga0070680_1000210522 645
115 3300005458 Ga0070681_10019397 Ga0070681_100193978 645
116 3300005539 Ga0068853_100017551 Ga0068853_1000175513 645
117 3300005548 Ga0070665_100001929 Ga0070665_10000192917 645
118 3300025909 Ga0207705_10001576 Ga0207705_100015762 645
119 3300025917 Ga0207660_10003244 Ga0207660_100032445 645
120 3300025919 Ga0207657_10006923 Ga0207657_100069235 645
121 3300025921 Ga0207652_10007375 Ga0207652_100073755 645
122 3300025932 Ga0207690_10011085 Ga0207690_100110855 645
123 3300025972 Ga0207668_10000028 Ga0207668_1000002883 645
124 3300026041 Ga0207639_10048410 Ga0207639_100484102 645
125 3300013104 Ga0157370_10106993 Ga0157370_101069931 646
126 3300028800 Ga0265338_10027878 Ga0265338_100278784 646
127 3300009177 Ga0105248_10068722 Ga0105248_100687224 648
128 3300047472 Ga0495686_0004259 Ga0495686_0004259_3742_5901 648
129 3300028379 Ga0268266_10000792 Ga0268266_1000079217 649
130 3300031251 Ga0265327_10004486 Ga0265327_1000448611 651
131 3300025304 Ga0209257_1002453 Ga0209257_100245315 652
132 3300037418 Ga0395900_0025531 Ga0395900_0025531_493_2748 652
133 3300048918 Ga0496115_0002134 Ga0496115_0002134_10246_12501 652
134 3300053730 Ga0500645_002086 Ga0500645_002086_1486_3645 652
135 3300005563 Ga0068855_100019626 Ga0068855_1000196265 653
136 3300009177 Ga0105248_10005672 Ga0105248_1000567210 653
137 3300025949 Ga0207667_10046496 Ga0207667_100464963 653
138 3300048924 Ga0496121_0000009 Ga0496121_0000009_643038_645308 653
139 3300009093 Ga0105240_10082379 Ga0105240_100823794 655
140 3300046684 Ga0495669_0000199 Ga0495669_0000199_23998_26244 657
141 3300009093 Ga0105240_10018864 Ga0105240_100188647 660
142 3300009093 Ga0105240_10080815 Ga0105240_100808152 660
143 3300035113 Ga0373936_0003201 Ga0373936_0003201_3633_5888 660
144 3300053108 Ga0500562_001465 Ga0500562_001465_466_2724 660
145 3300026095 Ga0207676_10106559 Ga0207676_101065591 661
146 3300046542 Ga0495597_0014244 Ga0495597_0014244_421_2688 662
147 3300046616 Ga0495668_0019630 Ga0495668_0019630_193_2460 662
148 3300049823 Ga0501044_0020636 Ga0501044_0020636_642_2870 662
149 3300053080 Ga0500635_0000228 Ga0500635_0000228_10070_12337 662
150 3300053094 Ga0500566_0006178 Ga0500566_0006178_1966_4233 662
151 3300053123 Ga0500614_003306 Ga0500614_003306_1181_3448 662
152 3300025250 Ga0209026_1002670 Ga0209026_10026705 671
153 3300003791 Ga0055530_10000685 Ga0055530_1000068513 672
154 3300003794 Ga0055531_10001281 Ga0055531_100012818 672
155 3300025297 Ga0209758_1001665 Ga0209758_100166520 672
156 3300025298 Ga0209050_1000101 Ga0209050_1000101207 672
157 3300025304 Ga0209257_1000221 Ga0209257_100022113 672

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03772

Competence

Competence protein

295

581

0.98

PF13567

DUF4131

Domain of unknown function (DUF4131)

68

251

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
2vb3-assembly1.cif.gz_X crystal structure of ag(i)cusf 0.699 98 191
2vb3-assembly1.cif.gz_X crystal structure of ag(i)cusf 0.6832 98 191
2z6k-assembly1.cif.gz_A crystal structure of full-length human rpa14/32 heterodimer 0.5802 99 214
3e6z-assembly1.cif.gz_X 1.0 a structure of cusf-w44a-cu(ii) residues 10-88 from escherichia coli 0.5736 96 192
2qcp-assembly1.cif.gz_X 1.0 a structure of cusf-ag(i) residues 10-88 from escherichia coli 0.5657 97 192
ID Description Score Start End Superfamily
2vb2X01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Copper binding periplasmic protein CusF 0.6921 98 192 2.40.50.320
2vb2X01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Copper binding periplasmic protein CusF 0.6843 98 192 2.40.50.320
af_A0A1D6Q1B9_1_113_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.6428 98 199 2.40.50.140
af_P9WK97_233_330_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.6184 101 124 2.40.30.10
af_A0A1D6K475_1_143_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.6134 98 199 2.40.50.140
ID Description Score Start End GO Terms
AF-A0A1F8ICQ9-F1-model_v4 deleted 0.8742 41 520
AF-A0A3C0W597-F1-model_v4 Competence protein ComEC 0.8686 317 670 GO:0005886
AF-A0A3C0W597-F1-model_v4 Competence protein ComEC 0.8663 317 670 GO:0005886
AF-A0A2D7ZKC4-F1-model_v4 Competence protein ComEC 0.8641 391 668 GO:0005886
AF-A0A0Q5VE11-F1-model_v4 Competence protein ComEC 0.8639 33 666 GO:0005886

Feature Viewer

pLDDT pTM Quality
72.98 0.68 Medium
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Predicted Structure (AlphaFold2)

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