F226224

General Info

Members Datasets Scaffolds Average Seq Length
157 84 156 259

Family's Representative Sequence

Representative Sequence 3300003320|rootH2_10018002|rootH2_100180022
Length 318
Sequence MPLRPCFLSFLPPPYQLALPTSSPAAEHSLRPNALFSSFAALFLQAAIEPHSAPFTYLYALMEYALITGASKGIGRAIARELAGRGFNVLLVARSEDLLQQLATEITSRYKVQADFLALDLSTAEAPQNVCDWCRARGYDIVALINNAGYGLSGSFEKYGLPDHLNMMQLNMSTMVGMTRLFLPELRKHKRAYILNIASSAAYQAVPKLTLYAATKAFVLAFSRGLHQELRETAVSVTCVSPGATDTDFPNRAQLGEKGMKAAEKFNMPADTVASLAVKGMLAGKAEVITGFINKLGAAMAWLLPKTMVERTAMKIYE

Samples

Sample ID Description Type Environment
1 2738541283 Pedobacter sp. OK701 Isolate Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
10 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
13 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
14 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
15 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
16 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
17 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
18 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
19 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
20 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
21 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
22 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
23 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
24 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
25 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
26 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
27 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
28 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
29 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
30 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
31 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
32 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
33 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
34 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
48 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
49 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
50 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
51 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
52 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
53 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
54 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
55 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
56 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
57 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
58 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
59 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
60 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
61 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
62 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
63 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
64 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
65 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
66 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
67 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
68 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
69 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
70 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
71 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
72 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
73 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
74 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
75 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
77 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
78 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
79 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
80 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
81 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
82 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
83 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
84 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.36
Metatranscriptomes 0
Isolates 0.64

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.46
Nodule 0
Rhizoplane 0.64
Rhizosphere 83.44
Stem 0
Stem Tuber 0
Unclassified 11.46

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10018002 3300003320 Bacteria 4432
2 rootH2_10207326 3300003320 Unclassified 1740
3 rootL2_10025920 3300003322 Bacteria 7631
4 rootL2_10190348 3300003322 Bacteria 2419
5 rootL2_10208347 3300003322 Bacteria 2612
6 rootL2_10257940 3300003322 Bacteria 2683
7 rootH1_10134117 3300003323 Bacteria 3183
8 Ga0065714_10017395 3300005288 Bacteria 2015
9 Ga0065714_10078912 3300005288 Bacteria 2558
10 Ga0070683_100023116 3300005329 Bacteria 5558
11 Ga0070666_10008860 3300005335 Bacteria 6256
12 Ga0070668_100266058 3300005347 Bacteria 1427
13 Ga0068853_100010430 3300005539 Bacteria 7519
14 Ga0068853_100013961 3300005539 Bacteria 6570
15 Ga0068853_100055804 3300005539 Bacteria 3405
16 Ga0068853_100275369 3300005539 Bacteria 1550
17 Ga0070665_100000003 3300005548 Bacteria 811857
18 Ga0068855_100001248 3300005563 Bacteria 31576
19 Ga0068855_100008829 3300005563 Bacteria 12180
20 Ga0068855_100016969 3300005563 Bacteria 8757
21 Ga0068857_100023929 3300005577 Bacteria 5376
22 Ga0068854_100089397 3300005578 Bacteria 2289
23 Ga0068854_100472190 3300005578 Bacteria 1052
24 Ga0068852_100051097 3300005616 Bacteria 3545
25 Ga0068852_100221676 3300005616 Bacteria 1799
26 Ga0068870_10022714 3300005840 Bacteria 3085
27 Ga0068860_100062202 3300005843 Bacteria 3547
28 Ga0068860_100245577 3300005843 Bacteria 1742
29 Ga0081540_1007707 3300005983 Bacteria 7631
30 Ga0070712_100121016 3300006175 Bacteria 1969
31 Ga0105240_10000033 3300009093 Bacteria 279600
32 Ga0105240_10000483 3300009093 Bacteria 73606
33 Ga0105240_10003606 3300009093 Bacteria 23974
34 Ga0105240_10010115 3300009093 Bacteria 13274
35 Ga0105240_10015839 3300009093 Bacteria 10229
36 Ga0105240_10031923 3300009093 Bacteria 6823
37 Ga0105240_10087974 3300009093 Bacteria 3802
38 Ga0105240_10134023 3300009093 Bacteria 2967
39 Ga0105240_10228172 3300009093 Bacteria 2166
40 Ga0105240_10284707 3300009093 Bacteria 1897
41 Ga0105241_10004518 3300009174 Bacteria 10288
42 Ga0105241_10084470 3300009174 Bacteria 2492
43 Ga0105237_10000113 3300009545 Bacteria 114034
44 Ga0105237_10009568 3300009545 Bacteria 10376
45 Ga0105237_10013414 3300009545 Bacteria 8596
46 Ga0105237_10020133 3300009545 Bacteria 6887
47 Ga0105237_10025144 3300009545 Bacteria 6091
48 Ga0105237_10029470 3300009545 Bacteria 5580
49 Ga0105237_10101033 3300009545 Bacteria 2876
50 Ga0105237_10328434 3300009545 Bacteria 1533
51 Ga0105238_10001600 3300009551 Bacteria 22683
52 Ga0105238_10518935 3300009551 Bacteria 1194
53 Ga0105239_10000004 3300010375 Bacteria 532483
54 Ga0105239_10000253 3300010375 Bacteria 79942
55 Ga0105239_10002777 3300010375 Bacteria 21947
56 Ga0105239_10013869 3300010375 Bacteria 8943
57 Ga0105239_10162486 3300010375 Bacteria 2496
58 Ga0157370_10090409 3300013104 Bacteria 2875
59 Ga0157369_10053475 3300013105 Bacteria 4364
60 Ga0157369_10152566 3300013105 Bacteria 2442
61 Ga0157374_10000002 3300013296 Bacteria 1054226
62 Ga0163162_10000064 3300013306 Bacteria 103542
63 Ga0163162_10009432 3300013306 Bacteria 9491
64 Ga0163162_10075209 3300013306 Unclassified 3438
65 Ga0163162_10481343 3300013306 Bacteria 1373
66 Ga0157372_10000547 3300013307 Bacteria 41431
67 Ga0157372_10011861 3300013307 Bacteria 9282
68 Ga0157372_10079685 3300013307 Unclassified 3704
69 Ga0157372_10404542 3300013307 Bacteria 1590
70 Ga0157375_10010908 3300013308 Bacteria 8013
71 Ga0157375_10569160 3300013308 Bacteria 1294
72 Ga0163163_10058475 3300014325 Bacteria 3812
73 Ga0182008_10000370 3300014497 Bacteria 34755
74 Ga0182008_10021591 3300014497 Bacteria 3305
75 Ga0163161_10010122 3300017792 Bacteria 6525
76 Ga0163161_10133181 3300017792 Bacteria 1877
77 Ga0213872_10008091 3300021361 Bacteria 5109
78 Ga0207680_10003514 3300025903 Bacteria 7374
79 Ga0207654_10000426 3300025911 Bacteria 24179
80 Ga0207654_10025075 3300025911 Bacteria 3212
81 Ga0207695_10000023 3300025913 Bacteria 657903
82 Ga0207695_10000031 3300025913 Bacteria 526801
83 Ga0207695_10000585 3300025913 Bacteria 73614
84 Ga0207695_10002088 3300025913 Bacteria 30409
85 Ga0207695_10079045 3300025913 Bacteria 3335
86 Ga0207695_10080466 3300025913 Bacteria 3299
87 Ga0207695_10115164 3300025913 Bacteria 2663
88 Ga0207695_10415454 3300025913 Bacteria 1230
89 Ga0207671_10002020 3300025914 Bacteria 22320
90 Ga0207671_10014783 3300025914 Bacteria 6151
91 Ga0207671_10015521 3300025914 Bacteria 5958
92 Ga0207671_10017716 3300025914 Bacteria 5486
93 Ga0207671_10050159 3300025914 Bacteria 3090
94 Ga0207671_10062790 3300025914 Bacteria 2759
95 Ga0207671_10076519 3300025914 Bacteria 2504
96 Ga0207693_10131352 3300025915 Bacteria 1969
97 Ga0207694_10044746 3300025924 Bacteria 3418
98 Ga0207694_10437363 3300025924 Bacteria 1091
99 Ga0207661_10005406 3300025944 Bacteria 8998
100 Ga0207667_10004863 3300025949 Bacteria 16404
101 Ga0207667_10013851 3300025949 Bacteria 9211
102 Ga0207667_10031835 3300025949 Bacteria 5689
103 Ga0207667_10254637 3300025949 Bacteria 1796
104 Ga0207639_10061080 3300026041 Bacteria 2909
105 Ga0207639_10192626 3300026041 Bacteria 1742
106 Ga0207674_10035126 3300026116 Bacteria 5232
107 Ga0207698_10001066 3300026142 Bacteria 15960
108 Ga0207698_10271308 3300026142 Bacteria 1564
109 Ga0268266_10000078 3300028379 Bacteria 213632
110 Ga0268264_10047912 3300028381 Bacteria 3554
111 Ga0268264_10142334 3300028381 Bacteria 2140
112 Ga0307517_10005695 3300028786 Bacteria 18663
113 Ga0265327_10000191 3300031251 Bacteria 130083
114 Ga0307513_10105190 3300031456 Bacteria 2833
115 Ga0307509_10059180 3300031507 Bacteria 4054
116 Ga0307508_10003815 3300031616 Bacteria 15037
117 Ga0307516_10017943 3300031730 Bacteria 7366
118 Ga0307516_10070766 3300031730 Bacteria 3351
119 Ga0307518_10193012 3300031838 Bacteria 1362
120 Ga0307414_10009073 3300032004 Bacteria 5692
121 Ga0307507_10220250 3300033179 Bacteria 1277
122 Ga0307510_10022726 3300033180 Bacteria 7275
123 Ga0436361_1111083 3300039447 Bacteria 43355
124 Ga0451791_0461526 3300041451 Bacteria 942
125 Ga0466972_0003233 3300044658 Bacteria 8082
126 Ga0466964_0008570 3300044706 Unclassified 3844
127 Ga0466970_0133169 3300044765 Bacteria 1366
128 Ga0466959_0102574 3300045049 Bacteria 2047
129 Ga0451576_0019463 3300045051 Bacteria 7408
130 Ga0495638_0052352 3300046460 Bacteria 2543
131 Ga0495650_0000023 3300046471 Bacteria 527763
132 Ga0495606_0000142 3300046507 Bacteria 123277
133 Ga0495606_0008927 3300046507 Bacteria 8584
134 Ga0495606_0030313 3300046507 Bacteria 3781
135 Ga0495637_0061789 3300046520 Bacteria 1535
136 Ga0495648_0032771 3300046524 Bacteria 3404
137 Ga0495611_0000169 3300046648 Bacteria 47031
138 Ga0495649_0039254 3300046694 Bacteria 2596
139 Ga0495660_0012416 3300046810 Bacteria 4945
140 Ga0495687_031689 3300047443 Bacteria 2422
141 Ga0495686_0000016 3300047472 Bacteria 443701
142 Ga0495686_0040666 3300047472 Bacteria 2964
143 Ga0496123_0043391 3300048926 Bacteria 3090
144 Ga0501034_0007131 3300049571 Bacteria 11923
145 Ga0501034_0112311 3300049571 Bacteria 2715
146 Ga0501034_0194766 3300049571 Bacteria 1987
147 Ga0501223_000637 3300049663 Bacteria 8419
148 Ga0501044_0005624 3300049823 Bacteria 13924
149 Ga0501044_0070201 3300049823 Bacteria 3564
150 Ga0500644_0017279 3300053088 Bacteria 2092
151 Ga0500646_0005095 3300053090 Bacteria 3330
152 Ga0500583_0139766 3300053092 Bacteria 1203
153 Ga0500562_000042 3300053108 Bacteria 67284
154 Ga0500608_014322 3300053122 Bacteria 3538
155 Ga0500588_0000673 3300053146 Bacteria 5720
156 Ga0500622_0006032 3300053156 Bacteria 7121

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005288 Ga0065714_10017395 Ga0065714_100173952 240
2 3300031251 Ga0265327_10000191 Ga0265327_1000019175 245
3 3300041451 Ga0451791_0461526 Ga0451791_0461526_54_827 248
4 iso_pu_bacteria 2738541283 2738754154 254
5 3300003322 rootL2_10190348 rootL2_101903482 255
6 3300003322 rootL2_10257940 rootL2_102579402 255
7 3300031456 Ga0307513_10105190 Ga0307513_101051902 255
8 3300031507 Ga0307509_10059180 Ga0307509_100591806 255
9 3300031616 Ga0307508_10003815 Ga0307508_100038156 255
10 3300031838 Ga0307518_10193012 Ga0307518_101930122 255
11 3300053146 Ga0500588_0000673 Ga0500588_0000673_976_1746 255
12 3300017792 Ga0163161_10133181 Ga0163161_101331813 256
13 3300045051 Ga0451576_0019463 Ga0451576_0019463_3546_4316 256
14 3300003320 rootH2_10207326 rootH2_102073262 257
15 3300003322 rootL2_10025920 rootL2_100259207 257
16 3300003322 rootL2_10208347 rootL2_102083474 257
17 3300003323 rootH1_10134117 rootH1_101341173 257
18 3300005288 Ga0065714_10078912 Ga0065714_100789122 257
19 3300005329 Ga0070683_100023116 Ga0070683_1000231165 257
20 3300005335 Ga0070666_10008860 Ga0070666_100088606 257
21 3300005347 Ga0070668_100266058 Ga0070668_1002660581 257
22 3300005539 Ga0068853_100010430 Ga0068853_1000104303 257
23 3300005539 Ga0068853_100013961 Ga0068853_1000139617 257
24 3300005539 Ga0068853_100055804 Ga0068853_1000558044 257
25 3300005539 Ga0068853_100275369 Ga0068853_1002753693 257
26 3300005548 Ga0070665_100000003 Ga0070665_100000003267 257
27 3300005563 Ga0068855_100001248 Ga0068855_10000124823 257
28 3300005563 Ga0068855_100008829 Ga0068855_1000088295 257
29 3300005563 Ga0068855_100016969 Ga0068855_1000169692 257
30 3300005577 Ga0068857_100023929 Ga0068857_1000239295 257
31 3300005578 Ga0068854_100089397 Ga0068854_1000893972 257
32 3300005578 Ga0068854_100472190 Ga0068854_1004721902 257
33 3300005616 Ga0068852_100051097 Ga0068852_1000510972 257
34 3300005616 Ga0068852_100221676 Ga0068852_1002216762 257
35 3300005840 Ga0068870_10022714 Ga0068870_100227142 257
36 3300005843 Ga0068860_100245577 Ga0068860_1002455772 257
37 3300005983 Ga0081540_1007707 Ga0081540_10077077 257
38 3300006175 Ga0070712_100121016 Ga0070712_1001210161 257
39 3300009093 Ga0105240_10003606 Ga0105240_100036062 257
40 3300009093 Ga0105240_10010115 Ga0105240_100101154 257
41 3300009093 Ga0105240_10015839 Ga0105240_100158392 257
42 3300009093 Ga0105240_10031923 Ga0105240_100319236 257
43 3300009093 Ga0105240_10087974 Ga0105240_100879743 257
44 3300009093 Ga0105240_10228172 Ga0105240_102281722 257
45 3300009093 Ga0105240_10284707 Ga0105240_102847072 257
46 3300009174 Ga0105241_10004518 Ga0105241_100045183 257
47 3300009174 Ga0105241_10084470 Ga0105241_100844704 257
48 3300009545 Ga0105237_10000113 Ga0105237_1000011372 257
49 3300009545 Ga0105237_10013414 Ga0105237_100134142 257
50 3300009545 Ga0105237_10020133 Ga0105237_100201335 257
51 3300009545 Ga0105237_10025144 Ga0105237_100251442 257
52 3300009545 Ga0105237_10029470 Ga0105237_100294706 257
53 3300009545 Ga0105237_10101033 Ga0105237_101010333 257
54 3300009551 Ga0105238_10001600 Ga0105238_100016003 257
55 3300009551 Ga0105238_10518935 Ga0105238_105189352 257
56 3300010375 Ga0105239_10002777 Ga0105239_1000277715 257
57 3300010375 Ga0105239_10013869 Ga0105239_100138697 257
58 3300010375 Ga0105239_10162486 Ga0105239_101624862 257
59 3300013104 Ga0157370_10090409 Ga0157370_100904092 257
60 3300013105 Ga0157369_10053475 Ga0157369_100534755 257
61 3300013105 Ga0157369_10152566 Ga0157369_101525663 257
62 3300013296 Ga0157374_10000002 Ga0157374_10000002111 257
63 3300013306 Ga0163162_10000064 Ga0163162_1000006482 257
64 3300013306 Ga0163162_10009432 Ga0163162_100094324 257
65 3300013306 Ga0163162_10075209 Ga0163162_100752092 257
66 3300013306 Ga0163162_10481343 Ga0163162_104813433 257
67 3300013307 Ga0157372_10000547 Ga0157372_100005473 257
68 3300013307 Ga0157372_10011861 Ga0157372_100118613 257
69 3300013307 Ga0157372_10079685 Ga0157372_100796854 257
70 3300013307 Ga0157372_10404542 Ga0157372_104045422 257
71 3300013308 Ga0157375_10010908 Ga0157375_100109084 257
72 3300013308 Ga0157375_10569160 Ga0157375_105691602 257
73 3300014325 Ga0163163_10058475 Ga0163163_100584752 257
74 3300021361 Ga0213872_10008091 Ga0213872_100080915 257
75 3300025903 Ga0207680_10003514 Ga0207680_100035146 257
76 3300025911 Ga0207654_10000426 Ga0207654_1000042615 257
77 3300025911 Ga0207654_10025075 Ga0207654_100250752 257
78 3300025913 Ga0207695_10000585 Ga0207695_1000058530 257
79 3300025913 Ga0207695_10002088 Ga0207695_100020882 257
80 3300025913 Ga0207695_10080466 Ga0207695_100804663 257
81 3300025913 Ga0207695_10115164 Ga0207695_101151643 257
82 3300025913 Ga0207695_10415454 Ga0207695_104154542 257
83 3300025914 Ga0207671_10002020 Ga0207671_100020205 257
84 3300025914 Ga0207671_10014783 Ga0207671_100147837 257
85 3300025914 Ga0207671_10017716 Ga0207671_100177163 257
86 3300025914 Ga0207671_10062790 Ga0207671_100627902 257
87 3300025914 Ga0207671_10076519 Ga0207671_100765192 257
88 3300025915 Ga0207693_10131352 Ga0207693_101313522 257
89 3300025924 Ga0207694_10044746 Ga0207694_100447463 257
90 3300025924 Ga0207694_10437363 Ga0207694_104373632 257
91 3300025944 Ga0207661_10005406 Ga0207661_100054062 257
92 3300025949 Ga0207667_10004863 Ga0207667_100048632 257
93 3300025949 Ga0207667_10013851 Ga0207667_100138515 257
94 3300025949 Ga0207667_10031835 Ga0207667_100318356 257
95 3300025949 Ga0207667_10254637 Ga0207667_102546372 257
96 3300026041 Ga0207639_10061080 Ga0207639_100610803 257
97 3300026041 Ga0207639_10192626 Ga0207639_101926262 257
98 3300026116 Ga0207674_10035126 Ga0207674_100351265 257
99 3300026142 Ga0207698_10001066 Ga0207698_1000106611 257
100 3300026142 Ga0207698_10271308 Ga0207698_102713082 257
101 3300028379 Ga0268266_10000078 Ga0268266_1000007858 257
102 3300028381 Ga0268264_10142334 Ga0268264_101423342 257
103 3300028786 Ga0307517_10005695 Ga0307517_1000569513 257
104 3300033179 Ga0307507_10220250 Ga0307507_102202502 257
105 3300033180 Ga0307510_10022726 Ga0307510_100227266 257
106 3300039447 Ga0436361_1111083 Ga0436361_1111083_28222_28998 257
107 3300045049 Ga0466959_0102574 Ga0466959_0102574_373_1146 257
108 3300046460 Ga0495638_0052352 Ga0495638_0052352_1546_2319 257
109 3300046471 Ga0495650_0000023 Ga0495650_0000023_193792_194568 257
110 3300046507 Ga0495606_0000142 Ga0495606_0000142_93658_94434 257
111 3300046507 Ga0495606_0008927 Ga0495606_0008927_2203_2979 257
112 3300046507 Ga0495606_0030313 Ga0495606_0030313_1908_2681 257
113 3300046520 Ga0495637_0061789 Ga0495637_0061789_450_1226 257
114 3300046524 Ga0495648_0032771 Ga0495648_0032771_1597_2370 257
115 3300046810 Ga0495660_0012416 Ga0495660_0012416_1161_1937 257
116 3300047443 Ga0495687_031689 Ga0495687_031689_755_1531 257
117 3300047472 Ga0495686_0000016 Ga0495686_0000016_1544_2317 257
118 3300047472 Ga0495686_0040666 Ga0495686_0040666_235_1011 257
119 3300049571 Ga0501034_0007131 Ga0501034_0007131_6720_7502 257
120 3300049571 Ga0501034_0112311 Ga0501034_0112311_1005_1787 257
121 3300049571 Ga0501034_0194766 Ga0501034_0194766_126_908 257
122 3300049823 Ga0501044_0005624 Ga0501044_0005624_9603_10385 257
123 3300049823 Ga0501044_0070201 Ga0501044_0070201_1790_2572 257
124 3300053088 Ga0500644_0017279 Ga0500644_0017279_800_1621 257
125 3300053090 Ga0500646_0005095 Ga0500646_0005095_408_1181 257
126 3300053092 Ga0500583_0139766 Ga0500583_0139766_165_938 257
127 3300053108 Ga0500562_000042 Ga0500562_000042_18263_19084 257
128 3300053122 Ga0500608_014322 Ga0500608_014322_1883_2659 257
129 3300053156 Ga0500622_0006032 Ga0500622_0006032_2502_3275 257
130 3300009093 Ga0105240_10000033 Ga0105240_10000033195 258
131 3300009093 Ga0105240_10000483 Ga0105240_1000048344 258
132 3300009093 Ga0105240_10134023 Ga0105240_101340234 258
133 3300009545 Ga0105237_10009568 Ga0105237_100095686 258
134 3300010375 Ga0105239_10000004 Ga0105239_10000004347 258
135 3300010375 Ga0105239_10000253 Ga0105239_1000025315 258
136 3300014497 Ga0182008_10000370 Ga0182008_1000037024 258
137 3300014497 Ga0182008_10021591 Ga0182008_100215914 258
138 3300017792 Ga0163161_10010122 Ga0163161_100101223 258
139 3300025913 Ga0207695_10000023 Ga0207695_10000023499 258
140 3300025913 Ga0207695_10000031 Ga0207695_1000003143 258
141 3300025914 Ga0207671_10050159 Ga0207671_100501594 258
142 3300031730 Ga0307516_10070766 Ga0307516_100707663 258
143 3300044706 Ga0466964_0008570 Ga0466964_0008570_92_868 258
144 3300044765 Ga0466970_0133169 Ga0466970_0133169_351_1127 258
145 3300046648 Ga0495611_0000169 Ga0495611_0000169_7224_8000 258
146 3300048926 Ga0496123_0043391 Ga0496123_0043391_215_994 258
147 3300049663 Ga0501223_000637 Ga0501223_000637_4265_5065 258
148 3300032004 Ga0307414_10009073 Ga0307414_100090733 261
149 3300005843 Ga0068860_100062202 Ga0068860_1000622022 266
150 3300025913 Ga0207695_10079045 Ga0207695_100790452 266
151 3300025914 Ga0207671_10015521 Ga0207671_100155216 266
152 3300028381 Ga0268264_10047912 Ga0268264_100479122 266
153 3300044658 Ga0466972_0003233 Ga0466972_0003233_7122_7934 269
154 3300046694 Ga0495649_0039254 Ga0495649_0039254_758_1591 277
155 3300009545 Ga0105237_10328434 Ga0105237_103284343 280
156 3300031730 Ga0307516_10017943 Ga0307516_100179436 302
157 3300003320 rootH2_10018002 rootH2_100180022 318

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

63

258

0.98

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

69

291

0.91

PF08659

KR

KR domain

63

242

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
8g93-assembly1.cif.gz_B crystal structures of 17-beta-hydroxysteroid dehydrogenase 13 0.919 63 305
8g9v-assembly4.cif.gz_G crystal structures of 17-beta-hydroxysteroid dehydrogenase 13 0.9179 63 300
4y98-assembly1.cif.gz_A crystal structure of ligd-apo form from sphingobium sp. strain syk-6 0.9157 63 303
8g9v-assembly3.cif.gz_F crystal structures of 17-beta-hydroxysteroid dehydrogenase 13 0.9154 62 298
8g9v-assembly2.cif.gz_C crystal structures of 17-beta-hydroxysteroid dehydrogenase 13 0.9134 62 300
ID Description Score Start End Superfamily
af_Q10782_3_250_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9291 62 307 3.40.50.720
af_Q8SX47_51_284_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9208 64 294 3.40.50.720
af_I6YB11_7_265_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9175 64 300 3.40.50.720
af_Q54CD7_32_271_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9164 61 281 3.40.50.720
af_Q4DKY8_26_208_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.916 62 225 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2V9HL59-F1-model_v4 Oxidoreductase 0.9825 63 216 GO:0016491
GO:0030497
AF-A0A6I1KI08-F1-model_v4 Short-chain dehydrogenase/reductase 0.9736 63 318 GO:0016020
GO:0016491
AF-A0A4Q2UPV8-F1-model_v4 SDR family oxidoreductase 0.9646 63 318 GO:0016020
GO:0016491
AF-A0A2W5XBY4-F1-model_v4 Short-chain dehydrogenase 0.9643 63 317 GO:0016020
GO:0016491
AF-A0A2E9L211-F1-model_v4 Short-chain dehydrogenase 0.9619 62 316 GO:0016020
GO:0016491

Feature Viewer

pLDDT pTM Quality
79.33 0.75 High
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Predicted Structure (AlphaFold2)

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