F225871

General Info

Members Datasets Scaffolds Average Seq Length
156 113 312 157

Family's Representative Sequence

Representative Sequence 3300049590|Ga0501074_0002140|Ga0501074_0002140_4578_5126
Length 182
Sequence MTDTASRNLLSHLAPPEGARQNERRVGRGQGCRKGKICGRGFKGQKARHGGNIEKMHFQGGQTPIQRRLPKRGFRVPFVEQVVAINVGSLERFPAGSKVDSTALTKVRLLQVKGATIKVLGDGNLSKKLEVSAHVFSKSALEKIEKAGGKAIVIASAAAPAAKADGAKTTKSAKGSTAKAGA

Samples

Sample ID Description Type Environment
1 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
2 3300003163 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
3 3300003300 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_1 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
10 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
11 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
12 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
13 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
14 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
15 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
25 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
27 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
28 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
29 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
34 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
35 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
36 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
47 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
48 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
49 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
50 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
51 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
52 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
53 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
54 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
55 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
56 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
57 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
58 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
59 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
60 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
61 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
62 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
63 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
64 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
65 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
66 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
67 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
68 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
69 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
70 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
71 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
72 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
73 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
74 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
75 3300049129 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
76 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
77 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
78 3300049162 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
79 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
80 3300049529 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
81 3300049531 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
82 3300049533 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
83 3300049536 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_A_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
84 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
87 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
88 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
89 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
90 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
91 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
92 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
93 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
94 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
95 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
96 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
97 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
98 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
99 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
100 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
101 3300059477 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 50R_CW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
102 3300059478 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 58R_AW_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
103 3300059493 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 19R_SW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
104 3300059506 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 52R_CW_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
105 3300059512 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 57R_AW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
106 3300059624 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 146R_CW_T3_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
107 3300059639 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 3R_CW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
108 3300059641 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 9R_AW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
109 3300059643 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 13R_AD_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
110 3300060344 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 36R_AW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
111 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
112 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
113 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.92
Metatranscriptomes 23.08
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.85
Nodule 0
Rhizoplane 3.21
Rhizosphere 84.62
Stem 0
Stem Tuber 0
Unclassified 3.85

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501074_0002140 3300049590 Bacteria 13659
2 Ga0006759J45824_1029961 3300003163 Bacteria 6330
3 Ga0006759J45824_1054749 3300003163 Bacteria 1371
4 Ga0006759J45824_1095045 3300003163 Bacteria 1001
5 Ga0006759J45824_1095067 3300003163 Bacteria 667
6 Ga0006758J48902_1018449 3300003300 Bacteria 896
7 Ga0006758J48902_1029522 3300003300 Bacteria 969
8 rootH2_10088904 3300003320 Bacteria 3107
9 rootH2_10101279 3300003320 Bacteria 1784
10 rootH2_10129221 3300003320 Bacteria 1394
11 rootL2_10057810 3300003322 Bacteria 1252
12 rootH1_10060734 3300003323 Bacteria 1477
13 rootH1_10066487 3300003323 Bacteria 3032
14 rootH1_10092352 3300003323 Bacteria 1391
15 Ga0070658_10586302 3300005327 Bacteria 966
16 Ga0070670_100384324 3300005331 Bacteria 1237
17 Ga0070677_10005384 3300005333 Bacteria 4215
18 Ga0070682_100014403 3300005337 Bacteria 4569
19 Ga0070682_100036787 3300005337 Bacteria 2993
20 Ga0070701_10524006 3300005438 Bacteria 773
21 Ga0070700_101218092 3300005441 Bacteria 629
22 Ga0070685_10239608 3300005466 Bacteria 1197
23 Ga0070672_100252492 3300005543 Bacteria 1485
24 Ga0070693_100405962 3300005547 Unclassified 946
25 Ga0070693_100417058 3300005547 Bacteria 935
26 Ga0070665_101258799 3300005548 Bacteria 750
27 Ga0068855_100000266 3300005563 Bacteria 65127
28 Ga0068854_100992128 3300005578 Bacteria 743
29 Ga0068856_100040989 3300005614 Bacteria 4549
30 Ga0070702_100600382 3300005615 Bacteria 825
31 Ga0070702_101220071 3300005615 Bacteria 607
32 Ga0068859_101294717 3300005617 Bacteria 803
33 Ga0068864_100327549 3300005618 Bacteria 1440
34 Ga0068863_100147121 3300005841 Bacteria 2254
35 Ga0075366_10068424 3300006195 Bacteria 2113
36 Ga0097621_100091599 3300006237 Bacteria 2545
37 Ga0097621_100608949 3300006237 Unclassified 999
38 Ga0075433_11321516 3300006852 Bacteria 624
39 Ga0075429_100485936 3300006880 Bacteria 1082
40 Ga0068865_100190081 3300006881 Bacteria 1587
41 Ga0097620_101294321 3300006931 Bacteria 803
42 Ga0111539_11720596 3300009094 Bacteria 727
43 Ga0105237_10603017 3300009545 Bacteria 1105
44 Ga0105249_11184264 3300009553 Bacteria 835
45 Ga0163163_10368659 3300014325 Bacteria 1493
46 Ga0163163_10625113 3300014325 Bacteria 1140
47 Ga0157380_10278057 3300014326 Bacteria 1530
48 Ga0157380_10514185 3300014326 Bacteria 1166
49 Ga0157376_10144511 3300014969 Bacteria 2138
50 Ga0157376_10272186 3300014969 Bacteria 1591
51 Ga0157376_11440228 3300014969 Bacteria 721
52 Ga0207682_10011884 3300025893 Bacteria 3400
53 Ga0207650_10489980 3300025925 Bacteria 1026
54 Ga0207686_10730767 3300025934 Bacteria 789
55 Ga0207704_10076308 3300025938 Bacteria 2147
56 Ga0207691_10059118 3300025940 Bacteria 3486
57 Ga0207667_10000612 3300025949 Bacteria 46149
58 Ga0207667_10003431 3300025949 Bacteria 19566
59 Ga0207702_10053173 3300026078 Bacteria 3428
60 Ga0207641_10110487 3300026088 Bacteria 2436
61 Ga0207674_10086239 3300026116 Bacteria 3134
62 Ga0207675_100181504 3300026118 Bacteria 2015
63 Ga0307515_10341306 3300028794 Bacteria 1150
64 Ga0307515_10386143 3300028794 Bacteria 1031
65 Ga0265328_10146908 3300031239 Bacteria 886
66 Ga0265339_10005033 3300031249 Bacteria 8891
67 Ga0265316_10008237 3300031344 Bacteria 9701
68 Ga0307513_10467709 3300031456 Bacteria 983
69 Ga0307508_10256291 3300031616 Bacteria 1345
70 Ga0265314_10000003 3300031711 Bacteria 1653386
71 Ga0316576_10037071 3300031727 Bacteria 3488
72 Ga0307407_10007732 3300031903 Bacteria 4887
73 Ga0307407_10554010 3300031903 Bacteria 850
74 Ga0307412_10007950 3300031911 Bacteria 6045
75 Ga0307409_100151662 3300031995 Bacteria 2013
76 Ga0307416_100586554 3300032002 Bacteria 1193
77 Ga0307416_100930677 3300032002 Bacteria 970
78 Ga0316583_10204217 3300032133 Unclassified 686
79 Ga0316593_10112986 3300032168 Bacteria 971
80 Ga0316588_1010951 3300033528 Bacteria 1924
81 Ga0316588_1081671 3300033528 Unclassified 801
82 Ga0373944_0326341 3300035089 Bacteria 580
83 Ga0373943_0533129 3300035170 Bacteria 688
84 Ga0373935_0613618 3300035692 Bacteria 796
85 Ga0373933_0116829 3300035724 Bacteria 1668
86 Ga0436360_0142140 3300039438 Bacteria 951
87 Ga0451791_0046900 3300041451 Bacteria 1233
88 Ga0451793_1434236 3300041452 Bacteria 901
89 Ga0451797_0253878 3300041453 Bacteria 654
90 Ga0451797_1267381 3300041453 Bacteria 1515
91 Ga0451807_1524864 3300041486 Bacteria 1080
92 Ga0451837_0463397 3300041494 Bacteria 1530
93 Ga0451853_3105211 3300041512 Bacteria 979
94 Ga0466965_0088559 3300044683 Bacteria 1572
95 Ga0466960_0279929 3300044901 Bacteria 934
96 Ga0451576_0424853 3300045051 Bacteria 1394
97 Ga0501309_009329 3300049129 Bacteria 1250
98 Ga0501309_029767 3300049129 Bacteria 801
99 Ga0501309_039041 3300049129 Bacteria 721
100 Ga0501310_035491 3300049130 Bacteria 677
101 Ga0501310_042701 3300049130 Bacteria 636
102 Ga0501305_020519 3300049161 Bacteria 972
103 Ga0501307_009166 3300049162 Bacteria 1127
104 Ga0501312_061776 3300049528 Bacteria 650
105 Ga0501313_007478 3300049529 Bacteria 1204
106 Ga0501315_012749 3300049531 Bacteria 1044
107 Ga0501317_009988 3300049533 Bacteria 1126
108 Ga0501320_016134 3300049536 Bacteria 823
109 Ga0501320_020823 3300049536 Bacteria 758
110 Ga0501036_0272879 3300049572 Bacteria 1416
111 Ga0501047_0043293 3300049581 Bacteria 4349
112 Ga0501067_0860825 3300049583 Unclassified 511
113 Ga0501068_0155758 3300049584 Bacteria 1438
114 Ga0501068_0200934 3300049584 Bacteria 1264
115 Ga0501072_0330068 3300049588 Bacteria 1212
116 Ga0501073_0007779 3300049589 Bacteria 7959
117 Ga0501073_0014090 3300049589 Bacteria 5809
118 Ga0501073_0330092 3300049589 Bacteria 1053
119 Ga0501076_0671436 3300049592 Bacteria 855
120 Ga0501077_0079462 3300049593 Bacteria 2078
121 Ga0501077_0343384 3300049593 Bacteria 952
122 Ga0501235_005994 3300049669 Bacteria 2645
123 Ga0501080_0001538 3300049742 Bacteria 19472
124 Ga0501080_0028728 3300049742 Bacteria 5177
125 Ga0501080_0458358 3300049742 Bacteria 1142
126 Ga0501083_0010185 3300049744 Bacteria 6625
127 Ga0501083_0053042 3300049744 Bacteria 2723
128 Ga0501083_0302015 3300049744 Bacteria 1041
129 Ga0501083_0511849 3300049744 Bacteria 781
130 Ga0501035_0322820 3300049822 Bacteria 1297
131 nmdc:mga0k408_154788_c1 3300050493 Bacteria 1365
132 nmdc:mga0k408_3991_c1 3300050493 Bacteria 7823
133 nmdc:mga0k408_566772_c1 3300050493 Bacteria 671
134 Ga0500647_0142022 3300053091 Bacteria 1126
135 Ga0500555_075993 3300053103 Bacteria 880
136 Ga0501084_0000461 3300054114 Bacteria 31395
137 Ga0501084_0021102 3300054114 Bacteria 5432
138 Ga0501084_0474760 3300054114 Bacteria 1057
139 Ga0590075_012298 3300059424 Bacteria 2077
140 Ga0587084_030075 3300059477 Bacteria 869
141 Ga0587093_007930 3300059478 Bacteria 1196
142 Ga0587077_057553 3300059493 Bacteria 833
143 Ga0587085_011224 3300059506 Bacteria 1205
144 Ga0587085_013599 3300059506 Bacteria 1135
145 Ga0587085_037654 3300059506 Bacteria 827
146 Ga0587092_032031 3300059512 Bacteria 875
147 Ga0587109_055729 3300059624 Unclassified 821
148 Ga0587062_010606 3300059639 Bacteria 1147
149 Ga0587068_017689 3300059641 Bacteria 1141
150 Ga0587068_020060 3300059641 Bacteria 1089
151 Ga0587072_023389 3300059643 Bacteria 1110
152 Ga0587071_068484 3300060344 Bacteria 768
153 Ga0587111_0007865 3300060346 Bacteria 1748
154 Ga0501082_0010286 3300060353 Bacteria 8053
155 Ga0501082_0299657 3300060353 Bacteria 1400
156 Ga0466962_0072628 3300061719 Bacteria 1644
157 Ga0501074_0002140
158 Ga0006759J45824_1029961
159 Ga0006759J45824_1054749
160 Ga0006759J45824_1095045
161 Ga0006759J45824_1095067
162 Ga0006758J48902_1018449
163 Ga0006758J48902_1029522
164 rootH2_10088904
165 rootH2_10101279
166 rootH2_10129221
167 rootL2_10057810
168 rootH1_10060734
169 rootH1_10066487
170 rootH1_10092352
171 Ga0070658_10586302
172 Ga0070670_100384324
173 Ga0070677_10005384
174 Ga0070682_100014403
175 Ga0070682_100036787
176 Ga0070701_10524006
177 Ga0070700_101218092
178 Ga0070685_10239608
179 Ga0070672_100252492
180 Ga0070693_100405962
181 Ga0070693_100417058
182 Ga0070665_101258799
183 Ga0068855_100000266
184 Ga0068854_100992128
185 Ga0068856_100040989
186 Ga0070702_100600382
187 Ga0070702_101220071
188 Ga0068859_101294717
189 Ga0068864_100327549
190 Ga0068863_100147121
191 Ga0075366_10068424
192 Ga0097621_100091599
193 Ga0097621_100608949
194 Ga0075433_11321516
195 Ga0075429_100485936
196 Ga0068865_100190081
197 Ga0097620_101294321
198 Ga0111539_11720596
199 Ga0105237_10603017
200 Ga0105249_11184264
201 Ga0163163_10368659
202 Ga0163163_10625113
203 Ga0157380_10278057
204 Ga0157380_10514185
205 Ga0157376_10144511
206 Ga0157376_10272186
207 Ga0157376_11440228
208 Ga0207682_10011884
209 Ga0207650_10489980
210 Ga0207686_10730767
211 Ga0207704_10076308
212 Ga0207691_10059118
213 Ga0207667_10000612
214 Ga0207667_10003431
215 Ga0207702_10053173
216 Ga0207641_10110487
217 Ga0207674_10086239
218 Ga0207675_100181504
219 Ga0307515_10341306
220 Ga0307515_10386143
221 Ga0265328_10146908
222 Ga0265339_10005033
223 Ga0265316_10008237
224 Ga0307513_10467709
225 Ga0307508_10256291
226 Ga0265314_10000003
227 Ga0316576_10037071
228 Ga0307407_10007732
229 Ga0307407_10554010
230 Ga0307412_10007950
231 Ga0307409_100151662
232 Ga0307416_100586554
233 Ga0307416_100930677
234 Ga0316583_10204217
235 Ga0316593_10112986
236 Ga0316588_1010951
237 Ga0316588_1081671
238 Ga0373944_0326341
239 Ga0373943_0533129
240 Ga0373935_0613618
241 Ga0373933_0116829
242 Ga0436360_0142140
243 Ga0451791_0046900
244 Ga0451793_1434236
245 Ga0451797_0253878
246 Ga0451797_1267381
247 Ga0451807_1524864
248 Ga0451837_0463397
249 Ga0451853_3105211
250 Ga0466965_0088559
251 Ga0466960_0279929
252 Ga0451576_0424853
253 Ga0501309_009329
254 Ga0501309_029767
255 Ga0501309_039041
256 Ga0501310_035491
257 Ga0501310_042701
258 Ga0501305_020519
259 Ga0501307_009166
260 Ga0501312_061776
261 Ga0501313_007478
262 Ga0501315_012749
263 Ga0501317_009988
264 Ga0501320_016134
265 Ga0501320_020823
266 Ga0501036_0272879
267 Ga0501047_0043293
268 Ga0501067_0860825
269 Ga0501068_0155758
270 Ga0501068_0200934
271 Ga0501072_0330068
272 Ga0501073_0007779
273 Ga0501073_0014090
274 Ga0501073_0330092
275 Ga0501076_0671436
276 Ga0501077_0079462
277 Ga0501077_0343384
278 Ga0501235_005994
279 Ga0501080_0001538
280 Ga0501080_0028728
281 Ga0501080_0458358
282 Ga0501083_0010185
283 Ga0501083_0053042
284 Ga0501083_0302015
285 Ga0501083_0511849
286 Ga0501035_0322820
287 nmdc:mga0k408_154788_c1
288 nmdc:mga0k408_3991_c1
289 nmdc:mga0k408_566772_c1
290 Ga0500647_0142022
291 Ga0500555_075993
292 Ga0501084_0000461
293 Ga0501084_0021102
294 Ga0501084_0474760
295 Ga0590075_012298
296 Ga0587084_030075
297 Ga0587093_007930
298 Ga0587077_057553
299 Ga0587085_011224
300 Ga0587085_013599
301 Ga0587085_037654
302 Ga0587092_032031
303 Ga0587109_055729
304 Ga0587062_010606
305 Ga0587068_017689
306 Ga0587068_020060
307 Ga0587072_023389
308 Ga0587071_068484
309 Ga0587111_0007865
310 Ga0501082_0010286
311 Ga0501082_0299657
312 Ga0466962_0072628

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00828

Ribosomal_L27A

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

34

152

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
2yx6-assembly3.cif.gz_D-3 crystal structure of ph0822 0.9411 112 135
1p90-assembly1.cif.gz_A the three-dimensional structure of the core domain of nafy from azotobacter vinelandii determined at 1.8 resolution 0.8919 112 135
1w2b-assembly1.cif.gz_N trigger factor ribosome binding domain in complex with 50s 0.8356 65 134
6th6-assembly1.cif.gz_BR cryo-em structure of t. kodakarensis 70s ribosome 0.8285 65 136
4v6u-assembly1.cif.gz_BP promiscuous behavior of proteins in archaeal ribosomes revealed by cryo-em: implications for evolution of eukaryotic ribosomes 0.8027 67 136
ID Description Score Start End Superfamily
af_P0A0F8_66_146_3.100.10.10 Alpha Beta;Ribosomal Protein L15; Chain: K; domain 2;Ribosomal Protein L15; Chain: K; domain 2; 0.9608 65 136 3.100.10.10
5v7qL01 Alpha Beta;Ribosomal Protein L15; Chain: K; domain 2;Ribosomal Protein L15; Chain: K; domain 2; 0.9095 66 134 3.100.10.10
af_Q10PV6_148_224_3.100.10.10 Alpha Beta;Ribosomal Protein L15; Chain: K; domain 2;Ribosomal Protein L15; Chain: K; domain 2; 0.8952 65 133 3.100.10.10
4qjsP01 Alpha Beta;Ribosomal Protein L15; Chain: K; domain 2;Ribosomal Protein L15; Chain: K; domain 2; 0.8939 66 137 3.100.10.10
af_A0A0R0I064_101_171_3.100.10.10 Alpha Beta;Ribosomal Protein L15; Chain: K; domain 2;Ribosomal Protein L15; Chain: K; domain 2; 0.8929 75 135 3.100.10.10
ID Description Score Start End GO Terms
AF-A0A0S2I9B7-F1-model_v4 50S ribosomal protein L15 0.9829 66 137 GO:0005840
GO:1990904
AF-A0A2N2MPQ1-F1-model_v4 50S ribosomal protein L15 0.9699 66 137 GO:0003735
GO:0006412
GO:0022625
AF-A0A7X6YYS4-F1-model_v4 50S ribosomal protein L15 0.9667 64 137 GO:0003735
GO:0005840
GO:0006412
GO:1990904
AF-A0A7C1DR23-F1-model_v4 50S ribosomal protein L15 0.9661 68 137 GO:0003735
GO:0006412
GO:0015934
AF-A0A432EFN8-F1-model_v4 50S ribosomal protein L15 0.9648 66 137 GO:0003735
GO:0006412
GO:0022625

Map