F225856

General Info

Members Datasets Scaffolds Average Seq Length
156 129 312 404

Family's Representative Sequence

Representative Sequence 3300049586|Ga0501070_0005430|Ga0501070_0005430_9263_10549
Length 428
Sequence MNATRRNDASMTIDLLADPGARPPGTPWKDPASYWGAMSRALGDVSGPVAAINADALRYNALDLVVRAGGVPIRVASKSVRVREVIDAVLALPGYQGILAFTLPEALWLAQDRDGAPGHDDIVLGYPTVDRAAIAALAGDEVAASRITLMVDDLAQLDLVDAIAAPGTRPEIRVAIDADASWRAPGLGHIGVFRSPVHDAPEVAALARSIAARDGFRLVGLMMYEAQIAGQGDATGSGDAVVRWMQRRSGAELLERRAAIVAALRDIAPLEFVNGGGTGSLEVTASDQAVTELTAGSGLLAGHLFDGYRAFDPAPAAAFALEVVRKPAPDIATVLGGGWIASGPALESRQPRAVWPAGLRTAPREGAGEVQTPLRGDAARGLRVGDRVWFRHSKSGELAERVDRYHVVDGSGLVGTIATYRGEGKAFL

Samples

Sample ID Description Type Environment
1 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
7 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
8 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
9 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
10 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
11 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
12 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
13 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
14 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
15 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
16 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
17 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
18 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
19 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
24 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
25 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
26 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
27 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
28 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
29 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
30 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
31 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
32 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
33 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
34 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
35 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
36 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
37 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
38 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
39 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
40 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
41 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
42 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
43 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
44 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
45 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
46 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
47 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
48 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
49 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
50 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
51 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
52 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
53 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
54 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
55 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
56 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
57 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
58 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
59 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
60 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
61 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
62 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
63 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
64 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
65 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
66 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
67 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
68 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
69 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
70 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
71 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
72 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
73 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
74 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
75 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
76 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
77 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
78 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
79 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
80 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
81 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
82 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
83 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
84 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
85 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
86 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
87 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
88 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
89 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
90 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
91 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
92 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
93 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
94 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
95 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
96 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
97 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
98 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
99 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
100 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
101 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
102 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
103 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
104 2643221566 Microbacterium sp. Root166 Isolate Unclassified
105 2643221575 Microbacterium sp. Root61 Isolate Unclassified
106 2643221597 Microbacterium sp. Root180 Isolate Unclassified
107 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
108 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
109 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
110 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
111 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
112 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
113 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
114 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
115 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
116 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
117 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
118 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
119 2867428634 Streptomyces sp. RP5T Isolate Unclassified
120 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
121 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
122 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
123 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
124 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
125 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
126 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
127 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
128 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
129 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 79.49
Metatranscriptomes 1.92
Isolates 18.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.85
Nodule 0
Rhizoplane 8.33
Rhizosphere 60.26
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501070_0005430 3300049586 Bacteria 10883
2 rootL2_10064126 3300003322 Bacteria 22731
3 rootH1_10019122 3300003323 Bacteria 7983
4 Ga0006562J51391_1029663 3300003578 Bacteria 18830
5 Ga0006562J51391_1029667 3300003578 Bacteria 14190
6 Ga0070714_100007912 3300005435 Bacteria 8279
7 Ga0070714_100010419 3300005435 Bacteria 7347
8 Ga0070698_100042614 3300005471 Bacteria 4656
9 Ga0070684_100097108 3300005535 Bacteria 2627
10 Ga0068853_100271540 3300005539 Bacteria 1562
11 Ga0075365_10024349 3300006038 Bacteria 3817
12 Ga0075367_10007183 3300006178 Bacteria 5686
13 Ga0075369_10008435 3300006186 Bacteria 3964
14 Ga0171462_1004 3300013250 Bacteria 678877
15 Ga0157372_10389414 3300013307 Bacteria 1624
16 Ga0157380_10304944 3300014326 Bacteria 1469
17 Ga0182008_10002088 3300014497 Bacteria 12758
18 Ga0182007_10001715 3300015262 Bacteria 11563
19 Ga0206353_11782370 3300020082 Bacteria 11269
20 Ga0213875_10000555 3300021388 Bacteria 30558
21 Ga0207664_10016178 3300025929 Bacteria 5435
22 Ga0207690_10200378 3300025932 Bacteria 1516
23 Ga0207709_10072532 3300025935 Bacteria 2190
24 Ga0207639_10234986 3300026041 Bacteria 1591
25 Ga0209371_1006733 3300027312 Bacteria 4182
26 Ga0268256_1009335 3300030500 Bacteria 3271
27 Ga0307511_10000149 3300030521 Bacteria 66563
28 Ga0307511_10003360 3300030521 Bacteria 16473
29 Ga0307511_10035353 3300030521 Bacteria 4364
30 Ga0307512_10013986 3300030522 Bacteria 7491
31 Ga0307513_10003045 3300031456 Bacteria 22862
32 Ga0307513_10010116 3300031456 Bacteria 11879
33 Ga0307509_10014228 3300031507 Bacteria 9370
34 Ga0307509_10096912 3300031507 Bacteria 2999
35 Ga0307514_10001362 3300031649 Bacteria 30939
36 Ga0307516_10046093 3300031730 Bacteria 4304
37 Ga0307406_10000065 3300031901 Bacteria 58903
38 Ga0307406_10054809 3300031901 Bacteria 2546
39 Ga0307409_100128709 3300031995 Bacteria 2159
40 Ga0307510_10060035 3300033180 Bacteria 3918
41 Ga0373956_0000854 3300035119 Bacteria 12669
42 Ga0373925_0019698 3300037068 Bacteria 4910
43 Ga0395898_0059399 3300037466 Bacteria 3720
44 Ga0436364_0667270 3300037853 Bacteria 158868
45 Ga0395901_0068035 3300038443 Bacteria 3710
46 Ga0395901_0102974 3300038443 Bacteria 2995
47 Ga0451793_1559668 3300041452 Bacteria 1060
48 Ga0451843_0527821 3300041509 Bacteria 2170
49 Ga0451853_0810216 3300041512 Bacteria 1995
50 Ga0451853_2560074 3300041512 Bacteria 3568
51 Ga0439449_0029251 3300042007 Bacteria 2053
52 Ga0466969_0006862 3300044656 Bacteria 6059
53 Ga0466969_0060498 3300044656 Bacteria 1841
54 Ga0466965_0026775 3300044683 Bacteria 2796
55 Ga0466966_0014201 3300044684 Bacteria 5272
56 Ga0466961_0048790 3300044693 Bacteria 2707
57 Ga0466961_0106550 3300044693 Bacteria 1764
58 Ga0466957_0056635 3300044842 Bacteria 2398
59 Ga0466959_0077826 3300045049 Bacteria 2392
60 Ga0466958_0071297 3300045836 Bacteria 2127
61 Ga0466967_0002695 3300045976 Bacteria 11215
62 Ga0466967_0006279 3300045976 Bacteria 8383
63 Ga0466967_0197849 3300045976 Bacteria 1902
64 Ga0495617_008115 3300046452 Bacteria 3628
65 Ga0495629_0006174 3300046459 Bacteria 8899
66 Ga0495594_0094049 3300046499 Bacteria 1681
67 Ga0495607_0024945 3300046501 Bacteria 3723
68 Ga0495583_0018964 3300046506 Bacteria 3604
69 Ga0495583_0057653 3300046506 Bacteria 1745
70 Ga0495616_0022226 3300046513 Bacteria 3426
71 Ga0495620_0003938 3300046515 Bacteria 8442
72 Ga0495620_0032264 3300046515 Bacteria 2388
73 Ga0495631_0006207 3300046518 Bacteria 6188
74 Ga0495643_0107897 3300046522 Bacteria 1418
75 Ga0495648_0078879 3300046524 Bacteria 1881
76 Ga0495666_0010478 3300046526 Bacteria 4622
77 Ga0495666_0094987 3300046526 Bacteria 1406
78 Ga0495640_0007462 3300046533 Bacteria 8590
79 Ga0495609_0056239 3300046538 Bacteria 1743
80 Ga0495633_0016876 3300046558 Bacteria 3748
81 Ga0495668_0015453 3300046616 Bacteria 4456
82 Ga0495625_0033932 3300046660 Bacteria 3768
83 Ga0495657_0000911 3300046675 Bacteria 26065
84 Ga0495613_0005218 3300046689 Bacteria 9758
85 Ga0495613_0016201 3300046689 Bacteria 5552
86 Ga0495613_0033353 3300046689 Bacteria 3826
87 Ga0495624_0130117 3300046690 Bacteria 1543
88 Ga0495649_0070597 3300046694 Bacteria 1872
89 Ga0495589_0078167 3300046794 Bacteria 1611
90 Ga0495660_0051036 3300046810 Bacteria 2251
91 Ga0495604_0074739 3300047317 Bacteria 2553
92 Ga0495672_0073290 3300047320 Bacteria 1932
93 Ga0495676_0030807 3300047321 Bacteria 4545
94 Ga0495680_0041709 3300047322 Bacteria 3647
95 Ga0495683_0011943 3300047323 Bacteria 4565
96 Ga0495687_000984 3300047443 Bacteria 28680
97 Ga0495687_045901 3300047443 Bacteria 1889
98 Ga0495677_0028689 3300047445 Bacteria 2022
99 Ga0495685_008289 3300047447 Bacteria 3446
100 Ga0495593_0020372 3300047673 Bacteria 3714
101 Ga0495614_0063107 3300048089 Bacteria 1592
102 Ga0496104_0405179 3300048907 Bacteria 1276
103 Ga0496108_0031779 3300048911 Bacteria 4382
104 Ga0496109_0008279 3300048912 Bacteria 8830
105 Ga0496109_0042904 3300048912 Bacteria 4100
106 Ga0496109_0044272 3300048912 Bacteria 4038
107 Ga0496109_0175038 3300048912 Bacteria 2014
108 Ga0496110_0030117 3300048913 Bacteria 4676
109 Ga0496111_0288362 3300048914 Bacteria 1217
110 Ga0496114_0040912 3300048917 Bacteria 3840
111 Ga0496114_0066416 3300048917 Bacteria 3024
112 Ga0496114_0109069 3300048917 Bacteria 2370
113 Ga0496115_0091284 3300048918 Bacteria 2489
114 Ga0496117_0014458 3300048920 Bacteria 6798
115 Ga0496117_0049763 3300048920 Bacteria 2977
116 Ga0496118_0029978 3300048921 Bacteria 4553
117 Ga0496118_0034660 3300048921 Bacteria 4113
118 Ga0496119_0002548 3300048922 Bacteria 19838
119 Ga0496122_0006980 3300048925 Bacteria 12712
120 Ga0496125_0000167 3300048928 Bacteria 147134
121 Ga0495678_017644 3300049459 Bacteria 3227
122 nmdc:mga0yw44_19838_c2 3300050492 Bacteria 2907
123 nmdc:mga06z11_5622_c1 3300050494 Bacteria 5045
124 Ga0495619_0167951 3300053085 Bacteria 1517
125 Ga0500559_0003565 3300053136 Bacteria 7615
126 Ga0466962_0023741 3300061719 Bacteria 2947
127 Ga0466962_0032534 3300061719 Bacteria 2497
128 2585311976 2582581314 Bacteria 11452267
129 2616693204 2616644814 Bacteria 11555299
130 2623499542 2622736605 Bacteria 4992138
131 2643849213 2643221566 Bacteria 3460379
132 2643886026 2643221575 Bacteria 4022601
133 2643995429 2643221597 Bacteria 3347721
134 2774395013 2773857762 Bacteria 5971770
135 2774398958 2773857763 Bacteria 4180068
136 2785339356 2784746763 Bacteria 9783172
137 2808630738 2808606306 Bacteria 3608896
138 2808886039 2808606368 Bacteria 3174172
139 2809194379 2808606439 Bacteria 5952208
140 2812323775 2811994872 Bacteria 4121241
141 2812348887 2811994878 Bacteria 5992952
142 2821270475 2821268502 Bacteria 3750023
143 2833711454 2833709550 Bacteria 4008291
144 2862291345 2862290372 Bacteria 7471434
145 2863407505 2863404153 Bacteria 9672205
146 2867437598 2867428634 Bacteria 9590268
147 2870630810 2870628048 Bacteria 3696012
148 2870790220 2870782633 Bacteria 9624083
149 2875392421 2875391855 Bacteria 7600475
150 2946024653 2946024296 Bacteria 3508095
151 2954009359 2954002825 Bacteria 9173742
152 2954701376 2954691527 Bacteria 10720516
153 2954732060 2954731030 Bacteria 10243860
154 2995727431 2995726249 Bacteria 3470435
155 8004213674 8004212874 Bacteria 2861420
156 8045830750 8045830549 Bacteria 4444727
157 Ga0501070_0005430
158 rootL2_10064126
159 rootH1_10019122
160 Ga0006562J51391_1029663
161 Ga0006562J51391_1029667
162 Ga0070714_100007912
163 Ga0070714_100010419
164 Ga0070698_100042614
165 Ga0070684_100097108
166 Ga0068853_100271540
167 Ga0075365_10024349
168 Ga0075367_10007183
169 Ga0075369_10008435
170 Ga0171462_1004
171 Ga0157372_10389414
172 Ga0157380_10304944
173 Ga0182008_10002088
174 Ga0182007_10001715
175 Ga0206353_11782370
176 Ga0213875_10000555
177 Ga0207664_10016178
178 Ga0207690_10200378
179 Ga0207709_10072532
180 Ga0207639_10234986
181 Ga0209371_1006733
182 Ga0268256_1009335
183 Ga0307511_10000149
184 Ga0307511_10003360
185 Ga0307511_10035353
186 Ga0307512_10013986
187 Ga0307513_10003045
188 Ga0307513_10010116
189 Ga0307509_10014228
190 Ga0307509_10096912
191 Ga0307514_10001362
192 Ga0307516_10046093
193 Ga0307406_10000065
194 Ga0307406_10054809
195 Ga0307409_100128709
196 Ga0307510_10060035
197 Ga0373956_0000854
198 Ga0373925_0019698
199 Ga0395898_0059399
200 Ga0436364_0667270
201 Ga0395901_0068035
202 Ga0395901_0102974
203 Ga0451793_1559668
204 Ga0451843_0527821
205 Ga0451853_0810216
206 Ga0451853_2560074
207 Ga0439449_0029251
208 Ga0466969_0006862
209 Ga0466969_0060498
210 Ga0466965_0026775
211 Ga0466966_0014201
212 Ga0466961_0048790
213 Ga0466961_0106550
214 Ga0466957_0056635
215 Ga0466959_0077826
216 Ga0466958_0071297
217 Ga0466967_0002695
218 Ga0466967_0006279
219 Ga0466967_0197849
220 Ga0495617_008115
221 Ga0495629_0006174
222 Ga0495594_0094049
223 Ga0495607_0024945
224 Ga0495583_0018964
225 Ga0495583_0057653
226 Ga0495616_0022226
227 Ga0495620_0003938
228 Ga0495620_0032264
229 Ga0495631_0006207
230 Ga0495643_0107897
231 Ga0495648_0078879
232 Ga0495666_0010478
233 Ga0495666_0094987
234 Ga0495640_0007462
235 Ga0495609_0056239
236 Ga0495633_0016876
237 Ga0495668_0015453
238 Ga0495625_0033932
239 Ga0495657_0000911
240 Ga0495613_0005218
241 Ga0495613_0016201
242 Ga0495613_0033353
243 Ga0495624_0130117
244 Ga0495649_0070597
245 Ga0495589_0078167
246 Ga0495660_0051036
247 Ga0495604_0074739
248 Ga0495672_0073290
249 Ga0495676_0030807
250 Ga0495680_0041709
251 Ga0495683_0011943
252 Ga0495687_000984
253 Ga0495687_045901
254 Ga0495677_0028689
255 Ga0495685_008289
256 Ga0495593_0020372
257 Ga0495614_0063107
258 Ga0496104_0405179
259 Ga0496108_0031779
260 Ga0496109_0008279
261 Ga0496109_0042904
262 Ga0496109_0044272
263 Ga0496109_0175038
264 Ga0496110_0030117
265 Ga0496111_0288362
266 Ga0496114_0040912
267 Ga0496114_0066416
268 Ga0496114_0109069
269 Ga0496115_0091284
270 Ga0496117_0014458
271 Ga0496117_0049763
272 Ga0496118_0029978
273 Ga0496118_0034660
274 Ga0496119_0002548
275 Ga0496122_0006980
276 Ga0496125_0000167
277 Ga0495678_017644
278 nmdc:mga0yw44_19838_c2
279 nmdc:mga06z11_5622_c1
280 Ga0495619_0167951
281 Ga0500559_0003565
282 Ga0466962_0023741
283 Ga0466962_0032534
284 2585311976
285 2616693204
286 2623499542
287 2643849213
288 2643886026
289 2643995429
290 2774395013
291 2774398958
292 2785339356
293 2808630738
294 2808886039
295 2809194379
296 2812323775
297 2812348887
298 2821270475
299 2833711454
300 2862291345
301 2863407505
302 2867437598
303 2870630810
304 2870790220
305 2875392421
306 2946024653
307 2954009359
308 2954701376
309 2954732060
310 2995727431
311 8004213674
312 8045830750

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01168

Ala_racemase_N

Alanine racemase, N-terminal domain

52

296

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
7dib-assembly1.cif.gz_A crystal structure of d-threonine aldolase from filomicrobium marinum 0.8562 36 419
6qkb-assembly1.cif.gz_B crystal structure of the beta-hydroxyaspartate aldolase of paracoccus denitrificans 0.8524 34 417
4v15-assembly1.cif.gz_B crystal structure of d-threonine aldolase from alcaligenes xylosoxidans 0.8312 34 417
7dib-assembly1.cif.gz_A crystal structure of d-threonine aldolase from filomicrobium marinum 0.8301 36 419
7dib-assembly1.cif.gz_B crystal structure of d-threonine aldolase from filomicrobium marinum 0.8296 36 418
ID Description Score Start End Superfamily
af_O06802_287_414_2.40.37.20 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;D-serine dehydratase-like domain 0.9642 294 420 2.40.37.20
af_O06802_42_286_3.20.20.10 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9503 48 292 3.20.20.10
af_O06802_287_414_2.40.37.20 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;D-serine dehydratase-like domain 0.9497 294 420 2.40.37.20
af_O06802_42_286_3.20.20.10 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9427 48 292 3.20.20.10
af_Q4DWK5_118_281_3.20.20.10 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.8053 49 150 3.20.20.10
ID Description Score Start End GO Terms
AF-A0A6B3D3Y4-F1-model_v4 Amino acid deaminase/aldolase 0.9821 28 147 GO:0008721
GO:0036088
AF-A0A4Q3XLE4-F1-model_v4 Amino acid deaminase/aldolase 0.9795 58 419 GO:0008721
GO:0036088
AF-A0A542T2E8-F1-model_v4 deleted 0.9767 45 420
AF-A0A6L9QKX0-F1-model_v4 Amino acid deaminase/aldolase 0.9752 29 420 GO:0008721
GO:0036088
AF-A0A0F0LQE4-F1-model_v4 Alanine racemase N-terminal domain-containing protein 0.9752 28 420 GO:0008721
GO:0036088

Map