F225168

General Info

Members Datasets Scaffolds Average Seq Length
156 119 133 792

Family's Representative Sequence

Representative Sequence 3300031456|Ga0307513_10024264|Ga0307513_100242646
Length 837
Sequence MNRIPAALQPLHHWLRSSIAARLLALCLGLLLIVQLASFSALREGLSRHARNGLPERLQVGERVLQSLLDQQAQALIAGARLLAADYGFREAVGSNDAETISSALANHGARIGASEVALLDPAFRLRAATGPHDAGLEPTLRHLSILAAAQGGASDVAVLHGRPSQLVLVPVKAPVIIGWVLMGFPLDGKLVDDIRSLSTINVTLLTQATPGADWKLSLSSLPAATANGLARQPWDVTPPSTPTRTATSMPSTTPPARLVSVMLDDAEIGTRVKRLTPGADRQGAAVIAVVSLSVDDAVRLPADLQMALAAITLIAFTVFVLGSIFTTRHVTTPLRALAVAAERLGAGDFSTPLPPTRLRDEIGDLTNAFEKMRVDVSDKQRQILKLAYWDPLTGLPNRTQFRDAVREAIVSATAKAGSLDNPATVSVIMLDLNRFKHVNDVLGYRFGDLVLAGVAERLTEHAVRDGDMVARLGGDEFAVLLRHGDPALALSVAQRIEAAFDLPLTLEEHTVDMGAGIGVACWPQAANDVDTLLSHAEVAMYAAKKRTSGALMYDPSIDAASAQTLSLLGELRHAVGADQLRLYLQPKLALDSGRVVGAEALVRWQHPVRGLVPPMQFIPFAEQTGFIRTLTLWVFEEAARHWTLLHRAGTRITLSVNLSTRDLLDQDLPQKFEALLVKHAVPAEAFCLEITESAIMDDPQRAQTTLDRLSARGFKLSIDDFGTGYSSLAYLKRLPVDELKIDKSFVLGMERDEDDRQIVRSTIDLAHNLGLSVVAEGVENAAAWNLLRELNCDEAQGFHMGRPMPVDDFISWAAGWATAHGTGPVVSRPTAPIVLH

Samples

Sample ID Description Type Environment
1 2510065053 Pseudomonas sp. MOIL14HWK12:I1 Isolate Rhizosphere
2 2510065055 Pseudomonas sp. MOIL14HWK12:I2 Isolate Rhizosphere
3 2510065058 Pseudomonas oleovorans MOIL14HWK12 Isolate Rhizosphere
4 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
5 2643221544 Pelomonas sp. Root1444 Isolate Unclassified
6 2643221585 Pelomonas sp. Root662 Isolate Unclassified
7 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
8 2643221644 Rhizobacter sp. Root1221 Isolate Unclassified
9 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
10 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
11 2643221656 Pelomonas sp. Root405 Isolate Unclassified
12 2643221660 Methylibium sp. Root1272 Isolate Unclassified
13 2738541337 Pelomonas sp. BT06 Isolate Unclassified
14 2773857672 Pseudomonas sp. 1766 Isolate Unclassified
15 2831864461 Roseateles noduli HZ7 Isolate Nodule
16 2886848708 Mitsuaria sp. TWR114 Isolate Rhizosphere
17 2917832318 Pseudomonas rhizoryzae RY24 Isolate Unclassified
18 2919125081 Pseudomonas psychrotolerans 1545 Isolate Rhizosphere
19 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
20 2974298342 Pseudomonas sp. SORGH_AS 211 Isolate Unclassified
21 2974320154 Acidovorax wautersii SORGH_AS 335 Isolate Unclassified
22 2984499530 Pseudomonas sp. SORGH_AS199 Isolate Aerial Root
23 2984504281 Pseudomonas psychrotolerans SORGH_AS201 Isolate Aerial Root
24 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
25 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
26 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
27 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
28 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
29 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
30 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
31 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
32 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
33 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
34 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
35 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
36 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
37 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
38 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
39 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
41 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
42 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
43 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
46 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
47 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
48 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
49 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
50 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
51 3300012497 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 Metagenome Rhizosphere
52 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
55 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
68 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
71 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
72 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
73 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
74 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
75 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
76 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
77 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
78 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
79 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
80 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
81 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
82 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
83 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
84 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
85 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
86 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
87 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
88 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
89 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
90 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
91 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
92 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
93 3300042126 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218F_E14_070516_87 Metagenome Rhizosphere
94 3300042144 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624F_E14_070516_89 Metagenome Rhizosphere
95 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
96 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
97 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
98 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
99 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
100 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
101 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
102 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
103 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
104 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
105 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
106 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
107 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
108 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
109 3300049523 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control Metagenome Rhizosphere
110 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
115 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
116 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
117 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
118 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
119 8016728285 Pseudomonas psychrotolerans SORGH_AS 227 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 84.62
Metatranscriptomes 0
Isolates 15.38

Biome Distribution

Category Percentage (%)
Aerial Root 1.28
Bulb 0
Endosphere 17.95
Nodule 1.92
Rhizoplane 3.21
Rhizosphere 50
Stem 0
Stem Tuber 0
Unclassified 25.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10048025 3300003316 Bacteria 7336
2 rootL2_10000150 3300003322 Bacteria 11891
3 rootH1_10003685 3300003316 Bacteria 49635
4 rootH1_10003685 3300003323 Bacteria 21096
5 rootH1_10036927 3300003323 Bacteria 7002
6 rootH1_10051965 3300003323 Bacteria 3141
7 Ga0055525_1000056 3300003759 Bacteria 212321
8 Ga0055526_1001621 3300003771 Bacteria 15781
9 Ga0055524_1001386 3300003775 Bacteria 13982
10 Ga0055540_1011941 3300003792 Bacteria 2759
11 Ga0055531_10001085 3300003794 Bacteria 21383
12 Ga0055531_10001900 3300003794 Bacteria 14630
13 Ga0055531_10003949 3300003794 Bacteria 9208
14 Ga0065165_1000063 3300005262 Bacteria 176477
15 Ga0065165_1000460 3300005262 Bacteria 63833
16 Ga0070670_100008848 3300005331 Bacteria 8595
17 Ga0070671_100059204 3300005355 Bacteria 3188
18 Ga0068867_100000036 3300005459 Bacteria 81113
19 Ga0070672_100040233 3300005543 Bacteria 3585
20 Ga0070672_100057581 3300005543 Bacteria 3051
21 Ga0068864_100003424 3300005618 Bacteria 13124
22 Ga0075366_10018022 3300006195 Bacteria 4075
23 Ga0097621_100002981 3300006237 Bacteria 11626
24 Ga0075370_10003075 3300006353 Bacteria 7875
25 Ga0099823_1000005 3300006944 Bacteria 139631
26 Ga0099795_10001080 3300007788 Bacteria 5639
27 Ga0105251_10003255 3300009011 Bacteria 11932
28 Ga0105240_10000602 3300009093 Bacteria 66714
29 Ga0105243_10002620 3300009148 Bacteria 14979
30 Ga0105248_10000345 3300009177 Bacteria 54458
31 Ga0105237_10000372 3300009545 Bacteria 63675
32 Ga0105238_10018763 3300009551 Bacteria 7042
33 Ga0099796_10000328 3300010159 Bacteria 7662
34 Ga0105239_10000623 3300010375 Bacteria 50370
35 Ga0157319_1000007 3300012497 Bacteria 318528
36 Ga0157371_10006808 3300013102 Bacteria 9343
37 Ga0157372_10034882 3300013307 Bacteria 5536
38 Ga0213872_10000009 3300021361 Bacteria 221470
39 Ga0213872_10000066 3300021361 Bacteria 93052
40 Ga0213872_10001528 3300021361 Bacteria 14872
41 Ga0209563_100014 3300025230 Bacteria 940582
42 Ga0209677_101874 3300025253 Bacteria 8530
43 Ga0209564_1000030 3300025295 Bacteria 503296
44 Ga0209050_1001655 3300025298 Bacteria 22650
45 Ga0209256_1000154 3300025299 Bacteria 144509
46 Ga0209256_1001455 3300025299 Bacteria 24338
47 Ga0209051_1000892 3300025303 Bacteria 29907
48 Ga0209051_1001759 3300025303 Bacteria 17206
49 Ga0209051_1006569 3300025303 Bacteria 6526
50 Ga0209051_1009908 3300025303 Bacteria 4864
51 Ga0209257_1000016 3300025304 Bacteria 908015
52 Ga0209257_1000653 3300025304 Bacteria 55049
53 Ga0209257_1002784 3300025304 Bacteria 16514
54 Ga0207695_10023074 3300025913 Bacteria 7043
55 Ga0207644_10028845 3300025931 Bacteria 3846
56 Ga0207709_10009523 3300025935 Bacteria 5345
57 Ga0207709_10014127 3300025935 Bacteria 4407
58 Ga0207648_10000037 3300026089 Bacteria 120856
59 Ga0207648_10051657 3300026089 Bacteria 3593
60 Ga0207676_10011481 3300026095 Bacteria 6333
61 Ga0209389_1001034 3300027296 Bacteria 18547
62 Ga0209179_1001668 3300027512 Bacteria 2806
63 Ga0209966_1001290 3300027695 Bacteria 4441
64 Ga0307517_10002201 3300028786 Bacteria 31538
65 Ga0307515_10000179 3300028794 Bacteria 156716
66 Ga0307515_10000586 3300028794 Bacteria 85517
67 Ga0307515_10000664 3300028794 Bacteria 79458
68 Ga0307515_10017612 3300028794 Bacteria 12995
69 Ga0307515_10035932 3300028794 Bacteria 8039
70 Ga0307512_10046162 3300030522 Bacteria 3556
71 Ga0265330_10000043 3300031235 Bacteria 116829
72 Ga0265332_10000018 3300031238 Bacteria 224913
73 Ga0265328_10006391 3300031239 Bacteria 4996
74 Ga0265325_10011025 3300031241 Bacteria 5203
75 Ga0265331_10002241 3300031250 Bacteria 13235
76 Ga0265327_10000315 3300031251 Bacteria 92454
77 Ga0265327_10001619 3300031251 Bacteria 27215
78 Ga0265316_10000361 3300031344 Bacteria 51370
79 Ga0307513_10014768 3300031456 Bacteria 9496
80 Ga0307513_10024264 3300031456 Bacteria 7058
81 Ga0307513_10029430 3300031456 Bacteria 6262
82 Ga0307408_100000006 3300031548 Bacteria 472824
83 Ga0307408_100017202 3300031548 Bacteria 4837
84 Ga0307408_100038017 3300031548 Bacteria 3394
85 Ga0307508_10000649 3300031616 Bacteria 41802
86 Ga0307508_10014592 3300031616 Bacteria 7167
87 Ga0307508_10049571 3300031616 Bacteria 3740
88 Ga0307514_10000530 3300031649 Bacteria 74660
89 Ga0265314_10000126 3300031711 Bacteria 116852
90 Ga0307516_10000373 3300031730 Bacteria 58684
91 Ga0307516_10002063 3300031730 Bacteria 27367
92 Ga0373939_0000271 3300035114 Bacteria 13851
93 Ga0373960_0001638 3300035121 Bacteria 5002
94 Ga0373962_0004355 3300035242 Bacteria 3419
95 Ga0373931_0008774 3300035691 Bacteria 4811
96 Ga0395905_0000427 3300037471 Bacteria 58785
97 Ga0395905_0003113 3300037471 Bacteria 17901
98 Ga0395905_0005489 3300037471 Bacteria 12936
99 Ga0436361_0106492 3300039447 Bacteria 11252
100 Ga0436361_0164413 3300039447 Bacteria 6089
101 Ga0436361_0427460 3300039447 Bacteria 107545
102 Ga0436361_0883585 3300039447 Bacteria 5193
103 Ga0436361_1125703 3300039447 Bacteria 66289
104 Ga0450911_000074 3300042115 Bacteria 41259
105 Ga0450888_000376 3300042126 Bacteria 4247
106 Ga0450889_000382 3300042144 Bacteria 4916
107 Ga0439459_0000508 3300042438 Bacteria 5130
108 Ga0450918_000166 3300042531 Bacteria 14753
109 Ga0453684_0063550 3300044712 Bacteria 4721
110 Ga0451576_0013249 3300045051 Bacteria 9229
111 Ga0451576_0014026 3300045051 Bacteria 8931
112 Ga0495650_0013235 3300046471 Bacteria 4377
113 Ga0495632_0004868 3300046519 Bacteria 9004
114 Ga0496102_0002932 3300048905 Bacteria 14477
115 Ga0496105_0017324 3300048908 Bacteria 5773
116 Ga0496109_0013834 3300048912 Bacteria 7011
117 Ga0496113_0017796 3300048916 Bacteria 4940
118 Ga0496115_0015456 3300048918 Bacteria 5789
119 Ga0496121_0003833 3300048924 Bacteria 20921
120 Ga0496124_0000458 3300048927 Bacteria 70719
121 Ga0496124_0003797 3300048927 Bacteria 18143
122 Ga0496125_0005492 3300048928 Bacteria 14064
123 Ga0496125_0011388 3300048928 Bacteria 8900
124 Ga0501300_000562 3300049523 Bacteria 5557
125 Ga0501043_0000012 3300049579 Bacteria 188907
126 Ga0501046_0000030 3300049580 Bacteria 187803
127 Ga0501047_0001222 3300049581 Bacteria 25487
128 Ga0501048_0002569 3300049582 Bacteria 13908
129 Ga0501045_0021982 3300049824 Bacteria 4564
130 nmdc:mga07m45_2247_c1 3300050496 Bacteria 9015
131 Ga0500658_0010475 3300053134 Bacteria 3420
132 Ga0500590_015275 3300053148 Bacteria 3962
133 Ga0500645_001838 3300053730 Bacteria 10175

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025935 Ga0207709_10014127 Ga0207709_100141273 600
2 3300026089 Ga0207648_10051657 Ga0207648_100516573 600
3 3300031730 Ga0307516_10000373 Ga0307516_1000037317 601
4 3300045051 Ga0451576_0014026 Ga0451576_0014026_3855_6137 609
5 3300007788 Ga0099795_10001080 Ga0099795_100010802 610
6 3300010159 Ga0099796_10000328 Ga0099796_100003282 610
7 3300027512 Ga0209179_1001668 Ga0209179_10016682 610
8 3300048908 Ga0496105_0017324 Ga0496105_0017324_160_2490 610
9 3300048918 Ga0496115_0015456 Ga0496115_0015456_2841_5171 610
10 3300031344 Ga0265316_10000361 Ga0265316_1000036125 612
11 3300031730 Ga0307516_10002063 Ga0307516_100020635 613
12 3300025253 Ga0209677_101874 Ga0209677_1018742 614
13 3300048905 Ga0496102_0002932 Ga0496102_0002932_10583_13033 614
14 3300028786 Ga0307517_10002201 Ga0307517_1000220126 615
15 3300028794 Ga0307515_10017612 Ga0307515_1001761213 615
16 3300046519 Ga0495632_0004868 Ga0495632_0004868_3547_5973 615
17 3300053134 Ga0500658_0010475 Ga0500658_0010475_866_3292 615
18 3300053730 Ga0500645_001838 Ga0500645_001838_4454_6853 615
19 3300048927 Ga0496124_0000458 Ga0496124_0000458_14619_17054 616
20 3300048928 Ga0496125_0005492 Ga0496125_0005492_6674_9109 616
21 3300009011 Ga0105251_10003255 Ga0105251_100032557 621
22 3300013102 Ga0157371_10006808 Ga0157371_100068083 621
23 3300013307 Ga0157372_10034882 Ga0157372_100348822 621
24 iso_pu_bacteria 2510065053 2510280857 621
25 iso_pu_bacteria 2510065055 2510295013 621
26 iso_pu_bacteria 2510065058 2510309004 621
27 iso_pu_bacteria 2773857672 2774132194 621
28 iso_pu_bacteria 2917832318 2917835148 621
29 iso_pu_bacteria 2919125081 2919130043 621
30 iso_pu_bacteria 2974298342 2974301226 621
31 iso_pu_bacteria 2984499530 2984503704 621
32 iso_pu_bacteria 2984504281 2984507716 621
33 iso_pu_bacteria 8016728285 8016730139 621
34 3300035242 Ga0373962_0004355 Ga0373962_0004355_800_2737 622
35 iso_pu_bacteria 2928115317 2928115514 624
36 3300048927 Ga0496124_0003797 Ga0496124_0003797_4134_6551 625
37 3300028794 Ga0307515_10000586 Ga0307515_1000058645 626
38 iso_pu_bacteria 2974320154 2974320866 627
39 3300031235 Ga0265330_10000043 Ga0265330_1000004386 628
40 3300031238 Ga0265332_10000018 Ga0265332_10000018197 628
41 3300031241 Ga0265325_10011025 Ga0265325_100110253 628
42 3300031711 Ga0265314_10000126 Ga0265314_1000012618 628
43 3300028794 Ga0307515_10000664 Ga0307515_1000066410 630
44 3300031649 Ga0307514_10000530 Ga0307514_1000053045 630
45 3300039447 Ga0436361_0883585 Ga0436361_0883585_97_2568 631
46 3300003775 Ga0055524_1001386 Ga0055524_10013867 632
47 3300003794 Ga0055531_10003949 Ga0055531_100039493 632
48 3300006195 Ga0075366_10018022 Ga0075366_100180222 632
49 3300006353 Ga0075370_10003075 Ga0075370_100030755 632
50 3300012497 Ga0157319_1000007 Ga0157319_1000007229 632
51 3300025299 Ga0209256_1000154 Ga0209256_1000154121 632
52 3300025304 Ga0209257_1002784 Ga0209257_10027847 632
53 3300031548 Ga0307408_100017202 Ga0307408_1000172023 632
54 3300037471 Ga0395905_0003113 Ga0395905_0003113_5927_8320 632
55 3300042438 Ga0439459_0000508 Ga0439459_0000508_1057_3471 632
56 3300044712 Ga0453684_0063550 Ga0453684_0063550_2141_4510 632
57 3300005543 Ga0070672_100057581 Ga0070672_1000575812 633
58 3300042115 Ga0450911_000074 Ga0450911_000074_28543_30939 633
59 3300042531 Ga0450918_000166 Ga0450918_000166_286_2721 633
60 3300048924 Ga0496121_0003833 Ga0496121_0003833_10025_12421 633
61 3300048928 Ga0496125_0011388 Ga0496125_0011388_5744_8140 633
62 iso_pu_bacteria 2643221644 2644246688 633
63 3300031456 Ga0307513_10029430 Ga0307513_100294304 634
64 iso_pu_bacteria 2643221544 2643741784 636
65 iso_pu_bacteria 2643221585 2643935055 636
66 iso_pu_bacteria 2643221639 2644220317 636
67 iso_pu_bacteria 2643221646 2644259241 636
68 iso_pu_bacteria 2643221656 2644316542 636
69 3300046471 Ga0495650_0013235 Ga0495650_0013235_1321_3747 637
70 3300009093 Ga0105240_10000602 Ga0105240_1000060216 638
71 3300009545 Ga0105237_10000372 Ga0105237_1000037242 638
72 3300009551 Ga0105238_10018763 Ga0105238_100187636 638
73 3300010375 Ga0105239_10000623 Ga0105239_100006238 638
74 3300021361 Ga0213872_10000066 Ga0213872_1000006657 638
75 3300025913 Ga0207695_10023074 Ga0207695_100230743 638
76 3300027695 Ga0209966_1001290 Ga0209966_10012902 638
77 3300035114 Ga0373939_0000271 Ga0373939_0000271_129_2519 638
78 3300035121 Ga0373960_0001638 Ga0373960_0001638_118_2508 638
79 3300035691 Ga0373931_0008774 Ga0373931_0008774_2304_4694 638
80 3300037471 Ga0395905_0005489 Ga0395905_0005489_9709_12147 638
81 3300039447 Ga0436361_1125703 Ga0436361_1125703_46421_48808 638
82 iso_pu_bacteria 2643221654 2644302865 638
83 iso_pu_bacteria 2643221660 2644339735 638
84 iso_pu_bacteria 2738541337 2739053508 638
85 3300028794 Ga0307515_10000179 Ga0307515_1000017953 639
86 3300030522 Ga0307512_10046162 Ga0307512_100461623 639
87 3300031456 Ga0307513_10014768 Ga0307513_100147688 639
88 3300031616 Ga0307508_10000649 Ga0307508_100006491 639
89 iso_pu_bacteria 2585428062 2587757761 639
90 3300003323 rootH1_10051965 rootH1_100519652 640
91 3300003794 Ga0055531_10001085 Ga0055531_1000108519 640
92 3300021361 Ga0213872_10000009 Ga0213872_1000000988 640
93 3300021361 Ga0213872_10001528 Ga0213872_100015288 640
94 3300025303 Ga0209051_1006569 Ga0209051_10065695 640
95 3300025304 Ga0209257_1000016 Ga0209257_1000016409 640
96 3300028794 Ga0307515_10035932 Ga0307515_100359324 640
97 3300031239 Ga0265328_10006391 Ga0265328_100063914 640
98 3300031250 Ga0265331_10002241 Ga0265331_100022418 640
99 3300031251 Ga0265327_10001619 Ga0265327_1000161923 640
100 3300031548 Ga0307408_100000006 Ga0307408_100000006261 640
101 3300039447 Ga0436361_0106492 Ga0436361_0106492_8207_10621 640
102 3300039447 Ga0436361_0164413 Ga0436361_0164413_630_3053 640
103 3300039447 Ga0436361_0427460 Ga0436361_0427460_103908_106325 640
104 3300042126 Ga0450888_000376 Ga0450888_000376_121_2514 640
105 3300042144 Ga0450889_000382 Ga0450889_000382_44_2437 640
106 3300045051 Ga0451576_0013249 Ga0451576_0013249_4552_6945 640
107 3300049523 Ga0501300_000562 Ga0501300_000562_1875_4268 640
108 3300050496 nmdc:mga07m45_2247_c1 nmdc:mga07m45_2247_c1_4855_7248 640
109 3300003759 Ga0055525_1000056 Ga0055525_100005693 641
110 3300025230 Ga0209563_100014 Ga0209563_100014100 641
111 3300031616 Ga0307508_10049571 Ga0307508_100495712 641
112 3300003792 Ga0055540_1011941 Ga0055540_10119412 642
113 3300009177 Ga0105248_10000345 Ga0105248_1000034544 642
114 3300025303 Ga0209051_1001759 Ga0209051_100175910 642
115 3300031251 Ga0265327_10000315 Ga0265327_1000031552 642
116 3300031548 Ga0307408_100038017 Ga0307408_1000380171 642
117 3300031616 Ga0307508_10014592 Ga0307508_100145926 642
118 3300037471 Ga0395905_0000427 Ga0395905_0000427_11388_13802 642
119 3300048912 Ga0496109_0013834 Ga0496109_0013834_2635_5046 642
120 3300048916 Ga0496113_0017796 Ga0496113_0017796_1283_3730 642
121 3300049579 Ga0501043_0000012 Ga0501043_0000012_18305_20731 642
122 3300049580 Ga0501046_0000030 Ga0501046_0000030_18277_20703 642
123 3300049581 Ga0501047_0001222 Ga0501047_0001222_18298_20724 642
124 3300049582 Ga0501048_0002569 Ga0501048_0002569_8543_10969 642
125 3300049824 Ga0501045_0021982 Ga0501045_0021982_737_3163 642
126 3300053148 Ga0500590_015275 Ga0500590_015275_399_2837 642
127 3300005331 Ga0070670_100008848 Ga0070670_1000088487 643
128 3300005355 Ga0070671_100059204 Ga0070671_1000592042 643
129 3300005543 Ga0070672_100040233 Ga0070672_1000402333 643
130 3300005618 Ga0068864_100003424 Ga0068864_1000034243 643
131 3300006237 Ga0097621_100002981 Ga0097621_1000029813 643
132 3300025303 Ga0209051_1009908 Ga0209051_10099082 643
133 3300025931 Ga0207644_10028845 Ga0207644_100288452 643
134 3300026095 Ga0207676_10011481 Ga0207676_100114814 643
135 3300031456 Ga0307513_10024264 Ga0307513_100242646 644
136 3300005459 Ga0068867_100000036 Ga0068867_10000003665 645
137 3300009148 Ga0105243_10002620 Ga0105243_100026205 645
138 3300025935 Ga0207709_10009523 Ga0207709_100095235 645
139 3300026089 Ga0207648_10000037 Ga0207648_1000003765 645
140 iso_pu_bacteria 2831864461 2831870161 647
141 iso_pu_bacteria 2886848708 2886852263 647
142 3300005262 Ga0065165_1000063 Ga0065165_100006363 648
143 3300003316 rootH1_10048025 rootH1_100480256 651
144 3300003322 rootL2_10000150 rootL2_100001505 651
145 3300003323 rootH1_10003685 rootH1_100036855 651
146 3300003323 rootH1_10036927 rootH1_100369275 651
147 3300003771 Ga0055526_1001621 Ga0055526_10016217 651
148 3300003794 Ga0055531_10001900 Ga0055531_100019007 651
149 3300005262 Ga0065165_1000460 Ga0065165_10004603 651
150 3300006944 Ga0099823_1000005 Ga0099823_1000005120 651
151 3300025295 Ga0209564_1000030 Ga0209564_10000303 651
152 3300025298 Ga0209050_1001655 Ga0209050_100165513 651
153 3300025299 Ga0209256_1001455 Ga0209256_10014555 651
154 3300025303 Ga0209051_1000892 Ga0209051_100089213 651
155 3300025304 Ga0209257_1000653 Ga0209257_10006535 651
156 3300027296 Ga0209389_1001034 Ga0209389_100103411 651

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00563

EAL

EAL domain

569

804

0.96

PF00672

HAMP

HAMP domain

326

379

0.95

PF14827

dCache_3

Double sensory domain of two-component sensor kinase

51

232

0.91

PF00990

GGDEF

Diguanylate cyclase, GGDEF domain

388

550

0.9

Feature Viewer

pLDDT pTM Quality
78.65 0.41 Low
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map