F219662

General Info

Members Datasets Scaffolds Average Seq Length
154 125 142 251

Family's Representative Sequence

Representative Sequence 3300013307|Ga0157372_10702906|Ga0157372_107029061
Length 275
Sequence MQMPGKRRVAPHPATNRREASMNIIVLGGSGLVGRNVVARLRAEGHQVSAASRRTGVDVVTGQGLAESLAGADVVVDVTNSPEFEGIAAFEFFEAAIFNILDAEKRAGVKHHVSLSVVGTGRLDDSPYLRGKALQERLIAASGIPFTIVHATQFFEFLRDIIASAAVGQSIRLSPAYIEPVASDDVAAIIARVAVSAPVNGSVEIAGPERERMSELIQRNVTDMEAPYDVRTDPGAPYFGAIVSESALLPDATAERGKCGYLEWLAQSEYARADW

Samples

Sample ID Description Type Environment
1 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
2 2643221562 Rhodanobacter sp. Root561 Isolate Unclassified
3 2818991450 Burkholderia sp. 604 Isolate Unclassified
4 2842918807 Luteibacter sp. R-73110 Isolate Unclassified
5 2852387548 Rhizobium jaguaris CCGE525 Isolate Unclassified
6 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
7 2901300506 Cupriavidus sp. UYMSc13B Isolate Unclassified
8 2946019816 Chryseobacterium sp. W4I1 Isolate Rhizosphere
9 2953994433 Luteibacter sp. W1I16 Isolate Rhizosphere
10 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
11 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
12 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
13 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
14 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
17 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
22 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
23 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
24 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
28 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
32 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
33 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
34 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
35 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
36 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
37 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
38 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
39 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
47 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
48 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
49 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
50 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
51 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
52 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
53 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
54 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
55 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
56 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
57 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
58 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
59 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
60 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
61 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
62 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
63 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
64 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
65 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
66 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
67 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
68 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
69 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
70 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
71 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
72 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
73 3300044672 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA3E Metagenome Unclassified
74 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
75 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
76 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
77 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
78 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
79 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
80 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
81 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
82 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
83 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
84 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
85 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
86 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
87 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
88 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
89 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
90 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
91 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
92 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
93 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
94 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
95 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
96 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
97 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
98 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
99 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
100 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
101 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
102 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
103 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
104 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
105 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
106 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
111 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
112 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
113 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
114 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
116 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
117 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
118 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
119 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
120 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
121 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
122 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
123 8046767195 Rhizobium calliandrae CCGE524 Isolate Unclassified
124 8055301274 Paraburkholderia kirstenboschensis LMG 28727 Isolate Nodule
125 8057575449 Rhizobium mayense CCGE526 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 92.21
Metatranscriptomes 0
Isolates 7.79

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.19
Nodule 1.3
Rhizoplane 1.3
Rhizosphere 81.17
Stem 0
Stem Tuber 0
Unclassified 11.04

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24738J21930_10000079 3300002075 Bacteria 21137
2 JGI25165J46597_1000047 3300003214 Bacteria 254601
3 rootH1_10258264 3300003323 Bacteria 1625
4 Ga0065165_1000343 3300005262 Bacteria 76286
5 Ga0070661_100057215 3300005344 Bacteria 2857
6 Ga0070681_10234979 3300005458 Bacteria 1747
7 Ga0081455_10021222 3300005937 Bacteria 6096
8 Ga0081540_1032912 3300005983 Bacteria 2822
9 Ga0081539_10002124 3300005985 Bacteria 29328
10 Ga0075365_10047010 3300006038 Bacteria 2836
11 Ga0075428_100401149 3300006844 Bacteria 1470
12 Ga0075434_100075084 3300006871 Bacteria 3374
13 Ga0075434_100118746 3300006871 Bacteria 2658
14 Ga0075429_100055645 3300006880 Bacteria 3442
15 Ga0075436_100062691 3300006914 Bacteria 2570
16 Ga0105251_10000765 3300009011 Bacteria 29243
17 Ga0105240_10268405 3300009093 Bacteria 1966
18 Ga0114129_10313251 3300009147 Bacteria 2088
19 Ga0105237_10116956 3300009545 Bacteria 2660
20 Ga0105237_10169216 3300009545 Bacteria 2185
21 Ga0105238_10081658 3300009551 Bacteria 3222
22 Ga0157370_10016319 3300013104 Bacteria 7523
23 Ga0157370_10143925 3300013104 Bacteria 2220
24 Ga0157369_10013523 3300013105 Bacteria 9224
25 Ga0157372_10702906 3300013307 Bacteria 1176
26 Ga0182008_10000744 3300014497 Bacteria 23006
27 Ga0182008_10000972 3300014497 Bacteria 19898
28 Ga0182008_10055064 3300014497 Bacteria 1967
29 Ga0182006_1000316 3300015261 Bacteria 42307
30 Ga0182007_10001938 3300015262 Bacteria 10712
31 Ga0182005_1008640 3300015265 Bacteria 2992
32 Ga0207427_104609 3300025231 Bacteria 2241
33 Ga0209233_1000045 3300025261 Bacteria 473379
34 Ga0207426_1032589 3300025302 Bacteria 1688
35 Ga0209051_1003851 3300025303 Bacteria 9596
36 Ga0207647_10026793 3300025904 Bacteria 3766
37 Ga0207707_10115392 3300025912 Bacteria 2347
38 Ga0207671_10100905 3300025914 Bacteria 2186
39 Ga0207660_10108487 3300025917 Bacteria 2085
40 Ga0207694_10031095 3300025924 Bacteria 4077
41 Ga0268266_10106966 3300028379 Bacteria 2473
42 Ga0265330_10070168 3300031235 Bacteria 1516
43 Ga0265332_10000053 3300031238 Bacteria 108878
44 Ga0265328_10011000 3300031239 Bacteria 3627
45 Ga0265320_10030089 3300031240 Bacteria 2804
46 Ga0265329_10010285 3300031242 Bacteria 3442
47 Ga0265339_10115082 3300031249 Bacteria 1387
48 Ga0265339_10124621 3300031249 Bacteria 1322
49 Ga0265331_10000130 3300031250 Bacteria 99140
50 Ga0265331_10002616 3300031250 Bacteria 12083
51 Ga0265316_10000085 3300031344 Bacteria 99136
52 Ga0307513_10223778 3300031456 Bacteria 1700
53 Ga0265313_10000583 3300031595 Bacteria 38024
54 Ga0265313_10095756 3300031595 Bacteria 1325
55 Ga0265314_10000540 3300031711 Bacteria 48694
56 Ga0265314_10189417 3300031711 Bacteria 1225
57 Ga0265342_10017298 3300031712 Bacteria 4693
58 Ga0265342_10038539 3300031712 Bacteria 2909
59 Ga0307405_10000040 3300031731 Bacteria 83273
60 Ga0307412_10000034 3300031911 Bacteria 206033
61 Ga0307412_10000146 3300031911 Bacteria 50831
62 Ga0307416_100000030 3300032002 Bacteria 162430
63 Ga0307510_10037353 3300033180 Bacteria 5389
64 Ga0395899_0001503 3300037312 Bacteria 19803
65 Ga0395900_0031132 3300037418 Bacteria 5481
66 Ga0395900_0221256 3300037418 Bacteria 1908
67 Ga0395898_0004506 3300037466 Bacteria 15228
68 Ga0395898_0376735 3300037466 Bacteria 1353
69 Ga0395905_0088848 3300037471 Bacteria 2896
70 Ga0436364_0802746 3300037853 Bacteria 2849
71 Ga0395901_0002101 3300038443 Bacteria 20455
72 Ga0395901_0021742 3300038443 Bacteria 6573
73 Ga0395901_0095866 3300038443 Bacteria 3109
74 Ga0439436_0000002 3300041404 Bacteria 248787
75 Ga0439436_0010139 3300041404 Bacteria 2878
76 Ga0439465_0001593 3300041413 Bacteria 7385
77 Ga0439465_0006774 3300041413 Bacteria 3639
78 Ga0451802_1287537 3300041460 Bacteria 1069
79 Ga0451837_0813162 3300041494 Bacteria 2371
80 Ga0450908_000037 3300042184 Bacteria 26513
81 Ga0466982_0000028 3300044672 Bacteria 60436
82 Ga0466961_0356648 3300044693 Bacteria 890
83 Ga0466971_0083769 3300044719 Bacteria 1456
84 Ga0466957_0401604 3300044842 Bacteria 937
85 Ga0466960_0167541 3300044901 Bacteria 1184
86 Ga0466959_0449527 3300045049 Bacteria 873
87 Ga0451576_0791770 3300045051 Bacteria 996
88 Ga0495590_0007545 3300046457 Bacteria 4192
89 Ga0495651_0235728 3300046462 Bacteria 1258
90 Ga0495650_0000253 3300046471 Bacteria 104338
91 Ga0495580_0046084 3300046472 Bacteria 3095
92 Ga0495580_0090722 3300046472 Bacteria 2127
93 Ga0495639_0203266 3300046475 Bacteria 970
94 Ga0495584_0000004 3300046491 Bacteria 314714
95 Ga0495594_0004607 3300046499 Bacteria 7101
96 Ga0495606_0004850 3300046507 Bacteria 13193
97 Ga0495606_0014987 3300046507 Bacteria 6010
98 Ga0495610_0000001 3300046512 Bacteria 1620061
99 Ga0495666_0002247 3300046526 Bacteria 9610
100 Ga0495666_0064816 3300046526 Bacteria 1743
101 Ga0495665_0100081 3300046531 Bacteria 1521
102 Ga0495586_0003975 3300046535 Bacteria 7934
103 Ga0495587_0015511 3300046536 Bacteria 4756
104 Ga0495670_0001723 3300046691 Bacteria 10768
105 Ga0495649_0001431 3300046694 Bacteria 18032
106 Ga0495604_0123412 3300047317 Bacteria 1871
107 Ga0495672_0004713 3300047320 Bacteria 11028
108 Ga0495683_0002459 3300047323 Bacteria 11183
109 Ga0495686_0000197 3300047472 Bacteria 112818
110 Ga0495626_0012194 3300048091 Bacteria 4517
111 Ga0496106_0000005 3300048909 Bacteria 273394
112 Ga0496117_0006804 3300048920 Bacteria 11391
113 Ga0496118_0005384 3300048921 Bacteria 14578
114 Ga0496119_0083394 3300048922 Bacteria 1836
115 Ga0496121_0000083 3300048924 Bacteria 226816
116 Ga0496126_0046167 3300048929 Bacteria 3998
117 Ga0501033_0012149 3300049570 Bacteria 6573
118 Ga0501037_0027498 3300049573 Bacteria 4202
119 Ga0501037_0291005 3300049573 Bacteria 1136
120 Ga0501046_0199958 3300049580 Bacteria 1487
121 Ga0501047_0159815 3300049581 Bacteria 2125
122 Ga0501047_0334258 3300049581 Bacteria 1353
123 Ga0501070_0411441 3300049586 Bacteria 1093
124 Ga0501073_0509672 3300049589 Bacteria 832
125 Ga0501223_000773 3300049663 Bacteria 7589
126 Ga0501080_0383359 3300049742 Bacteria 1266
127 Ga0501035_0009588 3300049822 Bacteria 9004
128 Ga0501035_0053395 3300049822 Bacteria 3614
129 Ga0501044_0010017 3300049823 Bacteria 10297
130 Ga0501044_0053123 3300049823 Bacteria 4170
131 nmdc:mga05p37_108763_c1 3300050507 Bacteria 3410
132 nmdc:mga05p37_251096_c1 3300050507 Bacteria 2122
133 nmdc:mga05p37_462676_c1 3300050507 Bacteria 1465
134 nmdc:mga05p37_714642_c1 3300050507 Bacteria 1111
135 nmdc:mga0qj67_426529_c1 3300050509 Bacteria 1069
136 nmdc:mga06r32_476927_c1 3300050510 Bacteria 1226
137 nmdc:mga0n895_38089_c1 3300050512 Bacteria 4657
138 nmdc:mga0rr50_161015_c1 3300050513 Bacteria 1821
139 nmdc:mga0rr50_422505_c1 3300050513 Bacteria 1128
140 nmdc:mga0rr50_578253_c1 3300050513 Bacteria 957
141 nmdc:mga08x19_84321_c1 3300050514 Bacteria 2090
142 Ga0500644_0022529 3300053088 Bacteria 1901

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300005344 Ga0070661_100057215 Ga0070661_1000572155 218
2 3300037418 Ga0395900_0031132 Ga0395900_0031132_2197_2949 218
3 3300038443 Ga0395901_0021742 Ga0395901_0021742_5518_6270 218
4 3300028379 Ga0268266_10106966 Ga0268266_101069663 219
5 3300053088 Ga0500644_0022529 Ga0500644_0022529_269_1117 219
6 3300037312 Ga0395899_0001503 Ga0395899_0001503_17033_17785 223
7 3300037466 Ga0395898_0004506 Ga0395898_0004506_11836_12588 223
8 3300038443 Ga0395901_0002101 Ga0395901_0002101_10678_11430 223
9 3300045049 Ga0466959_0449527 Ga0466959_0449527_16_687 223
10 3300005458 Ga0070681_10234979 Ga0070681_102349793 226
11 3300025912 Ga0207707_10115392 Ga0207707_101153922 226
12 3300025917 Ga0207660_10108487 Ga0207660_101084871 226
13 3300041494 Ga0451837_0813162 Ga0451837_0813162_441_1199 231
14 3300009545 Ga0105237_10169216 Ga0105237_101692161 235
15 3300009551 Ga0105238_10081658 Ga0105238_100816582 235
16 3300025914 Ga0207671_10100905 Ga0207671_101009051 235
17 3300025924 Ga0207694_10031095 Ga0207694_100310951 235
18 3300046472 Ga0495580_0046084 Ga0495580_0046084_1864_2616 237
19 3300046499 Ga0495594_0004607 Ga0495594_0004607_2391_3143 237
20 3300046526 Ga0495666_0064816 Ga0495666_0064816_202_954 237
21 3300046535 Ga0495586_0003975 Ga0495586_0003975_37_789 237
22 3300046536 Ga0495587_0015511 Ga0495587_0015511_1912_2664 237
23 3300049589 Ga0501073_0509672 Ga0501073_0509672_62_787 241
24 iso_pu_bacteria 2852643534 2852644489 243
25 iso_pu_bacteria 2585428183 2588212830 246
26 iso_pu_bacteria 2901300506 2901304617 246
27 iso_pu_bacteria 2946019816 2946020668 246
28 iso_pu_bacteria 2818991450 2819621149 247
29 iso_pu_bacteria 2852387548 2852393333 247
30 iso_pu_bacteria 8046767195 8046772248 247
31 iso_pu_bacteria 8055301274 8055304525 247
32 iso_pu_bacteria 8057575449 8057579411 247
33 3300003214 JGI25165J46597_1000047 JGI25165J46597_1000047162 249
34 3300006038 Ga0075365_10047010 Ga0075365_100470103 249
35 3300025231 Ga0207427_104609 Ga0207427_1046093 249
36 3300025261 Ga0209233_1000045 Ga0209233_1000045269 249
37 3300013104 Ga0157370_10016319 Ga0157370_100163192 250
38 3300014497 Ga0182008_10000972 Ga0182008_1000097211 250
39 3300025303 Ga0209051_1003851 Ga0209051_10038516 250
40 3300031731 Ga0307405_10000040 Ga0307405_1000004064 250
41 3300031911 Ga0307412_10000034 Ga0307412_1000003476 250
42 3300032002 Ga0307416_100000030 Ga0307416_10000003036 250
43 3300044719 Ga0466971_0083769 Ga0466971_0083769_26_778 250
44 3300046507 Ga0495606_0014987 Ga0495606_0014987_3201_3953 250
45 3300046512 Ga0495610_0000001 Ga0495610_0000001_824568_825320 250
46 3300049663 Ga0501223_000773 Ga0501223_000773_1255_2007 250
47 3300050507 nmdc:mga05p37_714642_c1 nmdc:mga05p37_714642_c1_165_917 250
48 3300050510 nmdc:mga06r32_476927_c1 nmdc:mga06r32_476927_c1_403_1155 250
49 iso_pu_bacteria 2643221562 2643830488 250
50 3300005983 Ga0081540_1032912 Ga0081540_10329121 251
51 3300005985 Ga0081539_10002124 Ga0081539_1000212421 251
52 3300006871 Ga0075434_100075084 Ga0075434_1000750843 251
53 3300006871 Ga0075434_100118746 Ga0075434_1001187463 251
54 3300006880 Ga0075429_100055645 Ga0075429_1000556454 251
55 3300006914 Ga0075436_100062691 Ga0075436_1000626912 251
56 3300009011 Ga0105251_10000765 Ga0105251_1000076531 251
57 3300009093 Ga0105240_10268405 Ga0105240_102684051 251
58 3300015262 Ga0182007_10001938 Ga0182007_100019385 251
59 3300031595 Ga0265313_10095756 Ga0265313_100957561 251
60 3300037418 Ga0395900_0221256 Ga0395900_0221256_228_983 251
61 3300037466 Ga0395898_0376735 Ga0395898_0376735_484_1239 251
62 3300038443 Ga0395901_0095866 Ga0395901_0095866_1898_2653 251
63 3300041460 Ga0451802_1287537 Ga0451802_1287537_186_944 251
64 3300044901 Ga0466960_0167541 Ga0466960_0167541_324_1079 251
65 3300045051 Ga0451576_0791770 Ga0451576_0791770_231_986 251
66 3300046457 Ga0495590_0007545 Ga0495590_0007545_618_1373 251
67 3300046462 Ga0495651_0235728 Ga0495651_0235728_169_927 251
68 3300046475 Ga0495639_0203266 Ga0495639_0203266_188_943 251
69 3300046491 Ga0495584_0000004 Ga0495584_0000004_173058_173813 251
70 3300046507 Ga0495606_0004850 Ga0495606_0004850_5816_6571 251
71 3300046694 Ga0495649_0001431 Ga0495649_0001431_6873_7628 251
72 3300047320 Ga0495672_0004713 Ga0495672_0004713_619_1374 251
73 3300047323 Ga0495683_0002459 Ga0495683_0002459_4389_5144 251
74 3300047472 Ga0495686_0000197 Ga0495686_0000197_89812_90567 251
75 3300048091 Ga0495626_0012194 Ga0495626_0012194_3262_4017 251
76 3300048909 Ga0496106_0000005 Ga0496106_0000005_72923_73678 251
77 3300048921 Ga0496118_0005384 Ga0496118_0005384_1475_2266 251
78 3300048924 Ga0496121_0000083 Ga0496121_0000083_153513_154268 251
79 3300048929 Ga0496126_0046167 Ga0496126_0046167_158_913 251
80 3300050507 nmdc:mga05p37_108763_c1 nmdc:mga05p37_108763_c1_2322_3077 251
81 3300050507 nmdc:mga05p37_462676_c1 nmdc:mga05p37_462676_c1_232_987 251
82 3300050512 nmdc:mga0n895_38089_c1 nmdc:mga0n895_38089_c1_3846_4601 251
83 3300050513 nmdc:mga0rr50_161015_c1 nmdc:mga0rr50_161015_c1_928_1683 251
84 3300050513 nmdc:mga0rr50_422505_c1 nmdc:mga0rr50_422505_c1_71_826 251
85 3300050514 nmdc:mga08x19_84321_c1 nmdc:mga08x19_84321_c1_198_956 251
86 3300006844 Ga0075428_100401149 Ga0075428_1004011492 252
87 3300009147 Ga0114129_10313251 Ga0114129_103132512 252
88 3300050507 nmdc:mga05p37_251096_c1 nmdc:mga05p37_251096_c1_638_1396 252
89 3300050509 nmdc:mga0qj67_426529_c1 nmdc:mga0qj67_426529_c1_28_786 252
90 3300050513 nmdc:mga0rr50_578253_c1 nmdc:mga0rr50_578253_c1_187_945 252
91 iso_pu_bacteria 2842918807 2842921357 252
92 iso_pu_bacteria 2953994433 2953996582 252
93 3300031250 Ga0265331_10002616 Ga0265331_100026163 253
94 3300031595 Ga0265313_10000583 Ga0265313_1000058332 253
95 3300031711 Ga0265314_10189417 Ga0265314_101894171 253
96 3300031712 Ga0265342_10017298 Ga0265342_100172982 253
97 3300003323 rootH1_10258264 rootH1_102582641 254
98 3300005262 Ga0065165_1000343 Ga0065165_100034348 254
99 3300005937 Ga0081455_10021222 Ga0081455_100212227 254
100 3300013104 Ga0157370_10143925 Ga0157370_101439252 254
101 3300013105 Ga0157369_10013523 Ga0157369_100135236 254
102 3300013307 Ga0157372_10702906 Ga0157372_107029061 254
103 3300025302 Ga0207426_1032589 Ga0207426_10325892 254
104 3300025904 Ga0207647_10026793 Ga0207647_100267934 254
105 3300031235 Ga0265330_10070168 Ga0265330_100701683 254
106 3300031238 Ga0265332_10000053 Ga0265332_100000533 254
107 3300031239 Ga0265328_10011000 Ga0265328_100110004 254
108 3300031240 Ga0265320_10030089 Ga0265320_100300893 254
109 3300031242 Ga0265329_10010285 Ga0265329_100102853 254
110 3300031249 Ga0265339_10115082 Ga0265339_101150822 254
111 3300031249 Ga0265339_10124621 Ga0265339_101246212 254
112 3300031250 Ga0265331_10000130 Ga0265331_1000013077 254
113 3300031344 Ga0265316_10000085 Ga0265316_1000008577 254
114 3300031456 Ga0307513_10223778 Ga0307513_102237782 254
115 3300031711 Ga0265314_10000540 Ga0265314_1000054043 254
116 3300031712 Ga0265342_10038539 Ga0265342_100385393 254
117 3300033180 Ga0307510_10037353 Ga0307510_100373535 254
118 3300037471 Ga0395905_0088848 Ga0395905_0088848_182_949 254
119 3300037853 Ga0436364_0802746 Ga0436364_0802746_1038_1811 254
120 3300041404 Ga0439436_0010139 Ga0439436_0010139_1898_2668 254
121 3300041413 Ga0439465_0001593 Ga0439465_0001593_2881_3651 254
122 3300044672 Ga0466982_0000028 Ga0466982_0000028_20188_20952 254
123 3300044693 Ga0466961_0356648 Ga0466961_0356648_27_794 254
124 3300044842 Ga0466957_0401604 Ga0466957_0401604_156_923 254
125 3300046471 Ga0495650_0000253 Ga0495650_0000253_31444_32217 254
126 3300046472 Ga0495580_0090722 Ga0495580_0090722_722_1498 254
127 3300046526 Ga0495666_0002247 Ga0495666_0002247_613_1389 254
128 3300046531 Ga0495665_0100081 Ga0495665_0100081_38_814 254
129 3300047317 Ga0495604_0123412 Ga0495604_0123412_418_1194 254
130 3300048920 Ga0496117_0006804 Ga0496117_0006804_9155_9922 254
131 3300049570 Ga0501033_0012149 Ga0501033_0012149_126_890 254
132 3300049573 Ga0501037_0027498 Ga0501037_0027498_3268_4032 254
133 3300049573 Ga0501037_0291005 Ga0501037_0291005_68_832 254
134 3300049580 Ga0501046_0199958 Ga0501046_0199958_611_1375 254
135 3300049581 Ga0501047_0159815 Ga0501047_0159815_800_1615 254
136 3300049581 Ga0501047_0334258 Ga0501047_0334258_102_866 254
137 3300049586 Ga0501070_0411441 Ga0501070_0411441_107_871 254
138 3300049742 Ga0501080_0383359 Ga0501080_0383359_304_1119 254
139 3300049822 Ga0501035_0009588 Ga0501035_0009588_6778_7542 254
140 3300049822 Ga0501035_0053395 Ga0501035_0053395_796_1560 254
141 3300049823 Ga0501044_0010017 Ga0501044_0010017_8707_9471 254
142 3300049823 Ga0501044_0053123 Ga0501044_0053123_43_807 254
143 3300002075 JGI24738J21930_10000079 JGI24738J21930_100000791 256
144 3300009545 Ga0105237_10116956 Ga0105237_101169561 256
145 3300014497 Ga0182008_10000744 Ga0182008_1000074418 256
146 3300014497 Ga0182008_10055064 Ga0182008_100550642 256
147 3300015261 Ga0182006_1000316 Ga0182006_10003166 256
148 3300015265 Ga0182005_1008640 Ga0182005_10086401 256
149 3300031911 Ga0307412_10000146 Ga0307412_1000014643 256
150 3300041404 Ga0439436_0000002 Ga0439436_0000002_26379_27149 256
151 3300041413 Ga0439465_0006774 Ga0439465_0006774_438_1208 256
152 3300042184 Ga0450908_000037 Ga0450908_000037_14289_15059 256
153 3300046691 Ga0495670_0001723 Ga0495670_0001723_3775_4545 256
154 3300048922 Ga0496119_0083394 Ga0496119_0083394_695_1465 256

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05368

NmrA

NmrA-like family

24

198

0.83

PF13460

NAD_binding_10

NAD(P)H-binding

28

196

0.75

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

24

149

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
6jkh-assembly1.cif.gz_B the nad+-bound form of human nsdhl 0.8435 2 131
5xtb-assembly1.cif.gz_J cryo-em structure of human respiratory complex i matrix arm 0.8268 1 214
6jkh-assembly1.cif.gz_A the nad+-bound form of human nsdhl 0.8189 2 132
5gup-assembly1.cif.gz_L cryo-em structure of mammalian respiratory supercomplex i1iii2iv1 0.8094 1 213
7ard-assembly1.cif.gz_P cryo-em structure of polytomella complex-i (complete composition) 0.7947 2 213
ID Description Score Start End Superfamily
af_A0A1D6GVM8_196_300_3.40.50.20 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8233 1 86 3.40.50.20
af_I1KG15_128_276_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8204 1 86 3.40.50.720
af_I1KVW6_141_273_3.40.50.20 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8191 1 86 3.40.50.20
af_P75822_3_266_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8152 1 214 3.40.50.720
af_Q9N3H3_46_282_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8021 2 185 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A0G9H2P4-F1-model_v4 NmrA family transcriptional regulator 0.9919 1 256 GO:0044877
GO:1901006
AF-A0A0G9H2P4-F1-model_v4 NmrA family transcriptional regulator 0.9881 1 256 GO:0044877
GO:1901006
AF-A0A532ETL8-F1-model_v4 NAD(P)-dependent oxidoreductase 0.9872 1 80
AF-A0A4V1T6H8-F1-model_v4 deleted 0.9843 1 91
AF-A0A2V5WFZ3-F1-model_v4 NmrA family transcriptional regulator 0.9836 1 93

Feature Viewer

pLDDT pTM Quality
94.37 0.92 High
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Predicted Structure (AlphaFold2)

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