F218562

General Info

Members Datasets Scaffolds Average Seq Length
154 133 116 395

Family's Representative Sequence

Representative Sequence 3300003775|Ga0055524_1006104|Ga0055524_10061044
Length 407
Sequence MDSLITAAGRALAAGDPFGALNRVALREDAPALALRGIAMAQLGDLDRAKVLLRRAGRAFGPREPVARARCVVAEAEIALVSRDLGWPAKALDAARATLEAHGDRLNAAHARTIELRRLLLIGRLDEAERLLSGFDARPLPPALEAARSLAIGGIALRRLQAGLAGEAFARATAAAQRAGIPALAAEVDAASRVLGAPAARLIAGGEGRPLMLGEVAALLAAGDGFIVDACRNVVRAAGSVVPLATRPVLFALARTLAEAWPADASREVLLARAFRAKEADESHRARLRVEIGRLRAELHGLATINATSRGFALVPHRAAKVAVLAQPLEEPHADVLALLSDGEAWSSSALALALGTSQRNMQRALEALARAGKVQSFGKARARRWLTPPVPGFPTSLLLPAPLPDG

Samples

Sample ID Description Type Environment
1 2510917013 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
2 2510917014 Paraburkholderia silvatlantica SRMrh-20 Isolate Unclassified
3 2510917015 Paraburkholderia silvatlantica PVA5 Isolate Unclassified
4 2643221562 Rhodanobacter sp. Root561 Isolate Unclassified
5 2643221688 Rhizobium sp. Root482 Isolate Unclassified
6 2643221736 Bosea sp. Root483D1 Isolate Unclassified
7 2690316117 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
8 2738543025 Pseudomonas sp. GV091 Isolate Unclassified
9 2751185821 Ensifer shofinae CCBAU 251167 Isolate Unclassified
10 2791355091 Sinorhizobium sp. FG01 Isolate Nodule
11 2791355092 Sinorhizobium sp. NG07B Isolate Nodule
12 2838022645 Rhizobium aethiopicum SEMIA 4074 Isolate Nodule
13 2841760612 Bosea sp. Tri-49 Isolate Nodule
14 2842198810 Rhizobium aethiopicum SEMIA 470 Isolate Nodule
15 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
16 2844104063 Bosea sp. Tri-39 Isolate Nodule
17 2847417321 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
18 2848992105 Sinorhizobium fredii CCBAU 25509 Isolate Unclassified
19 2851182111 Bosea sp. Tri-44 Isolate Nodule
20 2851246043 Bosea sp. Tri-54 Isolate Nodule
21 2855872281 Sinorhizobium fredii PCH1 Isolate Nodule
22 2881155292 Mesorhizobium sp. M4B.F.Ca.ET.058.02.1.1 Isolate Nodule
23 2885266251 Ralstonia sp. SET104 Isolate Nodule
24 2885342637 Mesorhizobium sp. M4A.F.Ca.ET.050.02.1.1 Isolate Nodule
25 2885350715 Mesorhizobium sp. M4A.F.Ca.ET.022.05.2.1 Isolate Nodule
26 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
27 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
28 2919450847 Ancylobacter sp. 3268 Isolate Rhizosphere
29 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
30 2961127735 Mesorhizobium sp. M4A.F.Ca.ET.029.04.2.1 Isolate Nodule
31 3005409236 Rhizobium sp. P32RR-XVIII Isolate Rhizosphere
32 3300002076 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3 Metagenome Rhizosphere
33 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
34 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
35 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
36 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
37 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
38 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
39 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
40 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
41 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
42 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
43 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
44 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
45 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
46 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
47 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
48 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
49 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
50 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
51 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
52 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
53 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
54 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
55 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
57 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
58 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
59 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
60 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
61 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
62 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
63 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
64 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
65 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
66 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
67 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
68 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
69 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
83 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
85 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
86 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
87 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
88 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
89 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
90 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
91 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
92 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
93 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
94 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
95 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
96 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
97 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
98 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
99 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
100 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
101 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
102 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
103 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
104 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
105 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
106 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
107 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
108 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
109 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
110 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
111 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
112 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
113 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
114 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
115 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
120 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
121 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
122 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
123 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
124 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
125 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
126 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
127 642555112 Paraburkholderia phymatum STM815 Isolate Nodule
128 643692032 Sinorhizobium fredii NGR234 Isolate Nodule
129 8023680758 Rhizobium leguminosarum SARCC-132 Isolate Nodule
130 8046767195 Rhizobium calliandrae CCGE524 Isolate Unclassified
131 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified
132 8057529695 Bosea vestrisii A18/4-2 Isolate Nodule
133 8057575449 Rhizobium mayense CCGE526 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 75.32
Metatranscriptomes 0
Isolates 24.68

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.14
Nodule 14.94
Rhizoplane 0
Rhizosphere 66.23
Stem 0
Stem Tuber 0
Unclassified 11.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24749J21850_1000021 3300002076 Bacteria 30737
2 JGI24751J29686_10000610 3300002459 Bacteria 9361
3 Ga0055526_1000165 3300003771 Bacteria 58505
4 Ga0055524_1006104 3300003775 Bacteria 5275
5 Ga0065165_1000410 3300005262 Bacteria 68475
6 Ga0065707_10082787 3300005295 Bacteria 12139
7 Ga0070670_100000031 3300005331 Bacteria 159070
8 Ga0070670_100031170 3300005331 Bacteria 4592
9 Ga0070691_10036041 3300005341 Bacteria 2331
10 Ga0070669_100000015 3300005353 Bacteria 197597
11 Ga0070669_100161634 3300005353 Bacteria 1741
12 Ga0070675_100034179 3300005354 Bacteria 4124
13 Ga0070667_100020102 3300005367 Bacteria 5544
14 Ga0070706_100156732 3300005467 Bacteria 2126
15 Ga0070679_100339658 3300005530 Bacteria 1450
16 Ga0070665_100021663 3300005548 Bacteria 6464
17 Ga0068864_100000001 3300005618 Bacteria 686767
18 Ga0068864_100000248 3300005618 Bacteria 48142
19 Ga0068860_100068311 3300005843 Bacteria 3376
20 Ga0068862_100000006 3300005844 Bacteria 346828
21 Ga0097621_100033022 3300006237 Bacteria 4118
22 Ga0097621_100316481 3300006237 Bacteria 1381
23 Ga0068871_100022000 3300006358 Bacteria 4912
24 Ga0068871_100056754 3300006358 Bacteria 3184
25 Ga0075434_100355437 3300006871 Bacteria 1486
26 Ga0068865_100090713 3300006881 Bacteria 2216
27 Ga0099826_10000002 3300006948 Bacteria 1125830
28 Ga0105240_10086810 3300009093 Bacteria 3832
29 Ga0111539_10115288 3300009094 Bacteria 3151
30 Ga0105241_10007659 3300009174 Bacteria 7940
31 Ga0105248_10000066 3300009177 Bacteria 121254
32 Ga0105237_10195772 3300009545 Bacteria 2021
33 Ga0105238_10028886 3300009551 Bacteria 5649
34 Ga0105238_10189138 3300009551 Bacteria 2035
35 Ga0105246_10017696 3300011119 Bacteria 4533
36 Ga0163162_10021114 3300013306 Bacteria 6406
37 Ga0163163_10000113 3300014325 Bacteria 86256
38 Ga0163163_10061729 3300014325 Bacteria 3713
39 Ga0163163_10293957 3300014325 Bacteria 1677
40 Ga0157380_10000124 3300014326 Bacteria 42926
41 Ga0157379_10000279 3300014968 Bacteria 40378
42 Ga0213872_10001744 3300021361 Bacteria 13658
43 Ga0213872_10005474 3300021361 Bacteria 6526
44 Ga0209130_1000130 3300025284 Bacteria 121749
45 Ga0209564_1000019 3300025295 Bacteria 573686
46 Ga0209564_1012991 3300025295 Bacteria 3576
47 Ga0209256_1000007 3300025299 Bacteria 1136599
48 Ga0209256_1000215 3300025299 Bacteria 106454
49 Ga0207643_10159477 3300025908 Bacteria 1356
50 Ga0207654_10021167 3300025911 Bacteria 3455
51 Ga0207671_10079154 3300025914 Bacteria 2462
52 Ga0207671_10202493 3300025914 Bacteria 1551
53 Ga0207663_10095255 3300025916 Bacteria 1985
54 Ga0207681_10000001 3300025923 Bacteria 1105841
55 Ga0207650_10000055 3300025925 Bacteria 158325
56 Ga0207650_10203192 3300025925 Bacteria 1588
57 Ga0207659_10009957 3300025926 Bacteria 5953
58 Ga0207711_10003204 3300025941 Bacteria 14262
59 Ga0207689_10152607 3300025942 Bacteria 1904
60 Ga0207658_10002544 3300025986 Bacteria 13258
61 Ga0207676_10000002 3300026095 Bacteria 1198607
62 Ga0207676_10000004 3300026095 Bacteria 725417
63 Ga0207674_10139406 3300026116 Bacteria 2385
64 Ga0207674_10224991 3300026116 Bacteria 1825
65 Ga0207675_100000818 3300026118 Bacteria 30959
66 Ga0209282_1000001 3300027666 Bacteria 2450367
67 Ga0268265_10000002 3300028380 Bacteria 1035381
68 Ga0265338_10000225 3300028800 Bacteria 105326
69 Ga0307511_10001472 3300030521 Bacteria 24899
70 Ga0307407_10019831 3300031903 Bacteria 3431
71 Ga0307412_10004950 3300031911 Bacteria 7443
72 Ga0307409_100014980 3300031995 Bacteria 5068
73 Ga0307411_10022975 3300032005 Bacteria 3683
74 Ga0395899_0019729 3300037312 Bacteria 5118
75 Ga0395900_0008782 3300037418 Bacteria 10385
76 Ga0395898_0026824 3300037466 Bacteria 5790
77 Ga0395898_0054437 3300037466 Bacteria 3904
78 Ga0395901_0051064 3300038443 Bacteria 4297
79 Ga0436365_1874497 3300039437 Bacteria 1980
80 Ga0436361_0217328 3300039447 Bacteria 5249
81 Ga0436361_0663081 3300039447 Bacteria 3594
82 Ga0436363_1590412 3300039450 Bacteria 3101
83 Ga0439461_0006461 3300041410 Bacteria 2042
84 Ga0466966_0017098 3300044684 Bacteria 4798
85 Ga0466961_0005928 3300044693 Bacteria 7745
86 Ga0466961_0121449 3300044693 Bacteria 1640
87 Ga0495580_0060468 3300046472 Bacteria 2661
88 Ga0495664_0085239 3300046477 Bacteria 1897
89 Ga0495606_0169491 3300046507 Bacteria 1268
90 Ga0495608_0055804 3300046511 Bacteria 2610
91 Ga0495632_0043914 3300046519 Bacteria 2232
92 Ga0495632_0045753 3300046519 Bacteria 2178
93 Ga0495637_0020227 3300046520 Bacteria 3065
94 Ga0495648_0091717 3300046524 Bacteria 1698
95 Ga0495654_0032008 3300046530 Bacteria 2667
96 Ga0495667_0086223 3300046559 Bacteria 2037
97 Ga0495599_0068827 3300046678 Bacteria 2210
98 Ga0495686_0048381 3300047472 Bacteria 2681
99 Ga0495626_0032309 3300048091 Bacteria 2514
100 Ga0496116_0002073 3300048919 Bacteria 21454
101 Ga0496121_0132634 3300048924 Bacteria 1861
102 Ga0495678_009714 3300049459 Bacteria 4726
103 Ga0501032_0102510 3300049569 Bacteria 1896
104 Ga0501033_0019741 3300049570 Bacteria 5093
105 Ga0501037_0046261 3300049573 Bacteria 3192
106 Ga0501047_0000999 3300049581 Bacteria 28567
107 Ga0501047_0033678 3300049581 Bacteria 4944
108 Ga0501047_0151524 3300049581 Bacteria 2195
109 Ga0501077_0066099 3300049593 Bacteria 2294
110 Ga0501079_0030599 3300049741 Bacteria 4137
111 Ga0501081_0140686 3300049743 Bacteria 1729
112 Ga0501035_0155346 3300049822 Bacteria 1983
113 nmdc:mga0a205_77172_c1 3300050515 Bacteria 3219
114 Ga0500595_000075 3300053119 Bacteria 69432
115 Ga0500658_0004472 3300053134 Bacteria 5218
116 Ga0500573_0000054 3300053140 Bacteria 85434

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025914 Ga0207671_10202493 Ga0207671_102024932 334
2 3300039450 Ga0436363_1590412 Ga0436363_1590412_157_1164 334
3 3300046472 Ga0495580_0060468 Ga0495580_0060468_1607_2632 340
4 3300046524 Ga0495648_0091717 Ga0495648_0091717_640_1665 340
5 3300048091 Ga0495626_0032309 Ga0495626_0032309_1461_2486 340
6 3300048924 Ga0496121_0132634 Ga0496121_0132634_46_1071 340
7 3300053134 Ga0500658_0004472 Ga0500658_0004472_2668_3888 350
8 iso_pu_bacteria 2885342637 2885349017 350
9 3300037466 Ga0395898_0054437 Ga0395898_0054437_1173_2393 354
10 3300038443 Ga0395901_0051064 Ga0395901_0051064_1997_3217 354
11 3300021361 Ga0213872_10005474 Ga0213872_100054742 355
12 3300039447 Ga0436361_0217328 Ga0436361_0217328_539_1744 355
13 iso_pu_bacteria 8057529695 8057535122 357
14 3300046477 Ga0495664_0085239 Ga0495664_0085239_772_1875 366
15 3300049570 Ga0501033_0019741 Ga0501033_0019741_3006_4118 368
16 3300049573 Ga0501037_0046261 Ga0501037_0046261_2029_3141 368
17 3300049581 Ga0501047_0033678 Ga0501047_0033678_798_1910 368
18 3300025916 Ga0207663_10095255 Ga0207663_100952552 369
19 3300047472 Ga0495686_0048381 Ga0495686_0048381_521_1741 369
20 3300031903 Ga0307407_10019831 Ga0307407_100198312 375
21 3300031995 Ga0307409_100014980 Ga0307409_1000149804 375
22 3300032005 Ga0307411_10022975 Ga0307411_100229752 375
23 3300039447 Ga0436361_0663081 Ga0436361_0663081_1829_3034 375
24 3300014325 Ga0163163_10293957 Ga0163163_102939571 378
25 3300031911 Ga0307412_10004950 Ga0307412_100049506 378
26 3300050515 nmdc:mga0a205_77172_c1 nmdc:mga0a205_77172_c1_474_1640 378
27 3300037312 Ga0395899_0019729 Ga0395899_0019729_483_1703 379
28 3300037418 Ga0395900_0008782 Ga0395900_0008782_4881_6101 379
29 3300037466 Ga0395898_0026824 Ga0395898_0026824_945_2165 379
30 3300039437 Ga0436365_1874497 Ga0436365_1874497_36_1253 382
31 3300049822 Ga0501035_0155346 Ga0501035_0155346_740_1960 384
32 3300021361 Ga0213872_10001744 Ga0213872_100017443 385
33 3300014325 Ga0163163_10000113 Ga0163163_1000011360 386
34 3300053119 Ga0500595_000075 Ga0500595_000075_17246_18466 388
35 3300014968 Ga0157379_10000279 Ga0157379_1000027931 389
36 3300030521 Ga0307511_10001472 Ga0307511_1000147217 389
37 3300006871 Ga0075434_100355437 Ga0075434_1003554372 392
38 3300026116 Ga0207674_10139406 Ga0207674_101394061 392
39 3300041410 Ga0439461_0006461 Ga0439461_0006461_788_2008 393
40 3300049569 Ga0501032_0102510 Ga0501032_0102510_30_1250 393
41 3300049581 Ga0501047_0000999 Ga0501047_0000999_11193_12413 393
42 3300049593 Ga0501077_0066099 Ga0501077_0066099_111_1331 393
43 3300049741 Ga0501079_0030599 Ga0501079_0030599_2820_4040 393
44 3300049743 Ga0501081_0140686 Ga0501081_0140686_81_1301 393
45 3300002459 JGI24751J29686_10000610 JGI24751J29686_100006106 395
46 3300005331 Ga0070670_100000031 Ga0070670_10000003142 395
47 3300005618 Ga0068864_100000248 Ga0068864_10000024842 395
48 3300025925 Ga0207650_10000055 Ga0207650_1000005542 395
49 3300026095 Ga0207676_10000004 Ga0207676_10000004125 395
50 3300005295 Ga0065707_10082787 Ga0065707_100827873 396
51 3300005353 Ga0070669_100000015 Ga0070669_100000015149 396
52 3300005844 Ga0068862_100000006 Ga0068862_100000006196 396
53 3300025923 Ga0207681_10000001 Ga0207681_10000001871 396
54 3300026118 Ga0207675_100000818 Ga0207675_1000008185 396
55 3300028380 Ga0268265_10000002 Ga0268265_10000002921 396
56 3300009094 Ga0111539_10115288 Ga0111539_101152883 398
57 iso_pu_bacteria 2738543025 2739316917 398
58 3300005262 Ga0065165_1000410 Ga0065165_100041052 399
59 3300025284 Ga0209130_1000130 Ga0209130_10001304 399
60 iso_pu_bacteria 2929199973 2929202913 399
61 iso_pu_bacteria 8055909800 8055911998 399
62 iso_pu_bacteria 2690316117 2692317215 400
63 iso_pu_bacteria 2791355091 2792622419 400
64 iso_pu_bacteria 2791355092 2792628012 400
65 iso_pu_bacteria 2847417321 2847417717 400
66 iso_pu_bacteria 2848992105 2848992522 400
67 iso_pu_bacteria 2855872281 2855874497 400
68 iso_pu_bacteria 643692032 643824576 400
69 iso_pu_bacteria 2643221688 2644495278 401
70 iso_pu_bacteria 2643221736 2644744809 401
71 iso_pu_bacteria 2751185821 2753461384 401
72 iso_pu_bacteria 2838022645 2838028558 401
73 iso_pu_bacteria 2841760612 2841762868 401
74 iso_pu_bacteria 2842198810 2842204586 401
75 iso_pu_bacteria 2842509118 2842512358 401
76 iso_pu_bacteria 2844104063 2844110124 401
77 iso_pu_bacteria 2851182111 2851182160 401
78 iso_pu_bacteria 2851246043 2851251786 401
79 iso_pu_bacteria 2881155292 2881156737 401
80 iso_pu_bacteria 2885266251 2885267172 401
81 iso_pu_bacteria 2885350715 2885356820 401
82 iso_pu_bacteria 2899792073 2899795574 401
83 iso_pu_bacteria 2915650412 2915654449 401
84 iso_pu_bacteria 2919450847 2919456072 401
85 iso_pu_bacteria 2961127735 2961132061 401
86 iso_pu_bacteria 3005409236 3005415003 401
87 iso_pu_bacteria 642555112 642598139 401
88 iso_pu_bacteria 8023680758 8023683354 401
89 iso_pu_bacteria 8046767195 8046771202 401
90 iso_pu_bacteria 8057575449 8057578747 401
91 3300046519 Ga0495632_0043914 Ga0495632_0043914_591_1802 402
92 3300046520 Ga0495637_0020227 Ga0495637_0020227_1678_2889 402
93 3300046530 Ga0495654_0032008 Ga0495654_0032008_491_1702 402
94 3300048919 Ga0496116_0002073 Ga0496116_0002073_5863_7074 402
95 3300049459 Ga0495678_009714 Ga0495678_009714_690_1901 402
96 iso_pu_bacteria 2510917013 2511092874 403
97 iso_pu_bacteria 2510917014 2511097810 403
98 iso_pu_bacteria 2510917015 2511109267 403
99 3300003771 Ga0055526_1000165 Ga0055526_10001655 405
100 3300003775 Ga0055524_1006104 Ga0055524_10061044 405
101 3300005331 Ga0070670_100031170 Ga0070670_1000311704 405
102 3300005341 Ga0070691_10036041 Ga0070691_100360413 405
103 3300005353 Ga0070669_100161634 Ga0070669_1001616342 405
104 3300005354 Ga0070675_100034179 Ga0070675_1000341792 405
105 3300005530 Ga0070679_100339658 Ga0070679_1003396581 405
106 3300005548 Ga0070665_100021663 Ga0070665_1000216635 405
107 3300005618 Ga0068864_100000001 Ga0068864_10000000152 405
108 3300005843 Ga0068860_100068311 Ga0068860_1000683112 405
109 3300006237 Ga0097621_100033022 Ga0097621_1000330224 405
110 3300006237 Ga0097621_100316481 Ga0097621_1003164811 405
111 3300006358 Ga0068871_100022000 Ga0068871_1000220002 405
112 3300006358 Ga0068871_100056754 Ga0068871_1000567543 405
113 3300006881 Ga0068865_100090713 Ga0068865_1000907133 405
114 3300006948 Ga0099826_10000002 Ga0099826_10000002305 405
115 3300009093 Ga0105240_10086810 Ga0105240_100868106 405
116 3300009174 Ga0105241_10007659 Ga0105241_100076592 405
117 3300009545 Ga0105237_10195772 Ga0105237_101957722 405
118 3300009551 Ga0105238_10028886 Ga0105238_100288863 405
119 3300009551 Ga0105238_10189138 Ga0105238_101891382 405
120 3300011119 Ga0105246_10017696 Ga0105246_100176964 405
121 3300013306 Ga0163162_10021114 Ga0163162_100211147 405
122 3300014325 Ga0163163_10061729 Ga0163163_100617293 405
123 3300025295 Ga0209564_1000019 Ga0209564_1000019433 405
124 3300025295 Ga0209564_1012991 Ga0209564_10129912 405
125 3300025299 Ga0209256_1000007 Ga0209256_1000007504 405
126 3300025299 Ga0209256_1000215 Ga0209256_100021515 405
127 3300025908 Ga0207643_10159477 Ga0207643_101594771 405
128 3300025911 Ga0207654_10021167 Ga0207654_100211672 405
129 3300025914 Ga0207671_10079154 Ga0207671_100791542 405
130 3300025925 Ga0207650_10203192 Ga0207650_102031922 405
131 3300025926 Ga0207659_10009957 Ga0207659_100099574 405
132 3300025942 Ga0207689_10152607 Ga0207689_101526072 405
133 3300026095 Ga0207676_10000002 Ga0207676_10000002782 405
134 3300026116 Ga0207674_10224991 Ga0207674_102249912 405
135 3300027666 Ga0209282_1000001 Ga0209282_1000001844 405
136 3300028800 Ga0265338_10000225 Ga0265338_1000022569 405
137 3300044684 Ga0466966_0017098 Ga0466966_0017098_2960_4180 405
138 3300044693 Ga0466961_0005928 Ga0466961_0005928_3347_4567 405
139 3300044693 Ga0466961_0121449 Ga0466961_0121449_379_1599 405
140 3300046507 Ga0495606_0169491 Ga0495606_0169491_35_1255 405
141 3300046511 Ga0495608_0055804 Ga0495608_0055804_1214_2434 405
142 3300046519 Ga0495632_0045753 Ga0495632_0045753_231_1523 405
143 3300046559 Ga0495667_0086223 Ga0495667_0086223_674_1894 405
144 3300046678 Ga0495599_0068827 Ga0495599_0068827_945_2165 405
145 3300049581 Ga0501047_0151524 Ga0501047_0151524_403_1638 405
146 3300053140 Ga0500573_0000054 Ga0500573_0000054_42184_43404 405
147 iso_pu_bacteria 2643221562 2643828733 405
148 3300002076 JGI24749J21850_1000021 JGI24749J21850_10000219 406
149 3300005367 Ga0070667_100020102 Ga0070667_1000201026 406
150 3300005467 Ga0070706_100156732 Ga0070706_1001567322 406
151 3300009177 Ga0105248_10000066 Ga0105248_10000066109 406
152 3300014326 Ga0157380_10000124 Ga0157380_1000012418 406
153 3300025941 Ga0207711_10003204 Ga0207711_100032044 406
154 3300025986 Ga0207658_10002544 Ga0207658_100025443 406

Structural Annotation

Top 5 Hits

ID Description Score Start End
4lb5-assembly1.cif.gz_A-2 crystal structure of pkz zalpha in complex with ds(cg)6 (hexagonal form) 0.9457 333 387
2d1h-assembly1.cif.gz_B crystal structure of st1889 protein from thermoacidophilic archaeon sulfolobus tokodaii 0.9345 346 389
2vxz-assembly1.cif.gz_A crystal structure of hypothetical protein pyrsv_gp04 from pyrobaculum spherical virus 0.9249 333 387
3f72-assembly2.cif.gz_C crystal structure of the staphylococcus aureus pi258 cadc metal binding site 2 mutant 0.9247 329 387
5fb2-assembly1.cif.gz_A s. aureus mepr f27l mutant bound to oligodeoxyribonucleotide 0.9183 346 389
ID Description Score Start End Superfamily
4lb5A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9457 333 387 1.10.10.10
af_A0A2R8PZK5_904_1051_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.9317 30 134 1.25.40.10
2vxzA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9281 333 387 1.10.10.10
af_E9QIW2_242_317_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9184 332 389 1.10.10.10
af_Q58948_3_81_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9167 334 389 1.10.10.10
ID Description Score Start End GO Terms
AF-K0VK31-F1-model_v4 Helix-turn-helix domain-containing protein 0.9704 1 222
AF-K0VK31-F1-model_v4 Helix-turn-helix domain-containing protein 0.9662 1 222
AF-A0A4Q5VAZ9-F1-model_v4 deleted 0.9627 1 372
AF-A0A519GCA7-F1-model_v4 deleted 0.9609 46 406
AF-A0A3S2HCK3-F1-model_v4 deleted 0.9546 1 181

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pLDDT pTM Quality
86.18 0.83 High
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Predicted Structure (AlphaFold2)

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