F217692

General Info

Members Datasets Scaffolds Average Seq Length
153 80 306 155

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0306912|Ga0451577_0306912_548_1045
Length 165
Sequence MQILFKDSNMPTTFLTKEGFQKLQDELEYLRSVKRQEVANRLHEAMEGGELIENAEYEAAKNEQAFVEGRIQELEIILATARIIDENETHKGDLVQVGATVTIQEDGSSSKEVYTIVGAAEANPREGKISNESPIGKAILGHHKGDDVQVEAPGGSYKVRIVKVE

Samples

Sample ID Description Type Environment
1 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
6 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
7 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
8 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
9 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
10 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
11 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
12 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
13 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
14 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
15 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
18 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
19 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
22 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
23 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
24 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
25 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
26 3300009987 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_213 metaG Metagenome Rhizosphere
27 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
28 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
29 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
30 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
31 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
41 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
42 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
43 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
44 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
45 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
46 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
47 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
48 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
49 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
50 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
51 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
52 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
53 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
54 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
55 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
56 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
57 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
58 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
59 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
60 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
61 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
63 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
64 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
65 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
66 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
67 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
68 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
69 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
70 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
71 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
72 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
73 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
74 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
77 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
78 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
79 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
80 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.69
Metatranscriptomes 1.31
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.96
Nodule 0
Rhizoplane 1.31
Rhizosphere 95.42
Stem 0
Stem Tuber 0
Unclassified 20.92

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451577_0306912 3300042876 Bacteria 1438
2 JGI25406J46586_10077345 3300003203 Unclassified 1028
3 Ga0065707_10492597 3300005295 Bacteria 764
4 Ga0070682_100613582 3300005337 Bacteria 861
5 Ga0070705_100697793 3300005440 Bacteria 797
6 Ga0070694_100073549 3300005444 Bacteria 2361
7 Ga0070707_100135275 3300005468 Bacteria 2398
8 Ga0070707_100140988 3300005468 Bacteria 2346
9 Ga0070699_100021119 3300005518 Bacteria 5612
10 Ga0070697_100041339 3300005536 Bacteria 3731
11 Ga0070704_100197793 3300005549 Bacteria 1620
12 Ga0068857_100409528 3300005577 Bacteria 1263
13 Ga0068861_100053120 3300005719 Bacteria 3082
14 Ga0068858_101918573 3300005842 Bacteria 585
15 Ga0068860_101319630 3300005843 Unclassified 742
16 Ga0068862_100033081 3300005844 Bacteria 4367
17 Ga0068862_100364527 3300005844 Bacteria 1344
18 Ga0081539_10029453 3300005985 Bacteria 3429
19 Ga0075362_10322164 3300006177 Unclassified 770
20 Ga0075430_100859493 3300006846 Bacteria 747
21 Ga0075429_100101915 3300006880 Bacteria 2506
22 Ga0105240_10026127 3300009093 Bacteria 7663
23 Ga0105247_10113958 3300009101 Bacteria 1743
24 Ga0105247_10918200 3300009101 Unclassified 677
25 Ga0105243_10025853 3300009148 Bacteria 4489
26 Ga0105241_10384455 3300009174 Bacteria 1227
27 Ga0105241_11169881 3300009174 Unclassified 727
28 Ga0105237_10071527 3300009545 Unclassified 3463
29 Ga0105237_10202666 3300009545 Bacteria 1984
30 Ga0105249_10099256 3300009553 Bacteria 2736
31 Ga0105030_100058 3300009987 Bacteria 8015
32 Ga0105239_12012146 3300010375 Bacteria 671
33 Ga0157374_11936601 3300013296 Unclassified 615
34 Ga0157372_10561339 3300013307 Unclassified 1331
35 Ga0157380_11788868 3300014326 Bacteria 673
36 Ga0207654_10631458 3300025911 Bacteria 766
37 Ga0207646_10221935 3300025922 Bacteria 1707
38 Ga0207646_10235450 3300025922 Bacteria 1654
39 Ga0207709_11162240 3300025935 Unclassified 635
40 Ga0207712_10761424 3300025961 Unclassified 849
41 Ga0207668_11207656 3300025972 Bacteria 680
42 Ga0207703_11821184 3300026035 Bacteria 585
43 Ga0207674_10223426 3300026116 Bacteria 1831
44 Ga0207675_100170612 3300026118 Unclassified 2079
45 Ga0268265_10330706 3300028380 Bacteria 1384
46 Ga0265337_1004270 3300028556 Bacteria 5964
47 Ga0265337_1118350 3300028556 Bacteria 719
48 Ga0265334_10014709 3300028573 Bacteria 3258
49 Ga0265318_10014943 3300028577 Bacteria 3245
50 Ga0265322_10008458 3300028654 Bacteria 2997
51 Ga0265338_10035024 3300028800 Bacteria 4837
52 Ga0265338_10389160 3300028800 Bacteria 996
53 Ga0265330_10123801 3300031235 Bacteria 1101
54 Ga0265328_10101119 3300031239 Unclassified 1068
55 Ga0265320_10059786 3300031240 Unclassified 1821
56 Ga0265320_10224638 3300031240 Bacteria 836
57 Ga0265325_10176890 3300031241 Bacteria 996
58 Ga0265339_10025869 3300031249 Bacteria 3364
59 Ga0265339_10337562 3300031249 Bacteria 712
60 Ga0265331_10099373 3300031250 Bacteria 1340
61 Ga0265327_10017685 3300031251 Bacteria 4458
62 Ga0265316_10040061 3300031344 Bacteria 3758
63 Ga0265316_10111860 3300031344 Unclassified 2068
64 Ga0316575_10001329 3300031665 Bacteria 7906
65 Ga0316579_10015025 3300031691 Bacteria 3356
66 Ga0316579_10033953 3300031691 Unclassified 2345
67 Ga0316579_10314156 3300031691 Bacteria 758
68 Ga0265314_10527335 3300031711 Unclassified 618
69 Ga0265342_10117329 3300031712 Unclassified 1502
70 Ga0316576_10074825 3300031727 Unclassified 2505
71 Ga0316576_10868714 3300031727 Bacteria 647
72 Ga0316578_10083260 3300031728 Bacteria 1905
73 Ga0316578_10202786 3300031728 Bacteria 1194
74 Ga0316577_10006416 3300031733 Bacteria 6210
75 Ga0316577_10186990 3300031733 Unclassified 1170
76 Ga0316585_10041133 3300032137 Bacteria 1473
77 Ga0316593_10077175 3300032168 Unclassified 1158
78 Ga0316593_10274142 3300032168 Bacteria 635
79 Ga0373939_0347909 3300035114 Bacteria 603
80 Ga0316574_0007388 3300035398 Bacteria 6024
81 Ga0316582_0002260 3300036647 Bacteria 8974
82 Ga0316582_0007777 3300036647 Bacteria 5728
83 Ga0316582_0044981 3300036647 Bacteria 2778
84 Ga0316582_0442922 3300036647 Unclassified 895
85 Ga0316582_0782704 3300036647 Unclassified 654
86 Ga0316584_0010260 3300036712 Bacteria 6543
87 Ga0316584_0083090 3300036712 Bacteria 2399
88 Ga0395905_0408942 3300037471 Bacteria 1252
89 Ga0316581_0029667 3300037588 Bacteria 1644
90 Ga0316581_0198972 3300037588 Unclassified 617
91 Ga0400489_55936 3300039093 Bacteria 44799
92 Ga0436365_0473377 3300039437 Bacteria 610
93 Ga0436360_0187904 3300039438 Bacteria 1970
94 Ga0436362_0804018 3300039453 Unclassified 1294
95 Ga0451804_0764969 3300041463 Unclassified 701
96 Ga0451807_0347584 3300041486 Bacteria 977
97 Ga0451577_0001152 3300042876 Bacteria 37382
98 Ga0451577_0069332 3300042876 Bacteria 3144
99 Ga0451577_0173236 3300042876 Bacteria 1945
100 Ga0451577_0372029 3300042876 Unclassified 1296
101 Ga0451577_0608697 3300042876 Bacteria 991
102 Ga0451577_0661989 3300042876 Bacteria 947
103 Ga0451577_0808353 3300042876 Bacteria 847
104 Ga0451577_0844552 3300042876 Unclassified 826
105 Ga0451577_0956959 3300042876 Bacteria 770
106 Ga0451577_1148429 3300042876 Bacteria 694
107 Ga0451577_1160284 3300042876 Unclassified 690
108 Ga0453683_0045236 3300044673 Bacteria 2760
109 Ga0453683_0050441 3300044673 Bacteria 2607
110 Ga0453683_0055727 3300044673 Unclassified 2474
111 Ga0453683_0065816 3300044673 Bacteria 2265
112 Ga0453683_0285997 3300044673 Bacteria 1054
113 Ga0453683_0300107 3300044673 Bacteria 1027
114 Ga0453683_0873135 3300044673 Bacteria 594
115 Ga0453684_0000095 3300044712 Bacteria 378681
116 Ga0453684_0000435 3300044712 Bacteria 170233
117 Ga0453684_0000918 3300044712 Bacteria 97926
118 Ga0453684_0002901 3300044712 Bacteria 40182
119 Ga0453684_0004200 3300044712 Bacteria 30978
120 Ga0453684_0005138 3300044712 Bacteria 26326
121 Ga0453684_0007726 3300044712 Bacteria 19644
122 Ga0453684_0015293 3300044712 Bacteria 12163
123 Ga0453684_0026972 3300044712 Bacteria 8269
124 Ga0453684_0059113 3300044712 Bacteria 4946
125 Ga0453684_0075805 3300044712 Bacteria 4225
126 Ga0453684_0095620 3300044712 Bacteria 3651
127 Ga0453684_0106821 3300044712 Bacteria 3410
128 Ga0453684_0128232 3300044712 Bacteria 3049
129 Ga0453684_0138722 3300044712 Bacteria 2907
130 Ga0453684_0143565 3300044712 Bacteria 2846
131 Ga0453684_0159313 3300044712 Bacteria 2671
132 Ga0453684_0176961 3300044712 Bacteria 2508
133 Ga0453684_0251678 3300044712 Bacteria 2028
134 Ga0453684_0362066 3300044712 Bacteria 1633
135 Ga0453684_0372718 3300044712 Bacteria 1604
136 Ga0453684_0411246 3300044712 Bacteria 1513
137 Ga0453684_0447652 3300044712 Bacteria 1438
138 Ga0453684_0545696 3300044712 Bacteria 1278
139 Ga0453684_0805234 3300044712 Bacteria 1013
140 Ga0453684_0828926 3300044712 Bacteria 995
141 Ga0453684_0953013 3300044712 Bacteria 916
142 Ga0453684_1272447 3300044712 Unclassified 769
143 Ga0453684_1372540 3300044712 Bacteria 734
144 Ga0453684_2206085 3300044712 Unclassified 550
145 Ga0451576_0059807 3300045051 Bacteria 3977
146 Ga0451576_0098419 3300045051 Bacteria 3042
147 Ga0451576_0231321 3300045051 Bacteria 1931
148 Ga0451576_0384886 3300045051 Unclassified 1470
149 Ga0451576_0432926 3300045051 Bacteria 1380
150 nmdc:mga09592_133503_c1 3300050508 Bacteria 2137
151 nmdc:mga0qj67_738959_c1 3300050509 Bacteria 781
152 Ga0500556_0263238 3300053104 Bacteria 678
153 Ga0500568_0001145 3300053139 Bacteria 17770
154 Ga0451577_0306912
155 JGI25406J46586_10077345
156 Ga0065707_10492597
157 Ga0070682_100613582
158 Ga0070705_100697793
159 Ga0070694_100073549
160 Ga0070707_100135275
161 Ga0070707_100140988
162 Ga0070699_100021119
163 Ga0070697_100041339
164 Ga0070704_100197793
165 Ga0068857_100409528
166 Ga0068861_100053120
167 Ga0068858_101918573
168 Ga0068860_101319630
169 Ga0068862_100033081
170 Ga0068862_100364527
171 Ga0081539_10029453
172 Ga0075362_10322164
173 Ga0075430_100859493
174 Ga0075429_100101915
175 Ga0105240_10026127
176 Ga0105247_10113958
177 Ga0105247_10918200
178 Ga0105243_10025853
179 Ga0105241_10384455
180 Ga0105241_11169881
181 Ga0105237_10071527
182 Ga0105237_10202666
183 Ga0105249_10099256
184 Ga0105030_100058
185 Ga0105239_12012146
186 Ga0157374_11936601
187 Ga0157372_10561339
188 Ga0157380_11788868
189 Ga0207654_10631458
190 Ga0207646_10221935
191 Ga0207646_10235450
192 Ga0207709_11162240
193 Ga0207712_10761424
194 Ga0207668_11207656
195 Ga0207703_11821184
196 Ga0207674_10223426
197 Ga0207675_100170612
198 Ga0268265_10330706
199 Ga0265337_1004270
200 Ga0265337_1118350
201 Ga0265334_10014709
202 Ga0265318_10014943
203 Ga0265322_10008458
204 Ga0265338_10035024
205 Ga0265338_10389160
206 Ga0265330_10123801
207 Ga0265328_10101119
208 Ga0265320_10059786
209 Ga0265320_10224638
210 Ga0265325_10176890
211 Ga0265339_10025869
212 Ga0265339_10337562
213 Ga0265331_10099373
214 Ga0265327_10017685
215 Ga0265316_10040061
216 Ga0265316_10111860
217 Ga0316575_10001329
218 Ga0316579_10015025
219 Ga0316579_10033953
220 Ga0316579_10314156
221 Ga0265314_10527335
222 Ga0265342_10117329
223 Ga0316576_10074825
224 Ga0316576_10868714
225 Ga0316578_10083260
226 Ga0316578_10202786
227 Ga0316577_10006416
228 Ga0316577_10186990
229 Ga0316585_10041133
230 Ga0316593_10077175
231 Ga0316593_10274142
232 Ga0373939_0347909
233 Ga0316574_0007388
234 Ga0316582_0002260
235 Ga0316582_0007777
236 Ga0316582_0044981
237 Ga0316582_0442922
238 Ga0316582_0782704
239 Ga0316584_0010260
240 Ga0316584_0083090
241 Ga0395905_0408942
242 Ga0316581_0029667
243 Ga0316581_0198972
244 Ga0400489_55936
245 Ga0436365_0473377
246 Ga0436360_0187904
247 Ga0436362_0804018
248 Ga0451804_0764969
249 Ga0451807_0347584
250 Ga0451577_0001152
251 Ga0451577_0069332
252 Ga0451577_0173236
253 Ga0451577_0372029
254 Ga0451577_0608697
255 Ga0451577_0661989
256 Ga0451577_0808353
257 Ga0451577_0844552
258 Ga0451577_0956959
259 Ga0451577_1148429
260 Ga0451577_1160284
261 Ga0453683_0045236
262 Ga0453683_0050441
263 Ga0453683_0055727
264 Ga0453683_0065816
265 Ga0453683_0285997
266 Ga0453683_0300107
267 Ga0453683_0873135
268 Ga0453684_0000095
269 Ga0453684_0000435
270 Ga0453684_0000918
271 Ga0453684_0002901
272 Ga0453684_0004200
273 Ga0453684_0005138
274 Ga0453684_0007726
275 Ga0453684_0015293
276 Ga0453684_0026972
277 Ga0453684_0059113
278 Ga0453684_0075805
279 Ga0453684_0095620
280 Ga0453684_0106821
281 Ga0453684_0128232
282 Ga0453684_0138722
283 Ga0453684_0143565
284 Ga0453684_0159313
285 Ga0453684_0176961
286 Ga0453684_0251678
287 Ga0453684_0362066
288 Ga0453684_0372718
289 Ga0453684_0411246
290 Ga0453684_0447652
291 Ga0453684_0545696
292 Ga0453684_0805234
293 Ga0453684_0828926
294 Ga0453684_0953013
295 Ga0453684_1272447
296 Ga0453684_1372540
297 Ga0453684_2206085
298 Ga0451576_0059807
299 Ga0451576_0098419
300 Ga0451576_0231321
301 Ga0451576_0384886
302 Ga0451576_0432926
303 nmdc:mga09592_133503_c1
304 nmdc:mga0qj67_738959_c1
305 Ga0500556_0263238
306 Ga0500568_0001145

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03449

GreA_GreB_N

Transcription elongation factor, N-terminal

13

83

0.98

PF01272

GreA_GreB

Transcription elongation factor, GreA/GreB, C-term

89

165

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ta8-assembly1.cif.gz_A crystal structure hp-nap from strain ys39 iron loaded (cocrystallization 5mm) 0.9302 12 70
4wqt-assembly3.cif.gz_Z thermus thermophilus rna polymerase complexed with an rna cleavage stimulating factor (a grea/gfh1 chimeric protein) 0.9253 4 151
4tod-assembly1.cif.gz_L 2.05a resolution structure of bfrb (d34f) from pseudomonas aeruginosa 0.9137 12 71
8jax-assembly1.cif.gz_A cryo-em structure of holo form of scbfr with o symmetry 0.913 12 71
5d8q-assembly1.cif.gz_E 2.20a resolution structure of bfrb (l68a) from pseudomonas aeruginosa 0.9121 12 71
ID Description Score Start End Superfamily
af_Q2FXW7_4_78_1.10.287.180 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9895 2 76 1.10.287.180
af_P0A6W5_1_75_1.10.287.180 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.988 4 76 1.10.287.180
af_Q2FXW7_4_78_1.10.287.180 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9766 2 76 1.10.287.180
af_P30128_1_76_1.10.287.180 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9728 3 76 1.10.287.180
1grjA01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9683 3 76 1.10.287.180
ID Description Score Start End GO Terms
AF-A0A259PSD8-F1-model_v4 Transcription elongation factor GreA 0.9924 4 76 GO:0003677
GO:0003746
GO:0006354
GO:0032784
GO:0070063
AF-A0A6B1E263-F1-model_v4 Transcription elongation factor GreA (Transcript cleavage factor GreA) 0.9807 2 155 GO:0003677
GO:0003746
GO:0006354
GO:0032784
GO:0070063
AF-A0A6N7AL41-F1-model_v4 Transcription elongation factor GreA 0.98 3 76 GO:0003677
GO:0003746
GO:0006354
GO:0032784
GO:0070063
AF-A0A0F5R5D9-F1-model_v4 Transcription elongation factor GreA (Transcript cleavage factor GreA) 0.9756 1 155 GO:0003677
GO:0003746
GO:0006354
GO:0032784
GO:0070063
AF-A0A2V7WRT6-F1-model_v4 Transcription elongation factor GreA/GreB N-terminal domain-containing protein 0.9753 4 76 GO:0003677
GO:0006354
GO:0032784
GO:0070063

Map