F217375

General Info

Members Datasets Scaffolds Average Seq Length
153 116 306 126

Family's Representative Sequence

Representative Sequence 3300031548|Ga0307408_100872404|Ga0307408_1008724042
Length 137
Sequence MDLNLWLWIVTVLLATVLLISTAKMFVPRERIAAVGHAAEWVMDFSPGALRAIGVLEILAVAGLILPAVLDIAPILVPVTATCVALLFLGAAIMRLRRGERATIVGDLVYLALAVFVAWGRFGPESFTAATSAAAPW

Samples

Sample ID Description Type Environment
1 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
6 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
7 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
8 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
9 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
10 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
11 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
12 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
13 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
16 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
17 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
18 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
20 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
21 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
22 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
29 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
30 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
31 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
32 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
33 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
34 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
35 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
36 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
37 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
38 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
39 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
40 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
41 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
42 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
43 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
44 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
45 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
46 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
47 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
48 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
49 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
50 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
51 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
52 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
53 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
54 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
55 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
56 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
57 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
58 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
59 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
60 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
61 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
62 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
63 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
64 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
65 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
66 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
67 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
68 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
69 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
70 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
71 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
72 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
73 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
74 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
75 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
76 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
77 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
81 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
82 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
83 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
84 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
85 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
86 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
87 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
88 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
89 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
90 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
91 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
92 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
93 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
94 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
95 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
96 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
97 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
98 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
99 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
100 2857472729 Cohnella sp. R-74144 Isolate Unclassified
101 2858882152 Micromonospora noduli MED15 Isolate Nodule
102 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
103 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
104 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
105 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
106 2902582711 Micromonospora sp. AP08 Isolate Unclassified
107 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
108 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
109 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
110 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
111 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
112 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified
113 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
114 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
115 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule
116 8056060235 Nocardiopsis endophytica RSe5-2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 82.35
Metatranscriptomes 0.65
Isolates 16.99

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.96
Nodule 1.31
Rhizoplane 1.31
Rhizosphere 77.78
Stem 0
Stem Tuber 0
Unclassified 1.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307408_100872404 3300031548 Bacteria 822
2 JGI25407J50210_10001936 3300003373 Bacteria 4808
3 JGI25407J50210_10006224 3300003373 Bacteria 2966
4 Ga0070683_100025728 3300005329 Bacteria 5290
5 Ga0070714_100798351 3300005435 Bacteria 914
6 Ga0070681_10062081 3300005458 Bacteria 3711
7 Ga0070679_100324819 3300005530 Bacteria 1488
8 Ga0070684_100122990 3300005535 Bacteria 2335
9 Ga0070684_100351943 3300005535 Bacteria 1355
10 Ga0070664_100392849 3300005564 Bacteria 1268
11 Ga0068857_100242903 3300005577 Bacteria 1649
12 Ga0068857_101637792 3300005577 Bacteria 629
13 Ga0081455_10740136 3300005937 Bacteria 622
14 Ga0081538_10002049 3300005981 Bacteria 20112
15 Ga0081538_10003125 3300005981 Bacteria 15747
16 Ga0081538_10012770 3300005981 Bacteria 6708
17 Ga0081538_10014818 3300005981 Bacteria 6077
18 Ga0081538_10029748 3300005981 Bacteria 3724
19 Ga0070717_10533261 3300006028 Bacteria 1062
20 Ga0070716_101859605 3300006173 Bacteria 500
21 Ga0075428_100000153 3300006844 Bacteria 62357
22 Ga0075428_100162939 3300006844 Bacteria 2420
23 Ga0075430_101052374 3300006846 Bacteria 670
24 Ga0075431_100613495 3300006847 Bacteria 1071
25 Ga0075429_100130180 3300006880 Bacteria 2201
26 Ga0114129_12399981 3300009147 Bacteria 632
27 Ga0105237_12214747 3300009545 Bacteria 559
28 Ga0157375_10221105 3300013308 Bacteria 2052
29 Ga0224712_10009021 3300022467 Bacteria 2985
30 Ga0207649_11124682 3300025920 Bacteria 620
31 Ga0207652_10591394 3300025921 Bacteria 996
32 Ga0207664_10690151 3300025929 Bacteria 918
33 Ga0207661_10004944 3300025944 Bacteria 9346
34 Ga0207661_10767152 3300025944 Bacteria 888
35 Ga0207679_10405671 3300025945 Bacteria 1200
36 Ga0207674_10257554 3300026116 Bacteria 1692
37 Ga0207674_11388860 3300026116 Bacteria 672
38 Ga0307515_10279775 3300028794 Bacteria 1377
39 Ga0314311_1029779 3300030733 Bacteria 1079
40 Ga0307513_10000201 3300031456 Bacteria 86237
41 Ga0307513_10019045 3300031456 Bacteria 8182
42 Ga0307513_10223782 3300031456 Bacteria 1700
43 Ga0307408_100513802 3300031548 Bacteria 1051
44 Ga0307508_10067747 3300031616 Bacteria 3139
45 Ga0307508_10281906 3300031616 Bacteria 1255
46 Ga0307405_10401183 3300031731 Bacteria 1073
47 Ga0307413_10112131 3300031824 Bacteria 1828
48 Ga0307410_10359463 3300031852 Bacteria 1166
49 Ga0307406_10031108 3300031901 Bacteria 3248
50 Ga0307406_10294127 3300031901 Bacteria 1244
51 Ga0307406_11045098 3300031901 Unclassified 703
52 Ga0307406_11783681 3300031901 Bacteria 547
53 Ga0307407_10158266 3300031903 Bacteria 1479
54 Ga0307409_100518290 3300031995 Bacteria 1164
55 Ga0307409_100607580 3300031995 Bacteria 1081
56 Ga0307409_100870849 3300031995 Bacteria 913
57 Ga0307409_101082140 3300031995 Bacteria 822
58 Ga0307416_100152490 3300032002 Bacteria 2122
59 Ga0307416_103179784 3300032002 Bacteria 549
60 Ga0307416_103470489 3300032002 Bacteria 527
61 Ga0307414_10469868 3300032004 Bacteria 1107
62 Ga0307411_10218570 3300032005 Bacteria 1477
63 Ga0307411_10549344 3300032005 Bacteria 985
64 Ga0307415_100289732 3300032126 Bacteria 1351
65 Ga0307415_101032961 3300032126 Unclassified 766
66 Ga0307415_101592045 3300032126 Bacteria 627
67 Ga0395899_0532001 3300037312 Bacteria 758
68 Ga0395901_0164308 3300038443 Bacteria 2331
69 Ga0451797_1366939 3300041453 Bacteria 758
70 Ga0451853_0049395 3300041512 Bacteria 2759
71 Ga0451853_0469687 3300041512 Bacteria 1709
72 Ga0451853_0656867 3300041512 Bacteria 846
73 Ga0451853_1587216 3300041512 Bacteria 734
74 Ga0451853_1627042 3300041512 Bacteria 771
75 Ga0451853_3615077 3300041512 Bacteria 7278
76 Ga0466964_0437584 3300044706 Bacteria 691
77 Ga0495629_0080336 3300046459 Bacteria 2277
78 Ga0495605_0000954 3300046474 Bacteria 19720
79 Ga0495594_0040757 3300046499 Bacteria 2542
80 Ga0495594_0300449 3300046499 Bacteria 914
81 Ga0495596_0050260 3300046500 Bacteria 1634
82 Ga0495583_0020292 3300046506 Bacteria 3447
83 Ga0495606_0009233 3300046507 Bacteria 8375
84 Ga0495606_0058862 3300046507 Bacteria 2467
85 Ga0495610_0090579 3300046512 Bacteria 1387
86 Ga0495632_0445470 3300046519 Bacteria 562
87 Ga0495666_0005872 3300046526 Bacteria 6184
88 Ga0495640_0617643 3300046533 Bacteria 654
89 Ga0495609_0036339 3300046538 Bacteria 2225
90 Ga0495597_0063858 3300046542 Bacteria 1600
91 Ga0495622_0013196 3300046557 Bacteria 3834
92 Ga0495668_0000265 3300046616 Bacteria 73791
93 Ga0495668_0017116 3300046616 Bacteria 4210
94 Ga0495634_0223572 3300046642 Bacteria 1161
95 Ga0495625_0001104 3300046660 Bacteria 35020
96 Ga0495625_0008038 3300046660 Bacteria 9049
97 Ga0495625_0501535 3300046660 Bacteria 742
98 Ga0495599_0037430 3300046678 Bacteria 3048
99 Ga0495624_0120072 3300046690 Bacteria 1614
100 Ga0495589_0265650 3300046794 Bacteria 799
101 Ga0495660_0016433 3300046810 Bacteria 4267
102 Ga0495636_0180066 3300047318 Bacteria 959
103 Ga0495636_0197680 3300047318 Bacteria 917
104 Ga0495676_0015465 3300047321 Bacteria 6793
105 Ga0495683_0044406 3300047323 Bacteria 2235
106 Ga0495687_236331 3300047443 Bacteria 554
107 Ga0495685_022867 3300047447 Bacteria 2151
108 Ga0495686_0128560 3300047472 Bacteria 1504
109 Ga0495614_0045453 3300048089 Bacteria 1883
110 Ga0495626_0000052 3300048091 Bacteria 156421
111 Ga0495626_0295253 3300048091 Bacteria 641
112 Ga0496112_0351437 3300048915 Bacteria 1416
113 Ga0495678_128797 3300049459 Bacteria 841
114 Ga0501036_1136037 3300049572 Bacteria 638
115 Ga0501038_0404268 3300049574 Bacteria 1056
116 Ga0501048_1377902 3300049582 Bacteria 507
117 Ga0501068_0514192 3300049584 Bacteria 777
118 Ga0501071_1163456 3300049587 Bacteria 596
119 Ga0501076_1120577 3300049592 Bacteria 648
120 Ga0501081_0176733 3300049743 Bacteria 1543
121 Ga0501045_0479678 3300049824 Unclassified 924
122 nmdc:mga07m45_728144_c1 3300050496 Bacteria 570
123 nmdc:mga09592_124728_c1 3300050508 Bacteria 2213
124 nmdc:mga0qj67_930104_c1 3300050509 Bacteria 684
125 nmdc:mga06r32_1614461_c1 3300050510 Bacteria 587
126 Ga0500593_001205 3300053117 Bacteria 9343
127 Ga0500600_0375693 3300053149 Bacteria 574
128 2515855318 2515154155 Bacteria 7985436
129 2738697089 2738541272 Bacteria 6848551
130 2739324261 2738543027 Bacteria 6409078
131 2760621168 2758568621 Bacteria 5967089
132 2785343415 2784746763 Bacteria 9783172
133 2786670633 2786546132 Bacteria 10419719
134 2816420769 2816332119 Bacteria 8120218
135 2837271021 2837268691 Bacteria 7850704
136 2857293259 2857288857 Bacteria 7189066
137 2857474289 2857472729 Bacteria 6568124
138 2858883364 2858882152 Bacteria 7230291
139 2867305111 2867302475 Bacteria 7087181
140 2869064528 2869061728 Bacteria 7112407
141 2869074333 2869068681 Bacteria 7205615
142 2887485180 2887478801 Bacteria 8972725
143 2902584515 2902582711 Bacteria 6187705
144 2954386209 2954380949 Bacteria 10050426
145 2954676955 2954673503 Bacteria 9685905
146 2954687203 2954682443 Bacteria 9862841
147 2954705289 2954701450 Bacteria 10834262
148 2996223478 2996221748 Bacteria 6799777
149 8033685748 8033684223 Bacteria 6906479
150 8048412838 8048406513 Bacteria 8936924
151 8053949393 8053945823 Bacteria 8962862
152 8055418227 8055412473 Bacteria 6257500
153 8056060719 8056060235 Bacteria 7259403
154 Ga0307408_100872404
155 JGI25407J50210_10001936
156 JGI25407J50210_10006224
157 Ga0070683_100025728
158 Ga0070714_100798351
159 Ga0070681_10062081
160 Ga0070679_100324819
161 Ga0070684_100122990
162 Ga0070684_100351943
163 Ga0070664_100392849
164 Ga0068857_100242903
165 Ga0068857_101637792
166 Ga0081455_10740136
167 Ga0081538_10002049
168 Ga0081538_10003125
169 Ga0081538_10012770
170 Ga0081538_10014818
171 Ga0081538_10029748
172 Ga0070717_10533261
173 Ga0070716_101859605
174 Ga0075428_100000153
175 Ga0075428_100162939
176 Ga0075430_101052374
177 Ga0075431_100613495
178 Ga0075429_100130180
179 Ga0114129_12399981
180 Ga0105237_12214747
181 Ga0157375_10221105
182 Ga0224712_10009021
183 Ga0207649_11124682
184 Ga0207652_10591394
185 Ga0207664_10690151
186 Ga0207661_10004944
187 Ga0207661_10767152
188 Ga0207679_10405671
189 Ga0207674_10257554
190 Ga0207674_11388860
191 Ga0307515_10279775
192 Ga0314311_1029779
193 Ga0307513_10000201
194 Ga0307513_10019045
195 Ga0307513_10223782
196 Ga0307408_100513802
197 Ga0307508_10067747
198 Ga0307508_10281906
199 Ga0307405_10401183
200 Ga0307413_10112131
201 Ga0307410_10359463
202 Ga0307406_10031108
203 Ga0307406_10294127
204 Ga0307406_11045098
205 Ga0307406_11783681
206 Ga0307407_10158266
207 Ga0307409_100518290
208 Ga0307409_100607580
209 Ga0307409_100870849
210 Ga0307409_101082140
211 Ga0307416_100152490
212 Ga0307416_103179784
213 Ga0307416_103470489
214 Ga0307414_10469868
215 Ga0307411_10218570
216 Ga0307411_10549344
217 Ga0307415_100289732
218 Ga0307415_101032961
219 Ga0307415_101592045
220 Ga0395899_0532001
221 Ga0395901_0164308
222 Ga0451797_1366939
223 Ga0451853_0049395
224 Ga0451853_0469687
225 Ga0451853_0656867
226 Ga0451853_1587216
227 Ga0451853_1627042
228 Ga0451853_3615077
229 Ga0466964_0437584
230 Ga0495629_0080336
231 Ga0495605_0000954
232 Ga0495594_0040757
233 Ga0495594_0300449
234 Ga0495596_0050260
235 Ga0495583_0020292
236 Ga0495606_0009233
237 Ga0495606_0058862
238 Ga0495610_0090579
239 Ga0495632_0445470
240 Ga0495666_0005872
241 Ga0495640_0617643
242 Ga0495609_0036339
243 Ga0495597_0063858
244 Ga0495622_0013196
245 Ga0495668_0000265
246 Ga0495668_0017116
247 Ga0495634_0223572
248 Ga0495625_0001104
249 Ga0495625_0008038
250 Ga0495625_0501535
251 Ga0495599_0037430
252 Ga0495624_0120072
253 Ga0495589_0265650
254 Ga0495660_0016433
255 Ga0495636_0180066
256 Ga0495636_0197680
257 Ga0495676_0015465
258 Ga0495683_0044406
259 Ga0495687_236331
260 Ga0495685_022867
261 Ga0495686_0128560
262 Ga0495614_0045453
263 Ga0495626_0000052
264 Ga0495626_0295253
265 Ga0496112_0351437
266 Ga0495678_128797
267 Ga0501036_1136037
268 Ga0501038_0404268
269 Ga0501048_1377902
270 Ga0501068_0514192
271 Ga0501071_1163456
272 Ga0501076_1120577
273 Ga0501081_0176733
274 Ga0501045_0479678
275 nmdc:mga07m45_728144_c1
276 nmdc:mga09592_124728_c1
277 nmdc:mga0qj67_930104_c1
278 nmdc:mga06r32_1614461_c1
279 Ga0500593_001205
280 Ga0500600_0375693
281 2515855318
282 2738697089
283 2739324261
284 2760621168
285 2785343415
286 2786670633
287 2816420769
288 2837271021
289 2857293259
290 2857474289
291 2858883364
292 2867305111
293 2869064528
294 2869074333
295 2887485180
296 2902584515
297 2954386209
298 2954676955
299 2954687203
300 2954705289
301 2996223478
302 8033685748
303 8048412838
304 8053949393
305 8055418227
306 8056060719

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13564

DoxX_2

DoxX-like family

9

117

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
6n60-assembly1.cif.gz_F escherichia coli rna polymerase sigma70-holoenzyme bound to upstream fork promoter dna and microcin j25 (mccj25) 0.5251 9 82
5owu-assembly1.cif.gz_A kap95:nup1 complex 0.3991 1 112
2wvw-assembly1.cif.gz_J cryo-em structure of the rbcl-rbcx complex 0.3845 1 89
3hyb-assembly1.cif.gz_B crystal structure of rbcx from anabaena, crystal form ii 0.3845 1 89
3nd2-assembly1.cif.gz_A structure of yeast importin-beta (kap95p) 0.3824 1 109
ID Description Score Start End Superfamily
af_Q8I0W6_322_470_1.10.357.140 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;UbiA prenyltransferase 0.7112 7 64 1.10.357.140
5hxrA01 Special;Helix non-globular;Methane Monooxygenase Hydroxylase; Chain G, domain 1;NCX, peripheral helical region 0.626 3 74 6.10.280.80
5hxhB01 Special;Helix non-globular;Methane Monooxygenase Hydroxylase; Chain G, domain 1;NCX, peripheral helical region 0.6183 7 74 6.10.280.80
5hxhA01 Special;Helix non-globular;Methane Monooxygenase Hydroxylase; Chain G, domain 1;NCX, peripheral helical region 0.6106 3 74 6.10.280.80
5jdhA01 Special;Helix non-globular;Methane Monooxygenase Hydroxylase; Chain G, domain 1;NCX, peripheral helical region 0.599 4 74 6.10.280.80
ID Description Score Start End GO Terms
AF-A0A535QI26-F1-model_v4 DoxX family protein 0.8517 1 71 GO:0016020
AF-A0A535QI26-F1-model_v4 DoxX family protein 0.8299 1 71 GO:0016020
AF-A0A816LQP9-F1-model_v4 Uncharacterized protein 0.75 1 71 GO:0016020
AF-A0A2S9G1A6-F1-model_v4 DoxX family protein 0.7421 12 89 GO:0016020
AF-L0ITF8-F1-model_v4 DoxX protein 0.7123 1 90 GO:0016020

Map