F215407

General Info

Members Datasets Scaffolds Average Seq Length
152 117 128 389

Family's Representative Sequence

Representative Sequence 3300048928|Ga0496125_0004973|Ga0496125_0004973_7114_8370
Length 418
Sequence VSEFPARAVVDLGAVRANARTLGDLAPSAQVMAVVKADAYGHGLLPVARAAVEGGATWLGVAQLSEALALRAGGLTARVLTWLYAPGAPLAAAVAADIDLSVSAPWAVDEVADAARATGRTARVHLKVDTGLGRNGLAPDQLPGVLDAALRLEAEGVLAVVGIWSHLAFADEPGHPTLHRQAELLRSLVADAEARGARFEVRHIAASASTLTDPELHLDLVRPGLALYGLTPVPQLGGPERFGLVPAMTVEAELATVKRLPAGHGISYGHHYVTPRETTVGIVPLGYGDGVPRHASGVDGAPGAPLGLGGRRLAIAGRVCMDQVVVDLGPDAREVAGDRVVLFGTGADGGPTAQDWADAAGTISYEIVTRLGARVPRVYVGGRDDVDARTRGAGTQVDETQAGDAQVDDARRVAEGVA

Samples

Sample ID Description Type Environment
1 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
2 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
3 2643221679 Angustibacter sp. Root456 Isolate Unclassified
4 2643221711 Terrabacter sp. Root85 Isolate Unclassified
5 2690315857 Rheinheimera sp. EpRS3 Isolate Unclassified
6 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
7 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
8 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
9 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
10 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
11 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
12 2808606394 Promicromonospora sp. C35 Isolate Unclassified
13 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
14 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
15 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
16 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
17 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
18 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
19 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
20 2932398195 Dietzia sp. 2505 Isolate Rhizosphere
21 3001889506 Janibacter sp. YIM B02568 Isolate Unclassified
22 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
23 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
24 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
25 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
26 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
27 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
28 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
29 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
30 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
31 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
34 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
35 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
36 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
37 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
40 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
41 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
42 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
51 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
52 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
53 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
54 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
55 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
56 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
57 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
58 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
59 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
60 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
61 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
62 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
63 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
64 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
65 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
66 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
67 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
68 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
69 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
70 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
71 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
72 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
73 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
74 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
75 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
76 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
77 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
78 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
79 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
80 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
81 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
82 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
83 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
84 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
99 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
100 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
101 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
102 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
103 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
104 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
105 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
106 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
107 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
108 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
109 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
110 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
111 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
113 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
114 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
115 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
116 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
117 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.21
Metatranscriptomes 0
Isolates 15.79

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.61
Nodule 0
Rhizoplane 15.13
Rhizosphere 66.45
Stem 0
Stem Tuber 0
Unclassified 13.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055539_1000008 3300003752 Bacteria 537665
2 Ga0055533_1000001 3300003756 Bacteria 1863437
3 Ga0055525_1000540 3300003759 Bacteria 17989
4 Ga0070683_100160786 3300005329 Bacteria 2131
5 Ga0070705_100014493 3300005440 Bacteria 4057
6 Ga0070696_100004032 3300005546 Bacteria 9791
7 Ga0070696_100262812 3300005546 Bacteria 1309
8 Ga0068857_100075077 3300005577 Bacteria 3014
9 Ga0070702_100001665 3300005615 Bacteria 9226
10 Ga0068852_100047012 3300005616 Bacteria 3680
11 Ga0081540_1062312 3300005983 Bacteria 1772
12 Ga0068865_100161173 3300006881 Bacteria 1711
13 Ga0105243_10078777 3300009148 Bacteria 2684
14 Ga0105243_10162545 3300009148 Bacteria 1927
15 Ga0105242_10016602 3300009176 Bacteria 5726
16 Ga0105249_10039640 3300009553 Bacteria 4277
17 Ga0157371_10012729 3300013102 Bacteria 6413
18 Ga0157370_10008278 3300013104 Bacteria 11225
19 Ga0157378_10019238 3300013297 Bacteria 6001
20 Ga0157375_10487466 3300013308 Bacteria 1397
21 Ga0157380_10050528 3300014326 Bacteria 3285
22 Ga0163161_10014308 3300017792 Bacteria 5523
23 Ga0209566_100149 3300025225 Bacteria 81626
24 Ga0209674_100001 3300025226 Bacteria 4013750
25 Ga0209563_100001 3300025230 Bacteria 4013775
26 Ga0209677_100001 3300025253 Bacteria 4013787
27 Ga0207661_10201801 3300025944 Bacteria 1749
28 Ga0207661_10204399 3300025944 Bacteria 1738
29 Ga0207712_10080484 3300025961 Bacteria 2370
30 Ga0207674_10012128 3300026116 Bacteria 9651
31 Ga0207683_10035940 3300026121 Bacteria 4310
32 Ga0265334_10002097 3300028573 Bacteria 9418
33 Ga0316176_1091872 3300030732 Bacteria 2025
34 Ga0316182_1430929 3300030745 Bacteria 1446
35 Ga0307410_10128824 3300031852 Bacteria 1856
36 Ga0307407_10021962 3300031903 Bacteria 3302
37 Ga0307409_100001722 3300031995 Bacteria 11030
38 Ga0307416_100069407 3300032002 Bacteria 2916
39 Ga0395900_0001170 3300037418 Bacteria 32733
40 Ga0395900_0063614 3300037418 Bacteria 3793
41 Ga0395900_0149047 3300037418 Bacteria 2391
42 Ga0395898_0053835 3300037466 Bacteria 3929
43 Ga0395905_0293303 3300037471 Bacteria 1513
44 Ga0395901_0044164 3300038443 Bacteria 4622
45 Ga0395901_0123386 3300038443 Bacteria 2722
46 Ga0395901_0144655 3300038443 Bacteria 2499
47 Ga0395901_0147099 3300038443 Bacteria 2476
48 Ga0466965_0000038 3300044683 Bacteria 47424
49 Ga0466965_0062379 3300044683 Bacteria 1864
50 Ga0466966_0074781 3300044684 Bacteria 2117
51 Ga0453684_0003334 3300044712 Bacteria 36440
52 Ga0466960_0005412 3300044901 Bacteria 5057
53 Ga0466960_0039334 3300044901 Bacteria 2230
54 Ga0466960_0093387 3300044901 Bacteria 1537
55 Ga0466959_0066853 3300045049 Bacteria 2607
56 Ga0466967_0075486 3300045976 Bacteria 3030
57 Ga0466967_0337234 3300045976 Bacteria 1457
58 Ga0495658_0114398 3300046683 Bacteria 1626
59 Ga0496100_0035979 3300048903 Bacteria 3119
60 Ga0496100_0101529 3300048903 Bacteria 1983
61 Ga0496101_0025123 3300048904 Bacteria 4129
62 Ga0496102_0011463 3300048905 Bacteria 7643
63 Ga0496103_0129191 3300048906 Bacteria 1613
64 Ga0496103_0204475 3300048906 Bacteria 1270
65 Ga0496104_0009313 3300048907 Bacteria 8733
66 Ga0496104_0032676 3300048907 Bacteria 4844
67 Ga0496105_0015109 3300048908 Bacteria 6144
68 Ga0496105_0046838 3300048908 Bacteria 3569
69 Ga0496106_0042544 3300048909 Bacteria 3407
70 Ga0496106_0133415 3300048909 Bacteria 1949
71 Ga0496107_0011942 3300048910 Bacteria 6064
72 Ga0496108_0102444 3300048911 Bacteria 2443
73 Ga0496113_0010762 3300048916 Bacteria 6066
74 Ga0496113_0147875 3300048916 Bacteria 1852
75 Ga0496114_0003935 3300048917 Bacteria 11457
76 Ga0496114_0019460 3300048917 Bacteria 5500
77 Ga0496114_0032803 3300048917 Bacteria 4277
78 Ga0496114_0137093 3300048917 Bacteria 2116
79 Ga0496114_0190780 3300048917 Bacteria 1793
80 Ga0496114_0265210 3300048917 Bacteria 1513
81 Ga0496115_0072157 3300048918 Bacteria 2801
82 Ga0496122_0004014 3300048925 Bacteria 18739
83 Ga0496123_0001017 3300048926 Bacteria 42804
84 Ga0496124_0001625 3300048927 Bacteria 32229
85 Ga0496125_0000224 3300048928 Bacteria 115811
86 Ga0496125_0004973 3300048928 Bacteria 15032
87 Ga0501032_0015112 3300049569 Bacteria 5452
88 Ga0501033_0043646 3300049570 Bacteria 3339
89 Ga0501034_0021270 3300049571 Bacteria 6615
90 Ga0501034_0026444 3300049571 Bacteria 5909
91 Ga0501036_0000815 3300049572 Bacteria 23161
92 Ga0501036_0191847 3300049572 Bacteria 1719
93 Ga0501037_0016457 3300049573 Bacteria 5443
94 Ga0501038_0002459 3300049574 Bacteria 17250
95 Ga0501038_0006024 3300049574 Bacteria 11220
96 Ga0501039_0015630 3300049575 Bacteria 5808
97 Ga0501040_0002089 3300049576 Bacteria 12866
98 Ga0501041_0019767 3300049577 Bacteria 4023
99 Ga0501042_0003529 3300049578 Bacteria 9833
100 Ga0501043_0060331 3300049579 Bacteria 2977
101 Ga0501046_0004455 3300049580 Bacteria 12707
102 Ga0501046_0091449 3300049580 Bacteria 2340
103 Ga0501046_0173152 3300049580 Bacteria 1618
104 Ga0501047_0041469 3300049581 Bacteria 4447
105 Ga0501047_0097727 3300049581 Bacteria 2814
106 Ga0501048_0010465 3300049582 Bacteria 6926
107 Ga0501067_0119021 3300049583 Bacteria 1469
108 Ga0501069_0029509 3300049585 Bacteria 3010
109 Ga0501070_0000783 3300049586 Bacteria 28855
110 Ga0501071_0000839 3300049587 Bacteria 16470
111 Ga0501072_0003953 3300049588 Bacteria 11214
112 Ga0501073_0052155 3300049589 Bacteria 2864
113 Ga0501074_0029263 3300049590 Bacteria 3990
114 Ga0501076_0010589 3300049592 Bacteria 6847
115 Ga0501077_0002118 3300049593 Bacteria 11979
116 Ga0501079_0005556 3300049741 Bacteria 9404
117 Ga0501080_0008859 3300049742 Bacteria 9148
118 Ga0501080_0032609 3300049742 Bacteria 4859
119 Ga0501081_0012618 3300049743 Bacteria 5555
120 Ga0501083_0000795 3300049744 Bacteria 20733
121 Ga0501083_0007243 3300049744 Bacteria 7879
122 Ga0501044_0123609 3300049823 Bacteria 2586
123 Ga0501045_0002174 3300049824 Bacteria 13288
124 Ga0501045_0030394 3300049824 Bacteria 3910
125 Ga0501045_0065128 3300049824 Bacteria 2676
126 Ga0501084_0008585 3300054114 Bacteria 8448
127 Ga0501084_0064324 3300054114 Bacteria 3070
128 Ga0530510_0027133 3300061734 Bacteria 4102

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049572 Ga0501036_0191847 Ga0501036_0191847_579_1664 300
2 3300048906 Ga0496103_0129191 Ga0496103_0129191_28_1074 314
3 3300044683 Ga0466965_0000038 Ga0466965_0000038_20209_21306 324
4 3300045976 Ga0466967_0075486 Ga0466967_0075486_225_1475 326
5 3300037418 Ga0395900_0001170 Ga0395900_0001170_9980_11056 328
6 3300045049 Ga0466959_0066853 Ga0466959_0066853_454_1776 328
7 iso_pu_bacteria 2690315857 2691329549 328
8 iso_pu_bacteria 2919534386 2919536247 328
9 3300048917 Ga0496114_0265210 Ga0496114_0265210_248_1411 335
10 iso_pu_bacteria 2818991318 2819424681 336
11 3300005440 Ga0070705_100014493 Ga0070705_1000144934 337
12 3300044683 Ga0466965_0062379 Ga0466965_0062379_409_1485 337
13 3300044901 Ga0466960_0039334 Ga0466960_0039334_301_1377 337
14 3300009176 Ga0105242_10016602 Ga0105242_100166025 338
15 3300013308 Ga0157375_10487466 Ga0157375_104874662 338
16 3300014326 Ga0157380_10050528 Ga0157380_100505282 338
17 iso_pu_bacteria 8001781756 8001782698 338
18 3300048907 Ga0496104_0032676 Ga0496104_0032676_622_1743 340
19 3300048916 Ga0496113_0147875 Ga0496113_0147875_10_1188 340
20 3300048917 Ga0496114_0032803 Ga0496114_0032803_2605_3777 340
21 3300044901 Ga0466960_0093387 Ga0466960_0093387_146_1426 341
22 3300049571 Ga0501034_0026444 Ga0501034_0026444_3804_4904 343
23 3300049579 Ga0501043_0060331 Ga0501043_0060331_1334_2434 343
24 3300049580 Ga0501046_0173152 Ga0501046_0173152_415_1515 343
25 3300049581 Ga0501047_0097727 Ga0501047_0097727_705_1805 343
26 3300049586 Ga0501070_0000783 Ga0501070_0000783_3764_4864 343
27 3300049589 Ga0501073_0052155 Ga0501073_0052155_1624_2724 343
28 3300049742 Ga0501080_0008859 Ga0501080_0008859_7623_8723 343
29 3300049744 Ga0501083_0007243 Ga0501083_0007243_2927_4027 343
30 3300048906 Ga0496103_0204475 Ga0496103_0204475_55_1185 344
31 3300044712 Ga0453684_0003334 Ga0453684_0003334_15773_16918 345
32 3300048925 Ga0496122_0004014 Ga0496122_0004014_10888_12054 345
33 3300048926 Ga0496123_0001017 Ga0496123_0001017_6699_7865 345
34 3300048927 Ga0496124_0001625 Ga0496124_0001625_29268_30434 345
35 3300048928 Ga0496125_0000224 Ga0496125_0000224_90309_91529 346
36 iso_pu_bacteria 2738541272 2738693748 346
37 iso_pu_bacteria 2738543027 2739328130 346
38 iso_pu_bacteria 2739367654 2739607421 346
39 iso_pu_bacteria 2758568522 2760304674 346
40 iso_pu_bacteria 2758568621 2760621513 346
41 iso_pu_bacteria 2808606394 2809026300 346
42 iso_pu_bacteria 2932398195 2932398250 346
43 iso_pu_bacteria 8056579771 8056583229 346
44 3300009148 Ga0105243_10162545 Ga0105243_101625452 347
45 3300013102 Ga0157371_10012729 Ga0157371_100127295 347
46 3300013104 Ga0157370_10008278 Ga0157370_1000827813 347
47 3300038443 Ga0395901_0144655 Ga0395901_0144655_422_1579 347
48 3300038443 Ga0395901_0147099 Ga0395901_0147099_348_1505 347
49 3300044684 Ga0466966_0074781 Ga0466966_0074781_147_1304 347
50 3300048928 Ga0496125_0004973 Ga0496125_0004973_7114_8370 347
51 3300049571 Ga0501034_0021270 Ga0501034_0021270_710_1918 347
52 3300049573 Ga0501037_0016457 Ga0501037_0016457_3513_4721 347
53 3300049574 Ga0501038_0002459 Ga0501038_0002459_3906_5114 347
54 3300049580 Ga0501046_0091449 Ga0501046_0091449_358_1566 347
55 3300049581 Ga0501047_0041469 Ga0501047_0041469_203_1411 347
56 3300049583 Ga0501067_0119021 Ga0501067_0119021_158_1366 347
57 3300049744 Ga0501083_0000795 Ga0501083_0000795_13894_15102 347
58 3300049823 Ga0501044_0123609 Ga0501044_0123609_592_1800 347
59 3300054114 Ga0501084_0064324 Ga0501084_0064324_1512_2720 347
60 iso_pu_bacteria 2643221711 2644610790 347
61 iso_pu_bacteria 2811994882 2812375782 347
62 iso_pu_bacteria 2818991458 2819667020 347
63 iso_pu_bacteria 2818991462 2819690374 347
64 iso_pu_bacteria 2818991469 2819728366 347
65 iso_pu_bacteria 2643221679 2644445509 348
66 3300005329 Ga0070683_100160786 Ga0070683_1001607861 349
67 3300005546 Ga0070696_100262812 Ga0070696_1002628121 349
68 3300017792 Ga0163161_10014308 Ga0163161_100143084 349
69 3300025944 Ga0207661_10204399 Ga0207661_102043991 349
70 3300044901 Ga0466960_0005412 Ga0466960_0005412_1492_2676 349
71 iso_pu_bacteria 2808606365 2808875474 349
72 iso_pu_bacteria 2919446982 2919447898 349
73 iso_pu_bacteria 3001889506 3001892171 349
74 3300005615 Ga0070702_100001665 Ga0070702_1000016657 350
75 3300005616 Ga0068852_100047012 Ga0068852_1000470122 350
76 3300006881 Ga0068865_100161173 Ga0068865_1001611732 350
77 3300009148 Ga0105243_10078777 Ga0105243_100787771 350
78 3300009553 Ga0105249_10039640 Ga0105249_100396402 350
79 3300013297 Ga0157378_10019238 Ga0157378_100192384 350
80 3300025961 Ga0207712_10080484 Ga0207712_100804841 350
81 3300026121 Ga0207683_10035940 Ga0207683_100359404 350
82 3300028573 Ga0265334_10002097 Ga0265334_100020974 350
83 3300030732 Ga0316176_1091872 Ga0316176_10918722 350
84 3300030745 Ga0316182_1430929 Ga0316182_14309291 350
85 3300005546 Ga0070696_100004032 Ga0070696_1000040322 351
86 3300037418 Ga0395900_0063614 Ga0395900_0063614_1431_2720 351
87 3300037466 Ga0395898_0053835 Ga0395898_0053835_755_2044 351
88 3300037471 Ga0395905_0293303 Ga0395905_0293303_135_1442 351
89 3300048903 Ga0496100_0035979 Ga0496100_0035979_115_1329 351
90 3300048903 Ga0496100_0101529 Ga0496100_0101529_686_1897 351
91 3300048904 Ga0496101_0025123 Ga0496101_0025123_1748_2962 351
92 3300048905 Ga0496102_0011463 Ga0496102_0011463_5053_6267 351
93 3300048907 Ga0496104_0009313 Ga0496104_0009313_3002_4216 351
94 3300048908 Ga0496105_0015109 Ga0496105_0015109_4045_5259 351
95 3300048908 Ga0496105_0046838 Ga0496105_0046838_1070_2281 351
96 3300048909 Ga0496106_0133415 Ga0496106_0133415_526_1740 351
97 3300048910 Ga0496107_0011942 Ga0496107_0011942_4309_5523 351
98 3300048911 Ga0496108_0102444 Ga0496108_0102444_114_1325 351
99 3300048916 Ga0496113_0010762 Ga0496113_0010762_679_1908 351
100 3300048917 Ga0496114_0019460 Ga0496114_0019460_2668_3882 351
101 3300048917 Ga0496114_0137093 Ga0496114_0137093_619_1830 351
102 3300048917 Ga0496114_0190780 Ga0496114_0190780_445_1647 351
103 iso_pu_bacteria 8004021418 8004021586 351
104 3300005577 Ga0068857_100075077 Ga0068857_1000750773 352
105 3300025944 Ga0207661_10201801 Ga0207661_102018012 352
106 3300026116 Ga0207674_10012128 Ga0207674_100121288 352
107 3300031852 Ga0307410_10128824 Ga0307410_101288242 352
108 3300031903 Ga0307407_10021962 Ga0307407_100219623 352
109 3300031995 Ga0307409_100001722 Ga0307409_1000017222 352
110 3300032002 Ga0307416_100069407 Ga0307416_1000694073 352
111 3300037418 Ga0395900_0149047 Ga0395900_0149047_1090_2268 352
112 3300038443 Ga0395901_0044164 Ga0395901_0044164_2327_3505 352
113 3300038443 Ga0395901_0123386 Ga0395901_0123386_753_1952 352
114 3300046683 Ga0495658_0114398 Ga0495658_0114398_321_1517 352
115 3300048909 Ga0496106_0042544 Ga0496106_0042544_1796_2971 352
116 3300048917 Ga0496114_0003935 Ga0496114_0003935_1650_2828 352
117 3300048918 Ga0496115_0072157 Ga0496115_0072157_138_1325 352
118 3300049569 Ga0501032_0015112 Ga0501032_0015112_301_1482 352
119 3300049570 Ga0501033_0043646 Ga0501033_0043646_990_2171 352
120 3300049572 Ga0501036_0000815 Ga0501036_0000815_7342_8523 352
121 3300049574 Ga0501038_0006024 Ga0501038_0006024_3702_4883 352
122 3300049575 Ga0501039_0015630 Ga0501039_0015630_408_1589 352
123 3300049576 Ga0501040_0002089 Ga0501040_0002089_7473_8654 352
124 3300049577 Ga0501041_0019767 Ga0501041_0019767_1281_2462 352
125 3300049578 Ga0501042_0003529 Ga0501042_0003529_3585_4766 352
126 3300049580 Ga0501046_0004455 Ga0501046_0004455_9287_10468 352
127 3300049582 Ga0501048_0010465 Ga0501048_0010465_4357_5538 352
128 3300049585 Ga0501069_0029509 Ga0501069_0029509_696_1877 352
129 3300049587 Ga0501071_0000839 Ga0501071_0000839_4891_6072 352
130 3300049588 Ga0501072_0003953 Ga0501072_0003953_7243_8424 352
131 3300049590 Ga0501074_0029263 Ga0501074_0029263_1169_2350 352
132 3300049592 Ga0501076_0010589 Ga0501076_0010589_3603_4784 352
133 3300049593 Ga0501077_0002118 Ga0501077_0002118_10362_11543 352
134 3300049741 Ga0501079_0005556 Ga0501079_0005556_5513_6694 352
135 3300049742 Ga0501080_0032609 Ga0501080_0032609_1566_2747 352
136 3300049743 Ga0501081_0012618 Ga0501081_0012618_3591_4772 352
137 3300049824 Ga0501045_0002174 Ga0501045_0002174_11207_12388 352
138 3300049824 Ga0501045_0030394 Ga0501045_0030394_2010_3191 352
139 3300049824 Ga0501045_0065128 Ga0501045_0065128_420_1601 352
140 3300054114 Ga0501084_0008585 Ga0501084_0008585_2847_4028 352
141 3300061734 Ga0530510_0027133 Ga0530510_0027133_780_1961 352
142 iso_pu_bacteria 2643221567 2643852629 352
143 iso_pu_bacteria 2643221624 2644135137 352
144 3300003752 Ga0055539_1000008 Ga0055539_100000863 353
145 3300003756 Ga0055533_1000001 Ga0055533_10000011007 353
146 3300003759 Ga0055525_1000540 Ga0055525_100054014 353
147 3300005983 Ga0081540_1062312 Ga0081540_10623122 353
148 3300025225 Ga0209566_100149 Ga0209566_10014956 353
149 3300025226 Ga0209674_100001 Ga0209674_1000011007 353
150 3300025230 Ga0209563_100001 Ga0209563_1000011007 353
151 3300025253 Ga0209677_100001 Ga0209677_1000011007 353
152 3300045976 Ga0466967_0337234 Ga0466967_0337234_201_1427 353

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01168

Ala_racemase_N

Alanine racemase, N-terminal domain

10

232

0.96

PF00842

Ala_racemase_C

Alanine racemase, C-terminal domain

247

379

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vfh-assembly1.cif.gz_A crystal structure of alanine racemase from d-cycloserine producing streptomyces lavendulae 0.9394 9 353
5faj-assembly1.cif.gz_A alanine racemase from streptomyces coelicolor a3(2) in complex with d-cycloserine 0.9378 5 353
1xfc-assembly1.cif.gz_A the 1.9 a crystal structure of alanine racemase from mycobacterium tuberculosis contains a conserved entryway into the active site 0.9253 11 351
5faj-assembly1.cif.gz_A alanine racemase from streptomyces coelicolor a3(2) in complex with d-cycloserine 0.925 5 353
8b8h-assembly1.cif.gz_B structure of dcs-resistant variant d322n of alanine racemase from m. tuberculosis in complex with dcs 0.9212 11 352
ID Description Score Start End Superfamily
1xfcA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9228 19 223 3.20.20.10
4a3qB01 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9202 243 353 2.40.37.10
1xfcA01 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9177 243 351 2.40.37.10
6q71A01 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9128 243 353 2.40.37.10
3kw3A01 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9093 242 352 2.40.37.10
ID Description Score Start End GO Terms
AF-A0A399PI87-F1-model_v4 tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE 0.9583 184 350 GO:0002949
GO:0005829
GO:0008784
GO:0009252
GO:0016740
GO:0030170
GO:0030632
AF-A0A399P7V9-F1-model_v4 Alanine racemase 0.9538 13 153 GO:0005829
GO:0008784
GO:0009252
GO:0030170
GO:0030632
AF-A0A4Y3KS72-F1-model_v4 Alanine racemase (EC 5.1.1.1) 0.9507 9 353 GO:0005829
GO:0008784
GO:0009252
GO:0030170
GO:0030632
AF-A0A399NEW4-F1-model_v4 Alanine racemase 0.9504 13 176 GO:0005829
GO:0008784
GO:0009252
GO:0030170
GO:0030632
AF-A0A0Q7TNY5-F1-model_v4 Alanine racemase (EC 5.1.1.1) 0.9488 11 352 GO:0005829
GO:0008784
GO:0009252
GO:0030170
GO:0030632

Feature Viewer

pLDDT pTM Quality
91.97 0.9 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map