F213724

General Info

Members Datasets Scaffolds Average Seq Length
152 90 304 747

Family's Representative Sequence

Representative Sequence 3300005471|Ga0070698_100024617|Ga0070698_1000246174
Length 833
Sequence MVGAGSPRGNVSRHSLKTSGHTATGVFNTKHPSLKTIVKTTRLPENESTTPARPRDGFKLFLISFLILFLELAAIRWFPAHVLYLTFFTNVVLLASFLGMSVGCLAASHRRNYLSWTPLLLVVALAAAHAVEISSGSFMKFVDVGNQASPQQVYFGTEYHSQDLSRYAIPVEILCGFFFMVIALAFVGPGQELGRGLQRWPSRVQAYTLNIVGSILGIALFAVSSWLEIPAYCWFLLVAVGLGYFYFVSPDDRFPRRLLGWGSLTAILLLLVVWLAAFSPVHDQYPGQRTAQQIWSPYYRIDFKQADLSLSVNLIYHQQMVSRNENFPAYALPHLLNRDAGRPPFEDVLIIGAGSGNDVSRALQWGAKQVDAVEIDPAINRLGRAYHPDRPYQDARVRIQLDDGRNFLRSTERKYDLIIYALVDSLVLHSGYSNIRLESFLFTRQTFEDVRRHLKPNGTFVIYNYFRQGWLAARLQKGLDEVFGESNSLVLTLPYRKVIEPDKATFGDFTIFFAGATGQLRDAFARQPIYWLRDDEPPGPTSPSGFQPDPATIQTTVFPTTKGEPAAESHWQHFGLANVLQPEGGIRTATDDWPFLYLRQPMIPTLSWRGMLIMGGLGLLLIFLFLPRMKKGWSAGVDRGAITTRLPSTLNVQLFFLGAGFMLVETKAVVTMALLFGSTWVVNSVVFLAVLLMILVANLWTLRHKPAKLWPYYAGLLITLALNAIVPLDFFLGMSRSLQVLGSCLLVFAPILFAGVIFAASFKRTNEPDRAFGVNIAGALLGGLAEYSSMLLGFQYLVLVAILFYALSAIGLRRSPDAAVIDETSSEPVGVEV

Samples

Sample ID Description Type Environment
1 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
18 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
28 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
29 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
30 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
32 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
33 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
44 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
45 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
50 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
66 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
68 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
69 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
70 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
71 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
72 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
73 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
74 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
75 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
76 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
77 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
78 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
79 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
81 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
82 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
83 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
84 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
85 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
86 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
87 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
88 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
89 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
90 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.95
Nodule 0
Rhizoplane 0.66
Rhizosphere 92.11
Stem 0
Stem Tuber 0
Unclassified 9.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070698_100024617 3300005471 Bacteria 6280
2 Ga0065707_10089745 3300005295 Bacteria 4291
3 Ga0065707_10095674 3300005295 Bacteria 3351
4 Ga0070690_100003932 3300005330 Bacteria 8200
5 Ga0068869_100010886 3300005334 Bacteria 5950
6 Ga0070666_10027784 3300005335 Bacteria 3708
7 Ga0070680_100001417 3300005336 Bacteria 17337
8 Ga0070680_100050817 3300005336 Unclassified 3382
9 Ga0070689_100003400 3300005340 Bacteria 10580
10 Ga0070669_100015676 3300005353 Bacteria 5404
11 Ga0070708_100003029 3300005445 Bacteria 13048
12 Ga0070708_100041687 3300005445 Bacteria 4025
13 Ga0070681_10000032 3300005458 Bacteria 99533
14 Ga0070681_10008208 3300005458 Bacteria 10217
15 Ga0068867_100024248 3300005459 Unclassified 4347
16 Ga0070706_100000075 3300005467 Bacteria 114725
17 Ga0070706_100014157 3300005467 Bacteria 7370
18 Ga0070706_100030110 3300005467 Unclassified 4999
19 Ga0070706_100094667 3300005467 Bacteria 2771
20 Ga0070707_100000087 3300005468 Bacteria 82786
21 Ga0070707_100007792 3300005468 Bacteria 9946
22 Ga0070707_100014897 3300005468 Bacteria 7293
23 Ga0070707_100034229 3300005468 Bacteria 4845
24 Ga0070698_100011804 3300005471 Bacteria 9269
25 Ga0070698_100021205 3300005471 Bacteria 6808
26 Ga0070698_100027488 3300005471 Bacteria 5915
27 Ga0070698_100058109 3300005471 Unclassified 3911
28 Ga0070698_100062960 3300005471 Bacteria 3741
29 Ga0070698_100086045 3300005471 Bacteria 3130
30 Ga0070699_100001588 3300005518 Bacteria 20748
31 Ga0070699_100036941 3300005518 Bacteria 4226
32 Ga0070679_100000331 3300005530 Bacteria 40170
33 Ga0070697_100001552 3300005536 Bacteria 17479
34 Ga0070697_100002986 3300005536 Bacteria 12994
35 Ga0070697_100082522 3300005536 Bacteria 2650
36 Ga0070686_100013077 3300005544 Bacteria 4739
37 Ga0070693_100023784 3300005547 Bacteria 3279
38 Ga0070665_100050172 3300005548 Bacteria 4188
39 Ga0070704_100002653 3300005549 Bacteria 10101
40 Ga0068857_100014783 3300005577 Bacteria 6810
41 Ga0070702_100010623 3300005615 Bacteria 4545
42 Ga0068864_100005273 3300005618 Bacteria 10592
43 Ga0068858_100024808 3300005842 Bacteria 5583
44 Ga0068858_100104397 3300005842 Bacteria 2644
45 Ga0068860_100000161 3300005843 Bacteria 110123
46 Ga0068860_100022005 3300005843 Bacteria 6171
47 Ga0068862_100057911 3300005844 Bacteria 3324
48 Ga0081539_10000742 3300005985 Bacteria 65120
49 Ga0081539_10005163 3300005985 Bacteria 13585
50 Ga0081539_10037761 3300005985 Unclassified 2871
51 Ga0075362_10000198 3300006177 Bacteria 16719
52 Ga0075367_10006950 3300006178 Bacteria 5762
53 Ga0097621_100015332 3300006237 Bacteria 5764
54 Ga0097621_100030621 3300006237 Bacteria 4261
55 Ga0075428_100030491 3300006844 Bacteria 5964
56 Ga0075428_100126487 3300006844 Bacteria 2781
57 Ga0075433_10010423 3300006852 Bacteria 7459
58 Ga0075433_10014395 3300006852 Bacteria 6461
59 Ga0075433_10114893 3300006852 Unclassified 2388
60 Ga0075429_100035848 3300006880 Bacteria 4314
61 Ga0105240_10035205 3300009093 Bacteria 6454
62 Ga0111539_10009079 3300009094 Bacteria 12586
63 Ga0111539_10032413 3300009094 Bacteria 6344
64 Ga0111539_10163752 3300009094 Bacteria 2601
65 Ga0111539_10193799 3300009094 Unclassified 2371
66 Ga0105247_10022218 3300009101 Bacteria 3820
67 Ga0114129_10006498 3300009147 Bacteria 16579
68 Ga0114129_10015920 3300009147 Bacteria 10695
69 Ga0114129_10042591 3300009147 Bacteria 6392
70 Ga0114129_10072180 3300009147 Unclassified 4812
71 Ga0114129_10091074 3300009147 Bacteria 4226
72 Ga0114129_10111861 3300009147 Bacteria 3767
73 Ga0105241_10006437 3300009174 Bacteria 8655
74 Ga0105242_10082112 3300009176 Bacteria 2697
75 Ga0105248_10014664 3300009177 Bacteria 8625
76 Ga0105248_10027127 3300009177 Bacteria 6372
77 Ga0105248_10113156 3300009177 Unclassified 3061
78 Ga0105237_10000199 3300009545 Bacteria 85277
79 Ga0105237_10004972 3300009545 Bacteria 15162
80 Ga0105249_10009869 3300009553 Bacteria 8370
81 Ga0105246_10008052 3300011119 Bacteria 6470
82 Ga0157378_10001325 3300013297 Bacteria 22248
83 Ga0157378_10075959 3300013297 Unclassified 3026
84 Ga0163162_10010501 3300013306 Bacteria 9005
85 Ga0163162_10010983 3300013306 Bacteria 8820
86 Ga0163162_10034417 3300013306 Bacteria 5042
87 Ga0157372_10023328 3300013307 Bacteria 6706
88 Ga0163163_10013959 3300014325 Bacteria 7371
89 Ga0163163_10030499 3300014325 Bacteria 5196
90 Ga0163163_10102936 3300014325 Unclassified 2880
91 Ga0157380_10004987 3300014326 Bacteria 9247
92 Ga0157380_10006101 3300014326 Bacteria 8447
93 Ga0157380_10011200 3300014326 Bacteria 6473
94 Ga0157379_10011719 3300014968 Bacteria 7656
95 Ga0207680_10018302 3300025903 Bacteria 3721
96 Ga0207643_10006054 3300025908 Bacteria 6464
97 Ga0207684_10000093 3300025910 Bacteria 166136
98 Ga0207684_10011687 3300025910 Bacteria 7660
99 Ga0207684_10021586 3300025910 Bacteria 5498
100 Ga0207684_10054427 3300025910 Unclassified 3394
101 Ga0207654_10009415 3300025911 Bacteria 4960
102 Ga0207707_10000062 3300025912 Bacteria 108192
103 Ga0207660_10000608 3300025917 Bacteria 24160
104 Ga0207662_10005470 3300025918 Bacteria 6773
105 Ga0207652_10000175 3300025921 Bacteria 68407
106 Ga0207646_10000005 3300025922 Bacteria 523896
107 Ga0207646_10000254 3300025922 Bacteria 72539
108 Ga0207646_10001821 3300025922 Bacteria 25747
109 Ga0207646_10005193 3300025922 Bacteria 13760
110 Ga0207646_10008692 3300025922 Bacteria 10137
111 Ga0207646_10011913 3300025922 Bacteria 8387
112 Ga0207711_10014481 3300025941 Bacteria 6553
113 Ga0207711_10040207 3300025941 Unclassified 3978
114 Ga0207711_10043835 3300025941 Bacteria 3818
115 Ga0207689_10001232 3300025942 Bacteria 24637
116 Ga0207689_10007679 3300025942 Bacteria 9445
117 Ga0207679_10022075 3300025945 Unclassified 4328
118 Ga0207676_10004869 3300026095 Bacteria 9506
119 Ga0207676_10017244 3300026095 Bacteria 5233
120 Ga0207674_10001074 3300026116 Bacteria 35541
121 Ga0207675_100019692 3300026118 Bacteria 6299
122 Ga0207428_10002246 3300027907 Bacteria 19394
123 Ga0268264_10000096 3300028381 Bacteria 230188
124 Ga0268264_10053488 3300028381 Bacteria 3369
125 Ga0265316_10013666 3300031344 Bacteria 7200
126 Ga0265316_10020141 3300031344 Bacteria 5684
127 Ga0307509_10030337 3300031507 Bacteria 5984
128 Ga0265313_10009345 3300031595 Bacteria 6374
129 Ga0307414_10056086 3300032004 Bacteria 2762
130 Ga0373927_0021970 3300035695 Bacteria 4181
131 Ga0373933_0039845 3300035724 Bacteria 2765
132 Ga0373925_0017040 3300037068 Bacteria 5258
133 Ga0496114_0001696 3300048917 Bacteria 16742
134 Ga0496117_0011660 3300048920 Bacteria 7849
135 Ga0496121_0001825 3300048924 Bacteria 34332
136 Ga0496124_0001003 3300048927 Bacteria 44761
137 Ga0496126_0004698 3300048929 Bacteria 16140
138 Ga0501036_0056902 3300049572 Bacteria 3313
139 Ga0501075_0030353 3300049591 Unclassified 4004
140 Ga0501217_008198 3300049661 Bacteria 2252
141 Ga0501223_006322 3300049663 Bacteria 2453
142 nmdc:mga0k408_8594_c1 3300050493 Bacteria 5486
143 nmdc:mga07m45_57045_c1 3300050496 Bacteria 2208
144 nmdc:mga05p37_24054_c1 3300050507 Bacteria 7399
145 nmdc:mga05p37_37462_c1 3300050507 Bacteria 5946
146 nmdc:mga05p37_46122_c1 3300050507 Bacteria 5359
147 nmdc:mga05p37_77361_c1 3300050507 Bacteria 4096
148 nmdc:mga09592_70490_c1 3300050508 Bacteria 2966
149 nmdc:mga08y16_12395_c1 3300050511 Bacteria 8967
150 nmdc:mga0a205_89545_c1 3300050515 Bacteria 2974
151 Ga0500568_0000590 3300053139 Bacteria 26422
152 Ga0500573_0018069 3300053140 Bacteria 4017
153 Ga0070698_100024617
154 Ga0065707_10089745
155 Ga0065707_10095674
156 Ga0070690_100003932
157 Ga0068869_100010886
158 Ga0070666_10027784
159 Ga0070680_100001417
160 Ga0070680_100050817
161 Ga0070689_100003400
162 Ga0070669_100015676
163 Ga0070708_100003029
164 Ga0070708_100041687
165 Ga0070681_10000032
166 Ga0070681_10008208
167 Ga0068867_100024248
168 Ga0070706_100000075
169 Ga0070706_100014157
170 Ga0070706_100030110
171 Ga0070706_100094667
172 Ga0070707_100000087
173 Ga0070707_100007792
174 Ga0070707_100014897
175 Ga0070707_100034229
176 Ga0070698_100011804
177 Ga0070698_100021205
178 Ga0070698_100027488
179 Ga0070698_100058109
180 Ga0070698_100062960
181 Ga0070698_100086045
182 Ga0070699_100001588
183 Ga0070699_100036941
184 Ga0070679_100000331
185 Ga0070697_100001552
186 Ga0070697_100002986
187 Ga0070697_100082522
188 Ga0070686_100013077
189 Ga0070693_100023784
190 Ga0070665_100050172
191 Ga0070704_100002653
192 Ga0068857_100014783
193 Ga0070702_100010623
194 Ga0068864_100005273
195 Ga0068858_100024808
196 Ga0068858_100104397
197 Ga0068860_100000161
198 Ga0068860_100022005
199 Ga0068862_100057911
200 Ga0081539_10000742
201 Ga0081539_10005163
202 Ga0081539_10037761
203 Ga0075362_10000198
204 Ga0075367_10006950
205 Ga0097621_100015332
206 Ga0097621_100030621
207 Ga0075428_100030491
208 Ga0075428_100126487
209 Ga0075433_10010423
210 Ga0075433_10014395
211 Ga0075433_10114893
212 Ga0075429_100035848
213 Ga0105240_10035205
214 Ga0111539_10009079
215 Ga0111539_10032413
216 Ga0111539_10163752
217 Ga0111539_10193799
218 Ga0105247_10022218
219 Ga0114129_10006498
220 Ga0114129_10015920
221 Ga0114129_10042591
222 Ga0114129_10072180
223 Ga0114129_10091074
224 Ga0114129_10111861
225 Ga0105241_10006437
226 Ga0105242_10082112
227 Ga0105248_10014664
228 Ga0105248_10027127
229 Ga0105248_10113156
230 Ga0105237_10000199
231 Ga0105237_10004972
232 Ga0105249_10009869
233 Ga0105246_10008052
234 Ga0157378_10001325
235 Ga0157378_10075959
236 Ga0163162_10010501
237 Ga0163162_10010983
238 Ga0163162_10034417
239 Ga0157372_10023328
240 Ga0163163_10013959
241 Ga0163163_10030499
242 Ga0163163_10102936
243 Ga0157380_10004987
244 Ga0157380_10006101
245 Ga0157380_10011200
246 Ga0157379_10011719
247 Ga0207680_10018302
248 Ga0207643_10006054
249 Ga0207684_10000093
250 Ga0207684_10011687
251 Ga0207684_10021586
252 Ga0207684_10054427
253 Ga0207654_10009415
254 Ga0207707_10000062
255 Ga0207660_10000608
256 Ga0207662_10005470
257 Ga0207652_10000175
258 Ga0207646_10000005
259 Ga0207646_10000254
260 Ga0207646_10001821
261 Ga0207646_10005193
262 Ga0207646_10008692
263 Ga0207646_10011913
264 Ga0207711_10014481
265 Ga0207711_10040207
266 Ga0207711_10043835
267 Ga0207689_10001232
268 Ga0207689_10007679
269 Ga0207679_10022075
270 Ga0207676_10004869
271 Ga0207676_10017244
272 Ga0207674_10001074
273 Ga0207675_100019692
274 Ga0207428_10002246
275 Ga0268264_10000096
276 Ga0268264_10053488
277 Ga0265316_10013666
278 Ga0265316_10020141
279 Ga0307509_10030337
280 Ga0265313_10009345
281 Ga0307414_10056086
282 Ga0373927_0021970
283 Ga0373933_0039845
284 Ga0373925_0017040
285 Ga0496114_0001696
286 Ga0496117_0011660
287 Ga0496121_0001825
288 Ga0496124_0001003
289 Ga0496126_0004698
290 Ga0501036_0056902
291 Ga0501075_0030353
292 Ga0501217_008198
293 Ga0501223_006322
294 nmdc:mga0k408_8594_c1
295 nmdc:mga07m45_57045_c1
296 nmdc:mga05p37_24054_c1
297 nmdc:mga05p37_37462_c1
298 nmdc:mga05p37_46122_c1
299 nmdc:mga05p37_77361_c1
300 nmdc:mga09592_70490_c1
301 nmdc:mga08y16_12395_c1
302 nmdc:mga0a205_89545_c1
303 Ga0500568_0000590
304 Ga0500573_0018069

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01564

Spermine_synth

Spermine/spermidine synthase domain

335

495

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
2pss-assembly1.cif.gz_A the structure of plasmodium falciparum spermidine synthase in its apo-form 0.803 234 459
1jq3-assembly1.cif.gz_B crystal structure of spermidine synthase in complex with transition state analogue adodato 0.7758 234 458
2hte-assembly1.cif.gz_A-2 the crystal structure of spermidine synthase from p. falciparum in complex with 5'-methylthioadenosine 0.7721 231 459
4cwa-assembly2.cif.gz_B structure of plasmodium falciparum spermidine synthase in complex with 1h-benzimidazole-2-pentanamine 0.7716 234 459
1inl-assembly1.cif.gz_D crystal structure of spermidine synthase from thermotoga maritima 0.7711 234 458
ID Description Score Start End Superfamily
4cwaB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7875 272 459 3.40.50.150
af_B4E3X6_90_272_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7793 271 458 3.40.50.150
af_P19623_75_302_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7692 272 458 3.40.50.150
3g5lB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7615 276 413 3.40.50.150
3grzB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7562 274 457 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A3B9ME58-F1-model_v4 PABS domain-containing protein 0.9468 9 680 GO:0006596
GO:0016020
AF-A0A2V8S7T3-F1-model_v4 PABS domain-containing protein 0.9455 1 737 GO:0006596
GO:0016020
GO:0016740
AF-A0A2V8S7T3-F1-model_v4 PABS domain-containing protein 0.9405 1 737 GO:0006596
GO:0016020
GO:0016740
AF-A0A1Q7NI28-F1-model_v4 PABS domain-containing protein 0.9328 1 733 GO:0004766
GO:0005829
GO:0008295
GO:0016020
AF-A0A2V8P0Q5-F1-model_v4 PABS domain-containing protein 0.9323 224 468 GO:0006596
GO:0016740

Map