F212457

General Info

Members Datasets Scaffolds Average Seq Length
151 87 151 267

Family's Representative Sequence

Representative Sequence 3300046462|Ga0495651_0254463|Ga0495651_0254463_194_1126
Length 310
Sequence MPLPENNPFWRTHELDEKQTRRNAPPQRSGTSAFCCSILPLFQSSTFPSFHHSILLIMWGVIPAAGAGTRIQPLAFSKELLPVGSRFDGQTERPRAVSEYIIERMIRAGANRICFVISPGKSDILSYFGAGLDGTTFAYVVQPRPAGLCDALFRALPLIAPHEQVLFGLPDTIWFPENGLALLPDDCLSFLTFPVEHPEFFDAVVTDDQDRVLEVQVKTKAARSKSIWGAFKMPGQVMQELHDLWNERNGQDEYLGTLVNEYLARGGQAKAVHAGEKYVDIGTLHGYRNAIQLLSAKQPEMDEIYDALKS

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
21 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
26 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
29 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
30 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
31 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
32 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
33 3300020075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
34 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
35 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
36 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
37 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
38 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
39 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
40 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
58 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
59 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
60 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
61 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
62 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
63 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
64 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
65 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
68 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
69 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
70 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
71 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
72 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
73 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
74 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
77 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
78 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
79 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
80 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
81 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
82 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
83 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
84 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
85 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
86 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
87 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.38
Metatranscriptomes 6.62
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.66
Rhizosphere 96.03
Stem 0
Stem Tuber 0
Unclassified 3.31

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10333427 3300003323 Unclassified 1766
2 Ga0070658_10004165 3300005327 Bacteria 11840
3 Ga0070683_100080946 3300005329 Bacteria 3040
4 Ga0070683_100374721 3300005329 Bacteria 1356
5 Ga0070680_100199187 3300005336 Bacteria 1688
6 Ga0070680_100204463 3300005336 Bacteria 1665
7 Ga0070660_100212733 3300005339 Bacteria 1570
8 Ga0070660_100234735 3300005339 Bacteria 1493
9 Ga0070661_100039761 3300005344 Bacteria 3427
10 Ga0070659_100018994 3300005366 Bacteria 5197
11 Ga0070659_100322456 3300005366 Bacteria 1292
12 Ga0070659_100599735 3300005366 Bacteria 946
13 Ga0070714_100158379 3300005435 Bacteria 2046
14 Ga0070714_100260514 3300005435 Bacteria 1606
15 Ga0070714_100298360 3300005435 Bacteria 1501
16 Ga0070714_100548321 3300005435 Bacteria 1107
17 Ga0070681_10034092 3300005458 Bacteria 5112
18 Ga0070681_10055002 3300005458 Bacteria 3965
19 Ga0070681_10295713 3300005458 Bacteria 1529
20 Ga0070681_10320524 3300005458 Bacteria 1459
21 Ga0070679_100040991 3300005530 Bacteria 4608
22 Ga0070679_100235656 3300005530 Unclassified 1789
23 Ga0070679_100256945 3300005530 Bacteria 1702
24 Ga0070679_100541174 3300005530 Bacteria 1108
25 Ga0070684_100037784 3300005535 Bacteria 4144
26 Ga0068853_100115223 3300005539 Bacteria 2392
27 Ga0068853_100272966 3300005539 Bacteria 1557
28 Ga0070665_100342924 3300005548 Bacteria 1499
29 Ga0068855_100005800 3300005563 Bacteria 15070
30 Ga0068855_100017111 3300005563 Bacteria 8721
31 Ga0068855_100017904 3300005563 Bacteria 8513
32 Ga0068855_100057456 3300005563 Bacteria 4560
33 Ga0068855_100356012 3300005563 Bacteria 1611
34 Ga0068855_100408755 3300005563 Bacteria 1486
35 Ga0070664_100509072 3300005564 Bacteria 1110
36 Ga0068857_100205932 3300005577 Bacteria 1794
37 Ga0068854_100048468 3300005578 Bacteria 3031
38 Ga0068856_100290683 3300005614 Bacteria 1651
39 Ga0068856_100444781 3300005614 Bacteria 1317
40 Ga0068852_100000027 3300005616 Bacteria 113819
41 Ga0068852_100112433 3300005616 Bacteria 2478
42 Ga0068852_100490646 3300005616 Bacteria 1222
43 Ga0068851_10037510 3300005834 Bacteria 2430
44 Ga0081538_10037856 3300005981 Bacteria 3120
45 Ga0105240_10000222 3300009093 Bacteria 113825
46 Ga0105240_10049184 3300009093 Bacteria 5323
47 Ga0105240_10153001 3300009093 Bacteria 2746
48 Ga0105240_10324817 3300009093 Bacteria 1753
49 Ga0105237_10328693 3300009545 Bacteria 1533
50 Ga0105238_10028865 3300009551 Bacteria 5650
51 Ga0105238_10100281 3300009551 Bacteria 2879
52 Ga0105238_10279582 3300009551 Bacteria 1650
53 Ga0157371_10236894 3300013102 Bacteria 1312
54 Ga0157370_10001610 3300013104 Bacteria 27915
55 Ga0157370_10291828 3300013104 Unclassified 1506
56 Ga0157370_10326382 3300013104 Bacteria 1415
57 Ga0157369_10000112 3300013105 Bacteria 114309
58 Ga0157369_10072665 3300013105 Bacteria 3692
59 Ga0157369_10239764 3300013105 Bacteria 1894
60 Ga0157369_10269802 3300013105 Unclassified 1773
61 Ga0157374_10355066 3300013296 Bacteria 1457
62 Ga0157372_10001211 3300013307 Bacteria 27915
63 Ga0157372_10094842 3300013307 Bacteria 3399
64 Ga0157372_10387045 3300013307 Bacteria 1629
65 Ga0182008_10002790 3300014497 Bacteria 10820
66 Ga0197907_11178625 3300020069 Unclassified 1009
67 Ga0206356_10674644 3300020070 Bacteria 1058
68 Ga0206349_1711501 3300020075 Unclassified 1045
69 Ga0206351_10205648 3300020077 Unclassified 1517
70 Ga0206351_10345708 3300020077 Bacteria 1562
71 Ga0206350_10070432 3300020080 Bacteria 2607
72 Ga0206350_10425074 3300020080 Unclassified 1979
73 Ga0206350_11490550 3300020080 Bacteria 4155
74 Ga0154015_1043269 3300020610 Bacteria 2149
75 Ga0213874_10033454 3300021377 Bacteria 1499
76 Ga0213875_10000098 3300021388 Bacteria 98684
77 Ga0224712_10018230 3300022467 Unclassified 2343
78 Ga0207685_10100323 3300025905 Unclassified 1236
79 Ga0207705_10008626 3300025909 Bacteria 7430
80 Ga0207705_10025654 3300025909 Bacteria 4205
81 Ga0207705_10460922 3300025909 Unclassified 986
82 Ga0207707_10047704 3300025912 Bacteria 3730
83 Ga0207707_10142363 3300025912 Bacteria 2096
84 Ga0207707_10288234 3300025912 Bacteria 1421
85 Ga0207695_10000028 3300025913 Bacteria 551835
86 Ga0207695_10034627 3300025913 Bacteria 5488
87 Ga0207695_10439929 3300025913 Unclassified 1187
88 Ga0207660_10001424 3300025917 Bacteria 16048
89 Ga0207660_10118600 3300025917 Bacteria 2002
90 Ga0207660_10220595 3300025917 Bacteria 1488
91 Ga0207660_10307109 3300025917 Bacteria 1264
92 Ga0207657_10088299 3300025919 Unclassified 2592
93 Ga0207649_10125504 3300025920 Bacteria 1736
94 Ga0207649_10188345 3300025920 Unclassified 1449
95 Ga0207652_10125759 3300025921 Bacteria 2283
96 Ga0207652_10286344 3300025921 Bacteria 1487
97 Ga0207694_10034128 3300025924 Bacteria 3900
98 Ga0207664_10179942 3300025929 Bacteria 1815
99 Ga0207664_10283039 3300025929 Bacteria 1455
100 Ga0207664_10359825 3300025929 Bacteria 1289
101 Ga0207661_10051294 3300025944 Bacteria 3291
102 Ga0207661_10218893 3300025944 Unclassified 1682
103 Ga0207667_10004966 3300025949 Bacteria 16249
104 Ga0207667_10014980 3300025949 Bacteria 8819
105 Ga0207667_10112810 3300025949 Bacteria 2803
106 Ga0207667_10201040 3300025949 Bacteria 2044
107 Ga0207667_10239784 3300025949 Unclassified 1856
108 Ga0207667_10345723 3300025949 Bacteria 1517
109 Ga0207640_10018776 3300025981 Bacteria 4069
110 Ga0207639_10066476 3300026041 Bacteria 2802
111 Ga0207678_10005705 3300026067 Bacteria 11113
112 Ga0207698_10000021 3300026142 Bacteria 133280
113 Ga0207698_10200926 3300026142 Bacteria 1785
114 Ga0268266_10003144 3300028379 Bacteria 16769
115 Ga0265316_10083386 3300031344 Bacteria 2449
116 Ga0265314_10311844 3300031711 Bacteria 878
117 Ga0265342_10171329 3300031712 Bacteria 1194
118 Ga0307409_100617412 3300031995 Bacteria 1074
119 Ga0307411_10172679 3300032005 Bacteria 1632
120 Ga0373927_0130731 3300035695 Unclassified 1640
121 Ga0373925_0051826 3300037068 Unclassified 3064
122 Ga0395898_0474959 3300037466 Bacteria 1190
123 Ga0436364_1390920 3300037853 Bacteria 113944
124 Ga0395901_0277068 3300038443 Bacteria 1744
125 Ga0395901_0410837 3300038443 Bacteria 1390
126 Ga0436365_0955264 3300039437 Bacteria 2023
127 Ga0436360_0200062 3300039438 Bacteria 2330
128 Ga0436360_0748924 3300039438 Bacteria 1927
129 Ga0436360_1160207 3300039438 Bacteria 1165
130 Ga0436361_0997162 3300039447 Bacteria 2317
131 Ga0436361_1033703 3300039447 Bacteria 2017
132 Ga0436362_0069870 3300039453 Bacteria 1154
133 Ga0436362_0819159 3300039453 Bacteria 1697
134 Ga0451807_0565213 3300041486 Bacteria 6095
135 Ga0466966_0007556 3300044684 Bacteria 7201
136 Ga0466963_0003031 3300044694 Bacteria 9511
137 Ga0466964_0031538 3300044706 Bacteria 2103
138 Ga0453684_0029421 3300044712 Bacteria 7798
139 Ga0466959_0043944 3300045049 Bacteria 3292
140 Ga0466959_0067119 3300045049 Bacteria 2601
141 Ga0466958_0376635 3300045836 Bacteria 915
142 Ga0466967_0004335 3300045976 Bacteria 9541
143 Ga0495651_0254463 3300046462 Bacteria 1198
144 Ga0495613_0159605 3300046689 Bacteria 1605
145 Ga0495676_0295660 3300047321 Unclassified 1093
146 Ga0495686_0115567 3300047472 Bacteria 1604
147 Ga0501075_0016526 3300049591 Bacteria 5317
148 Ga0501079_0150269 3300049741 Bacteria 1816
149 Ga0501080_0433063 3300049742 Bacteria 1180
150 Ga0501045_0057617 3300049824 Bacteria 2843
151 Ga0501084_0113373 3300054114 Bacteria 2279

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037466 Ga0395898_0474959 Ga0395898_0474959_289_1074 241
2 3300045836 Ga0466958_0376635 Ga0466958_0376635_23_775 247
3 3300041486 Ga0451807_0565213 Ga0451807_0565213_1982_2728 248
4 3300005366 Ga0070659_100599735 Ga0070659_1005997351 250
5 3300005458 Ga0070681_10055002 Ga0070681_100550024 250
6 3300005535 Ga0070684_100037784 Ga0070684_1000377844 250
7 3300005563 Ga0068855_100356012 Ga0068855_1003560122 250
8 3300009093 Ga0105240_10049184 Ga0105240_100491844 250
9 3300009551 Ga0105238_10279582 Ga0105238_102795821 250
10 3300020080 Ga0206350_10070432 Ga0206350_100704322 250
11 3300025912 Ga0207707_10142363 Ga0207707_101423632 250
12 3300025913 Ga0207695_10034627 Ga0207695_100346274 250
13 3300025921 Ga0207652_10125759 Ga0207652_101257593 250
14 3300025949 Ga0207667_10201040 Ga0207667_102010403 250
15 3300028379 Ga0268266_10003144 Ga0268266_100031447 250
16 3300047472 Ga0495686_0115567 Ga0495686_0115567_440_1192 250
17 3300039453 Ga0436362_0819159 Ga0436362_0819159_486_1250 252
18 3300044706 Ga0466964_0031538 Ga0466964_0031538_1022_1780 252
19 3300049591 Ga0501075_0016526 Ga0501075_0016526_377_1141 252
20 3300049741 Ga0501079_0150269 Ga0501079_0150269_213_977 252
21 3300049742 Ga0501080_0433063 Ga0501080_0433063_389_1153 252
22 3300049824 Ga0501045_0057617 Ga0501045_0057617_337_1101 252
23 3300054114 Ga0501084_0113373 Ga0501084_0113373_121_885 252
24 3300005435 Ga0070714_100260514 Ga0070714_1002605142 253
25 3300025929 Ga0207664_10179942 Ga0207664_101799422 253
26 3300046462 Ga0495651_0254463 Ga0495651_0254463_194_1126 253
27 3300038443 Ga0395901_0277068 Ga0395901_0277068_561_1325 254
28 3300009545 Ga0105237_10328693 Ga0105237_103286932 255
29 3300031344 Ga0265316_10083386 Ga0265316_100833862 257
30 3300031711 Ga0265314_10311844 Ga0265314_103118441 257
31 3300031712 Ga0265342_10171329 Ga0265342_101713291 257
32 3300021377 Ga0213874_10033454 Ga0213874_100334542 258
33 3300025905 Ga0207685_10100323 Ga0207685_101003232 258
34 3300039438 Ga0436360_0748924 Ga0436360_0748924_546_1322 258
35 3300021388 Ga0213875_10000098 Ga0213875_1000009849 259
36 3300037853 Ga0436364_1390920 Ga0436364_1390920_47975_48754 259
37 3300039437 Ga0436365_0955264 Ga0436365_0955264_1038_1817 259
38 3300039438 Ga0436360_1160207 Ga0436360_1160207_219_998 259
39 3300044684 Ga0466966_0007556 Ga0466966_0007556_6068_6853 260
40 3300045049 Ga0466959_0043944 Ga0466959_0043944_1803_2588 260
41 3300039438 Ga0436360_0200062 Ga0436360_0200062_61_846 261
42 3300039447 Ga0436361_1033703 Ga0436361_1033703_933_1718 261
43 3300039453 Ga0436362_0069870 Ga0436362_0069870_92_877 261
44 3300005981 Ga0081538_10037856 Ga0081538_100378563 262
45 3300031995 Ga0307409_100617412 Ga0307409_1006174121 262
46 3300046689 Ga0495613_0159605 Ga0495613_0159605_304_1092 262
47 3300005435 Ga0070714_100158379 Ga0070714_1001583791 263
48 3300005548 Ga0070665_100342924 Ga0070665_1003429242 263
49 3300025929 Ga0207664_10359825 Ga0207664_103598252 263
50 3300039447 Ga0436361_0997162 Ga0436361_0997162_87_878 263
51 3300005530 Ga0070679_100541174 Ga0070679_1005411742 264
52 3300005329 Ga0070683_100080946 Ga0070683_1000809463 265
53 3300005339 Ga0070660_100212733 Ga0070660_1002127332 265
54 3300005366 Ga0070659_100018994 Ga0070659_1000189945 265
55 3300005435 Ga0070714_100548321 Ga0070714_1005483212 265
56 3300005458 Ga0070681_10295713 Ga0070681_102957132 265
57 3300005530 Ga0070679_100235656 Ga0070679_1002356562 265
58 3300005539 Ga0068853_100272966 Ga0068853_1002729662 265
59 3300005563 Ga0068855_100005800 Ga0068855_1000058005 265
60 3300005563 Ga0068855_100057456 Ga0068855_1000574564 265
61 3300005564 Ga0070664_100509072 Ga0070664_1005090722 265
62 3300005577 Ga0068857_100205932 Ga0068857_1002059322 265
63 3300005616 Ga0068852_100000027 Ga0068852_10000002721 265
64 3300005616 Ga0068852_100490646 Ga0068852_1004906462 265
65 3300005834 Ga0068851_10037510 Ga0068851_100375102 265
66 3300009093 Ga0105240_10000222 Ga0105240_1000022220 265
67 3300009093 Ga0105240_10324817 Ga0105240_103248172 265
68 3300009551 Ga0105238_10028865 Ga0105238_100288656 265
69 3300013102 Ga0157371_10236894 Ga0157371_102368942 265
70 3300013104 Ga0157370_10001610 Ga0157370_1000161020 265
71 3300013104 Ga0157370_10291828 Ga0157370_102918281 265
72 3300013105 Ga0157369_10000112 Ga0157369_1000011221 265
73 3300013105 Ga0157369_10269802 Ga0157369_102698022 265
74 3300013296 Ga0157374_10355066 Ga0157374_103550661 265
75 3300013307 Ga0157372_10001211 Ga0157372_1000121120 265
76 3300013307 Ga0157372_10387045 Ga0157372_103870452 265
77 3300020069 Ga0197907_11178625 Ga0197907_111786252 265
78 3300020075 Ga0206349_1711501 Ga0206349_17115012 265
79 3300020077 Ga0206351_10205648 Ga0206351_102056482 265
80 3300020080 Ga0206350_10425074 Ga0206350_104250742 265
81 3300020080 Ga0206350_11490550 Ga0206350_114905504 265
82 3300022467 Ga0224712_10018230 Ga0224712_100182303 265
83 3300025909 Ga0207705_10025654 Ga0207705_100256544 265
84 3300025909 Ga0207705_10460922 Ga0207705_104609221 265
85 3300025913 Ga0207695_10000028 Ga0207695_10000028198 265
86 3300025913 Ga0207695_10439929 Ga0207695_104399292 265
87 3300025920 Ga0207649_10188345 Ga0207649_101883452 265
88 3300025924 Ga0207694_10034128 Ga0207694_100341284 265
89 3300025944 Ga0207661_10051294 Ga0207661_100512943 265
90 3300025944 Ga0207661_10218893 Ga0207661_102188932 265
91 3300025949 Ga0207667_10004966 Ga0207667_100049669 265
92 3300025949 Ga0207667_10239784 Ga0207667_102397842 265
93 3300026041 Ga0207639_10066476 Ga0207639_100664762 265
94 3300026067 Ga0207678_10005705 Ga0207678_100057059 265
95 3300026142 Ga0207698_10000021 Ga0207698_10000021103 265
96 3300026142 Ga0207698_10200926 Ga0207698_102009261 265
97 3300032005 Ga0307411_10172679 Ga0307411_101726791 265
98 3300035695 Ga0373927_0130731 Ga0373927_0130731_363_1160 265
99 3300037068 Ga0373925_0051826 Ga0373925_0051826_392_1189 265
100 3300044694 Ga0466963_0003031 Ga0466963_0003031_696_1493 265
101 3300045976 Ga0466967_0004335 Ga0466967_0004335_6883_7680 265
102 3300047321 Ga0495676_0295660 Ga0495676_0295660_205_1002 265
103 3300005327 Ga0070658_10004165 Ga0070658_100041656 266
104 3300005329 Ga0070683_100374721 Ga0070683_1003747212 266
105 3300005336 Ga0070680_100204463 Ga0070680_1002044632 266
106 3300005458 Ga0070681_10320524 Ga0070681_103205242 266
107 3300005530 Ga0070679_100040991 Ga0070679_1000409914 266
108 3300005530 Ga0070679_100256945 Ga0070679_1002569452 266
109 3300005563 Ga0068855_100017111 Ga0068855_1000171112 266
110 3300005614 Ga0068856_100290683 Ga0068856_1002906832 266
111 3300009551 Ga0105238_10100281 Ga0105238_101002813 266
112 3300013105 Ga0157369_10072665 Ga0157369_100726653 266
113 3300013307 Ga0157372_10094842 Ga0157372_100948423 266
114 3300020070 Ga0206356_10674644 Ga0206356_106746441 266
115 3300020077 Ga0206351_10345708 Ga0206351_103457082 266
116 3300020610 Ga0154015_1043269 Ga0154015_10432692 266
117 3300025909 Ga0207705_10008626 Ga0207705_100086266 266
118 3300025912 Ga0207707_10047704 Ga0207707_100477043 266
119 3300025912 Ga0207707_10288234 Ga0207707_102882342 266
120 3300025917 Ga0207660_10118600 Ga0207660_101186003 266
121 3300025917 Ga0207660_10220595 Ga0207660_102205952 266
122 3300025921 Ga0207652_10286344 Ga0207652_102863442 266
123 3300025949 Ga0207667_10112810 Ga0207667_101128102 266
124 3300038443 Ga0395901_0410837 Ga0395901_0410837_452_1252 266
125 3300005563 Ga0068855_100017904 Ga0068855_1000179044 267
126 3300025917 Ga0207660_10001424 Ga0207660_100014249 267
127 3300025949 Ga0207667_10014980 Ga0207667_100149805 267
128 3300045049 Ga0466959_0067119 Ga0466959_0067119_292_1128 267
129 3300044712 Ga0453684_0029421 Ga0453684_0029421_6924_7769 268
130 3300005336 Ga0070680_100199187 Ga0070680_1001991872 269
131 3300005339 Ga0070660_100234735 Ga0070660_1002347352 269
132 3300005344 Ga0070661_100039761 Ga0070661_1000397612 269
133 3300005366 Ga0070659_100322456 Ga0070659_1003224562 269
134 3300005435 Ga0070714_100298360 Ga0070714_1002983602 269
135 3300005458 Ga0070681_10034092 Ga0070681_100340923 269
136 3300005539 Ga0068853_100115223 Ga0068853_1001152232 269
137 3300005563 Ga0068855_100408755 Ga0068855_1004087552 269
138 3300005578 Ga0068854_100048468 Ga0068854_1000484682 269
139 3300005614 Ga0068856_100444781 Ga0068856_1004447812 269
140 3300005616 Ga0068852_100112433 Ga0068852_1001124332 269
141 3300009093 Ga0105240_10153001 Ga0105240_101530012 269
142 3300013104 Ga0157370_10326382 Ga0157370_103263821 269
143 3300013105 Ga0157369_10239764 Ga0157369_102397642 269
144 3300014497 Ga0182008_10002790 Ga0182008_100027903 269
145 3300025917 Ga0207660_10307109 Ga0207660_103071092 269
146 3300025919 Ga0207657_10088299 Ga0207657_100882992 269
147 3300025920 Ga0207649_10125504 Ga0207649_101255042 269
148 3300025929 Ga0207664_10283039 Ga0207664_102830391 269
149 3300025949 Ga0207667_10345723 Ga0207667_103457232 269
150 3300025981 Ga0207640_10018776 Ga0207640_100187762 269
151 3300003323 rootH1_10333427 rootH1_103334272 270

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00483

NTP_transferase

Nucleotidyl transferase

59

297

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
2ggo-assembly1.cif.gz_A crystal structure of glucose-1-phosphate thymidylyltransferase from sulfolobus tokodaii 0.8322 1 242
4hoc-assembly1.cif.gz_A crystal structure of glucose 1-phosphate thymidylyltransferase from aneurinibacillus thermoaerophilus complexed with udp-n-acetylglucosamine 0.8224 1 239
5z09-assembly2.cif.gz_D-5 st0452(y97n)-utp binding form 0.8217 1 242
5z0a-assembly1.cif.gz_E-2 st0452(y97n)-glcnac binding form 0.8189 1 242
5i1f-assembly1.cif.gz_A-2 crystal structure of utp-glucose-1-phosphate uridylyltransferase from burkholderia vietnamiensis in complex with uridine-5'-diphosphate-glucose 0.8122 1 242
ID Description Score Start End Superfamily
5z0aE01 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8245 1 225 3.90.550.10
5z0aE01 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8209 1 225 3.90.550.10
af_Q58501_1_209_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8192 1 225 3.90.550.10
af_Q58501_1_209_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8156 1 225 3.90.550.10
4ecmA00 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8059 1 249 3.90.550.10
ID Description Score Start End GO Terms
AF-A0A528B1J9-F1-model_v4 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.9866 47 240 GO:0008879
GO:0045226
AF-A0A528CHH8-F1-model_v4 Nucleotidyltransferase family protein 0.9858 83 242 GO:0008879
GO:0045226
AF-F5XX04-F1-model_v4 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.9797 26 240 GO:0008879
GO:0045226
AF-A0A436BJ97-F1-model_v4 Nucleotidyltransferase family protein 0.9783 122 241 GO:0016740
AF-A0A4P2Q7N9-F1-model_v4 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.9694 1 242 GO:0008879
GO:0045226

Feature Viewer

pLDDT pTM Quality
84.61 0.84 High
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Predicted Structure (AlphaFold2)

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