F209048

General Info

Members Datasets Scaffolds Average Seq Length
150 106 142 311

Family's Representative Sequence

Representative Sequence 3300028653|Ga0265323_10000530|Ga0265323_1000053012
Length 371
Sequence MMEMRGVISVGRPKLERISAGDEIKFPARTAGCQNLLCCLSDCFYCGDRKSGSTINQQPNEMNILVTGGAGFIGSHLVEYFQDKAGVRVLDNLCSGFRDNLDGLQCEFLQGSILDRDLVRRAMQGVDYVFHLAALVSVAESMQKPVECAETNTVGTLVVLEEAARAKVKKLVLSSSAAIYGDNPVVPKIETMPPEPKSPYAISKLDGEFYSRMFAAEGRLQTVCLRYFNVFGPRQNPRSQYAAAVPIFIDRALKNEPITIFGDGEQTRDFIYVQDVVAANVFFATRPPAPGVFNVACGQSLTINELAANICRLTGSRSEIKHAAERPGDVKHSLADIGKLRAAGFIPPGDFHGGLQATIRFFKGNGSKCAC

Samples

Sample ID Description Type Environment
1 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
2 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
3 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
4 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
5 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
6 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
7 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
8 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
9 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
12 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
13 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
14 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
17 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
25 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
26 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
27 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
37 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
51 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
52 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
53 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
54 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
55 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
56 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
57 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
58 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
59 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
60 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
61 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
62 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
63 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
64 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
65 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
66 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
67 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
68 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
69 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
70 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
71 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
72 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
75 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
76 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
77 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
78 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
79 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
80 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
81 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
82 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
83 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
84 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
97 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
98 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
99 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
100 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
101 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
103 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
104 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
105 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
106 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.67
Metatranscriptomes 0
Isolates 5.33

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2
Nodule 0
Rhizoplane 0
Rhizosphere 88.67
Stem 0
Stem Tuber 0
Unclassified 9.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10000834 3300003320 Bacteria 40472
2 rootH2_10016615 3300003320 Bacteria 33149
3 rootH2_10032397 3300003320 Bacteria 5689
4 rootH1_10171540 3300003323 Bacteria 1832
5 rootH1_10266920 3300003323 Bacteria 5478
6 rootH1_10275084 3300003323 Bacteria 4739
7 Ga0070658_10091167 3300005327 Bacteria 2512
8 Ga0070683_100310157 3300005329 Bacteria 1501
9 Ga0070683_100333561 3300005329 Bacteria 1444
10 Ga0070690_100000503 3300005330 Bacteria 19579
11 Ga0070689_100026653 3300005340 Bacteria 4353
12 Ga0070714_100003088 3300005435 Bacteria 12361
13 Ga0070713_100073390 3300005436 Unclassified 2896
14 Ga0070685_10165298 3300005466 Bacteria 1414
15 Ga0070679_100028951 3300005530 Bacteria 5463
16 Ga0070679_100089774 3300005530 Bacteria 3060
17 Ga0068855_100014604 3300005563 Bacteria 9459
18 Ga0068855_100050512 3300005563 Bacteria 4900
19 Ga0068855_100106682 3300005563 Unclassified 3219
20 Ga0068855_100289725 3300005563 Unclassified 1815
21 Ga0068856_100000258 3300005614 Bacteria 57987
22 Ga0068856_100000426 3300005614 Bacteria 46290
23 Ga0068859_100047305 3300005617 Bacteria 4322
24 Ga0068863_100045984 3300005841 Bacteria 4143
25 Ga0068863_100362092 3300005841 Bacteria 1414
26 Ga0068863_100560050 3300005841 Bacteria 1129
27 Ga0068863_100687770 3300005841 Bacteria 1016
28 Ga0068860_100002188 3300005843 Bacteria 20567
29 Ga0070716_100058138 3300006173 Bacteria 2224
30 Ga0075367_10190646 3300006178 Bacteria 1279
31 Ga0075433_10009708 3300006852 Bacteria 7708
32 Ga0075434_100513102 3300006871 Bacteria 1219
33 Ga0097620_100047306 3300006931 Bacteria 4322
34 Ga0099794_10001447 3300007265 Bacteria 8305
35 Ga0105240_10000170 3300009093 Bacteria 133127
36 Ga0105240_10522022 3300009093 Bacteria 1318
37 Ga0114129_10201857 3300009147 Bacteria 2692
38 Ga0105238_10004726 3300009551 Bacteria 13470
39 Ga0105238_10124476 3300009551 Bacteria 2557
40 Ga0105239_10007389 3300010375 Bacteria 12610
41 Ga0105246_10193035 3300011119 Bacteria 1577
42 Ga0157372_10115971 3300013307 Bacteria 3071
43 Ga0163163_10020026 3300014325 Bacteria 6295
44 Ga0207707_10348529 3300025912 Bacteria 1276
45 Ga0207695_10000208 3300025913 Bacteria 158591
46 Ga0207695_10396053 3300025913 Bacteria 1265
47 Ga0207652_10067426 3300025921 Bacteria 3103
48 Ga0207694_10004195 3300025924 Bacteria 11298
49 Ga0207700_10046018 3300025928 Unclassified 3224
50 Ga0207664_10002249 3300025929 Bacteria 12707
51 Ga0207665_10136538 3300025939 Bacteria 1745
52 Ga0207661_10251890 3300025944 Bacteria 1570
53 Ga0207667_10042510 3300025949 Bacteria 4829
54 Ga0207667_10244889 3300025949 Unclassified 1834
55 Ga0207712_10221497 3300025961 Bacteria 1513
56 Ga0207702_10000850 3300026078 Bacteria 31954
57 Ga0207641_10665707 3300026088 Bacteria 1023
58 Ga0268264_10004568 3300028381 Bacteria 11789
59 Ga0268264_10161658 3300028381 Bacteria 2018
60 Ga0265337_1000498 3300028556 Bacteria 20870
61 Ga0265323_10000530 3300028653 Bacteria 21168
62 Ga0265322_10023497 3300028654 Unclassified 1763
63 Ga0265336_10002484 3300028666 Bacteria 7560
64 Ga0265338_10000487 3300028800 Bacteria 70806
65 Ga0265338_10000828 3300028800 Bacteria 52193
66 Ga0265338_10002260 3300028800 Bacteria 29339
67 Ga0265338_10048180 3300028800 Bacteria 3881
68 Ga0265338_10112046 3300028800 Bacteria 2195
69 Ga0265324_10023513 3300029957 Bacteria 2194
70 Ga0265328_10038537 3300031239 Bacteria 1764
71 Ga0265320_10003114 3300031240 Bacteria 11260
72 Ga0265320_10061433 3300031240 Unclassified 1791
73 Ga0265331_10027454 3300031250 Bacteria 2853
74 Ga0265327_10000379 3300031251 Bacteria 83712
75 Ga0265327_10000818 3300031251 Bacteria 46934
76 Ga0265327_10008906 3300031251 Bacteria 7367
77 Ga0265327_10074717 3300031251 Bacteria 1687
78 Ga0265316_10006474 3300031344 Bacteria 11174
79 Ga0265316_10029904 3300031344 Bacteria 4472
80 Ga0265316_10353284 3300031344 Bacteria 1064
81 Ga0307408_100003210 3300031548 Bacteria 11249
82 Ga0316578_10058157 3300031728 Bacteria 2273
83 Ga0307410_10000027 3300031852 Bacteria 52776
84 Ga0307406_10002244 3300031901 Bacteria 10523
85 Ga0307409_100001188 3300031995 Bacteria 12468
86 Ga0307414_10022766 3300032004 Bacteria 3959
87 Ga0316583_10041469 3300032133 Bacteria 1629
88 Ga0316582_0027587 3300036647 Bacteria 3432
89 Ga0373925_0043228 3300037068 Bacteria 3344
90 Ga0373925_0115060 3300037068 Unclassified 2082
91 Ga0400487_09616 3300039110 Bacteria 4149
92 Ga0451577_0063318 3300042876 Bacteria 3298
93 Ga0453683_0000551 3300044673 Bacteria 41720
94 Ga0453684_0014227 3300044712 Bacteria 12767
95 Ga0453684_0211815 3300044712 Bacteria 2252
96 Ga0451576_0019994 3300045051 Bacteria 7298
97 Ga0451576_0249896 3300045051 Bacteria 1853
98 Ga0451576_0253017 3300045051 Unclassified 1841
99 Ga0495662_0007269 3300046476 Bacteria 5481
100 Ga0495618_0007732 3300046514 Bacteria 6503
101 Ga0495628_0000135 3300046516 Bacteria 62985
102 Ga0495630_0010483 3300046517 Bacteria 6694
103 Ga0495630_0044588 3300046517 Bacteria 3314
104 Ga0495666_0003568 3300046526 Bacteria 7867
105 Ga0495586_0000494 3300046535 Bacteria 23398
106 Ga0495586_0069215 3300046535 Bacteria 1926
107 Ga0495645_0005905 3300046543 Bacteria 8456
108 Ga0495674_0039052 3300047319 Bacteria 4256
109 Ga0496125_0133290 3300048928 Bacteria 1744
110 Ga0501031_0000026 3300049568 Bacteria 84878
111 Ga0501031_0014336 3300049568 Bacteria 5153
112 Ga0501032_0000335 3300049569 Bacteria 39338
113 Ga0501032_0004402 3300049569 Bacteria 10633
114 Ga0501032_0017317 3300049569 Bacteria 5059
115 Ga0501033_0001186 3300049570 Bacteria 23527
116 Ga0501033_0001874 3300049570 Bacteria 18292
117 Ga0501033_0016913 3300049570 Bacteria 5513
118 Ga0501034_0131003 3300049571 Bacteria 2491
119 Ga0501036_0051876 3300049572 Bacteria 3473
120 Ga0501037_0046879 3300049573 Bacteria 3168
121 Ga0501038_0008799 3300049574 Bacteria 9260
122 Ga0501039_0042845 3300049575 Bacteria 3497
123 Ga0501039_0110194 3300049575 Bacteria 2152
124 Ga0501042_0065223 3300049578 Bacteria 2602
125 Ga0501043_0039597 3300049579 Bacteria 3704
126 Ga0501043_0060095 3300049579 Bacteria 2983
127 Ga0501043_0117202 3300049579 Bacteria 2089
128 Ga0501046_0000465 3300049580 Bacteria 40544
129 Ga0501047_0010708 3300049581 Bacteria 8668
130 Ga0501068_0050999 3300049584 Bacteria 2503
131 Ga0501073_0135829 3300049589 Bacteria 1705
132 Ga0501223_004772 3300049663 Bacteria 2885
133 Ga0501227_002294 3300049665 Bacteria 4228
134 Ga0501280_000740 3300049776 Bacteria 7173
135 Ga0501035_0011292 3300049822 Bacteria 8275
136 Ga0501044_0000135 3300049823 Bacteria 90469
137 Ga0501044_0040994 3300049823 Bacteria 4821
138 Ga0501044_0231364 3300049823 Bacteria 1796
139 nmdc:mga06z11_161913_c1 3300050494 Bacteria 1279
140 nmdc:mga05p37_6055_c1 3300050507 Bacteria 14239
141 nmdc:mga0n895_9695_c1 3300050512 Bacteria 8447
142 Ga0500559_0000351 3300053136 Bacteria 34564

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049776 Ga0501280_000740 Ga0501280_000740_5868_6767 287
2 iso_pu_bacteria 2643221600 2644009885 296
3 iso_pu_bacteria 2643221716 2644640052 296
4 iso_pu_bacteria 2739367857 2740001433 296
5 iso_pu_bacteria 2739367858 2740006249 296
6 iso_pu_bacteria 2765235839 2765573942 296
7 iso_pu_bacteria 2904419702 2904424301 296
8 iso_pu_bacteria 2919191525 2919192032 296
9 iso_pu_bacteria 2919683626 2919687940 296
10 3300006178 Ga0075367_10190646 Ga0075367_101906462 299
11 3300031852 Ga0307410_10000027 Ga0307410_1000002736 299
12 3300045051 Ga0451576_0019994 Ga0451576_0019994_1581_2480 299
13 3300050494 nmdc:mga06z11_161913_c1 nmdc:mga06z11_161913_c1_138_1070 299
14 3300005327 Ga0070658_10091167 Ga0070658_100911672 300
15 3300005436 Ga0070713_100073390 Ga0070713_1000733902 300
16 3300025928 Ga0207700_10046018 Ga0207700_100460181 300
17 3300031728 Ga0316578_10058157 Ga0316578_100581572 300
18 3300036647 Ga0316582_0027587 Ga0316582_0027587_355_1296 300
19 3300044712 Ga0453684_0014227 Ga0453684_0014227_2594_3514 300
20 3300049663 Ga0501223_004772 Ga0501223_004772_85_996 300
21 3300003320 rootH2_10000834 rootH2_1000083417 301
22 3300003320 rootH2_10016615 rootH2_1001661516 301
23 3300003320 rootH2_10032397 rootH2_100323973 301
24 3300003323 rootH1_10171540 rootH1_101715402 301
25 3300003323 rootH1_10266920 rootH1_102669204 301
26 3300003323 rootH1_10275084 rootH1_102750843 301
27 3300005329 Ga0070683_100310157 Ga0070683_1003101572 301
28 3300005329 Ga0070683_100333561 Ga0070683_1003335612 301
29 3300005330 Ga0070690_100000503 Ga0070690_1000005037 301
30 3300005340 Ga0070689_100026653 Ga0070689_1000266532 301
31 3300005435 Ga0070714_100003088 Ga0070714_1000030883 301
32 3300005466 Ga0070685_10165298 Ga0070685_101652981 301
33 3300005530 Ga0070679_100028951 Ga0070679_1000289513 301
34 3300005530 Ga0070679_100089774 Ga0070679_1000897742 301
35 3300005563 Ga0068855_100014604 Ga0068855_1000146045 301
36 3300005563 Ga0068855_100050512 Ga0068855_1000505125 301
37 3300005563 Ga0068855_100106682 Ga0068855_1001066821 301
38 3300005563 Ga0068855_100289725 Ga0068855_1002897252 301
39 3300005614 Ga0068856_100000258 Ga0068856_10000025831 301
40 3300005614 Ga0068856_100000426 Ga0068856_10000042619 301
41 3300005617 Ga0068859_100047305 Ga0068859_1000473055 301
42 3300005841 Ga0068863_100045984 Ga0068863_1000459842 301
43 3300005841 Ga0068863_100362092 Ga0068863_1003620923 301
44 3300005841 Ga0068863_100560050 Ga0068863_1005600502 301
45 3300005841 Ga0068863_100687770 Ga0068863_1006877701 301
46 3300005843 Ga0068860_100002188 Ga0068860_1000021886 301
47 3300006173 Ga0070716_100058138 Ga0070716_1000581383 301
48 3300006852 Ga0075433_10009708 Ga0075433_100097088 301
49 3300006871 Ga0075434_100513102 Ga0075434_1005131022 301
50 3300006931 Ga0097620_100047306 Ga0097620_1000473065 301
51 3300007265 Ga0099794_10001447 Ga0099794_100014476 301
52 3300009093 Ga0105240_10000170 Ga0105240_100001705 301
53 3300009093 Ga0105240_10522022 Ga0105240_105220222 301
54 3300009147 Ga0114129_10201857 Ga0114129_102018574 301
55 3300009551 Ga0105238_10004726 Ga0105238_100047264 301
56 3300009551 Ga0105238_10124476 Ga0105238_101244762 301
57 3300010375 Ga0105239_10007389 Ga0105239_100073894 301
58 3300011119 Ga0105246_10193035 Ga0105246_101930352 301
59 3300013307 Ga0157372_10115971 Ga0157372_101159712 301
60 3300014325 Ga0163163_10020026 Ga0163163_100200263 301
61 3300025912 Ga0207707_10348529 Ga0207707_103485291 301
62 3300025913 Ga0207695_10000208 Ga0207695_10000208134 301
63 3300025913 Ga0207695_10396053 Ga0207695_103960532 301
64 3300025921 Ga0207652_10067426 Ga0207652_100674262 301
65 3300025924 Ga0207694_10004195 Ga0207694_100041956 301
66 3300025929 Ga0207664_10002249 Ga0207664_100022493 301
67 3300025939 Ga0207665_10136538 Ga0207665_101365382 301
68 3300025944 Ga0207661_10251890 Ga0207661_102518902 301
69 3300025949 Ga0207667_10042510 Ga0207667_100425102 301
70 3300025949 Ga0207667_10244889 Ga0207667_102448892 301
71 3300025961 Ga0207712_10221497 Ga0207712_102214971 301
72 3300026078 Ga0207702_10000850 Ga0207702_100008507 301
73 3300026088 Ga0207641_10665707 Ga0207641_106657071 301
74 3300028381 Ga0268264_10004568 Ga0268264_100045686 301
75 3300028381 Ga0268264_10161658 Ga0268264_101616581 301
76 3300028556 Ga0265337_1000498 Ga0265337_10004988 301
77 3300028653 Ga0265323_10000530 Ga0265323_1000053012 301
78 3300028654 Ga0265322_10023497 Ga0265322_100234972 301
79 3300028666 Ga0265336_10002484 Ga0265336_100024844 301
80 3300028800 Ga0265338_10000487 Ga0265338_1000048760 301
81 3300028800 Ga0265338_10000828 Ga0265338_100008285 301
82 3300028800 Ga0265338_10002260 Ga0265338_1000226012 301
83 3300028800 Ga0265338_10048180 Ga0265338_100481802 301
84 3300028800 Ga0265338_10112046 Ga0265338_101120462 301
85 3300029957 Ga0265324_10023513 Ga0265324_100235132 301
86 3300031239 Ga0265328_10038537 Ga0265328_100385372 301
87 3300031240 Ga0265320_10003114 Ga0265320_100031143 301
88 3300031240 Ga0265320_10061433 Ga0265320_100614332 301
89 3300031250 Ga0265331_10027454 Ga0265331_100274543 301
90 3300031251 Ga0265327_10000379 Ga0265327_1000037960 301
91 3300031251 Ga0265327_10000818 Ga0265327_1000081818 301
92 3300031251 Ga0265327_10008906 Ga0265327_100089062 301
93 3300031251 Ga0265327_10074717 Ga0265327_100747172 301
94 3300031344 Ga0265316_10006474 Ga0265316_100064745 301
95 3300031344 Ga0265316_10029904 Ga0265316_100299044 301
96 3300031344 Ga0265316_10353284 Ga0265316_103532841 301
97 3300031548 Ga0307408_100003210 Ga0307408_1000032102 301
98 3300031901 Ga0307406_10002244 Ga0307406_100022447 301
99 3300031995 Ga0307409_100001188 Ga0307409_10000118810 301
100 3300032004 Ga0307414_10022766 Ga0307414_100227663 301
101 3300032133 Ga0316583_10041469 Ga0316583_100414692 301
102 3300037068 Ga0373925_0043228 Ga0373925_0043228_49_978 301
103 3300037068 Ga0373925_0115060 Ga0373925_0115060_664_1608 301
104 3300039110 Ga0400487_09616 Ga0400487_09616_171_1082 301
105 3300042876 Ga0451577_0063318 Ga0451577_0063318_2248_3183 301
106 3300044673 Ga0453683_0000551 Ga0453683_0000551_25177_26148 301
107 3300044712 Ga0453684_0211815 Ga0453684_0211815_77_1000 301
108 3300045051 Ga0451576_0249896 Ga0451576_0249896_581_1498 301
109 3300045051 Ga0451576_0253017 Ga0451576_0253017_369_1292 301
110 3300046476 Ga0495662_0007269 Ga0495662_0007269_3182_4150 301
111 3300046514 Ga0495618_0007732 Ga0495618_0007732_3627_4595 301
112 3300046516 Ga0495628_0000135 Ga0495628_0000135_47060_48028 301
113 3300046517 Ga0495630_0010483 Ga0495630_0010483_2287_3255 301
114 3300046517 Ga0495630_0044588 Ga0495630_0044588_398_1327 301
115 3300046526 Ga0495666_0003568 Ga0495666_0003568_1539_2507 301
116 3300046535 Ga0495586_0000494 Ga0495586_0000494_11849_12817 301
117 3300046535 Ga0495586_0069215 Ga0495586_0069215_873_1796 301
118 3300046543 Ga0495645_0005905 Ga0495645_0005905_6108_7076 301
119 3300047319 Ga0495674_0039052 Ga0495674_0039052_2659_3627 301
120 3300048928 Ga0496125_0133290 Ga0496125_0133290_256_1170 301
121 3300049568 Ga0501031_0000026 Ga0501031_0000026_53635_54555 301
122 3300049568 Ga0501031_0014336 Ga0501031_0014336_1374_2312 301
123 3300049569 Ga0501032_0000335 Ga0501032_0000335_38072_39013 301
124 3300049569 Ga0501032_0004402 Ga0501032_0004402_5199_6119 301
125 3300049569 Ga0501032_0017317 Ga0501032_0017317_4079_5029 301
126 3300049570 Ga0501033_0001186 Ga0501033_0001186_2296_3237 301
127 3300049570 Ga0501033_0001874 Ga0501033_0001874_11306_12226 301
128 3300049570 Ga0501033_0016913 Ga0501033_0016913_3444_4394 301
129 3300049571 Ga0501034_0131003 Ga0501034_0131003_1540_2463 301
130 3300049572 Ga0501036_0051876 Ga0501036_0051876_237_1178 301
131 3300049573 Ga0501037_0046879 Ga0501037_0046879_2198_3139 301
132 3300049574 Ga0501038_0008799 Ga0501038_0008799_2289_3230 301
133 3300049575 Ga0501039_0042845 Ga0501039_0042845_2030_2971 301
134 3300049575 Ga0501039_0110194 Ga0501039_0110194_514_1437 301
135 3300049578 Ga0501042_0065223 Ga0501042_0065223_520_1461 301
136 3300049579 Ga0501043_0039597 Ga0501043_0039597_1999_2949 301
137 3300049579 Ga0501043_0060095 Ga0501043_0060095_1134_2057 301
138 3300049579 Ga0501043_0117202 Ga0501043_0117202_377_1315 301
139 3300049580 Ga0501046_0000465 Ga0501046_0000465_2597_3535 301
140 3300049581 Ga0501047_0010708 Ga0501047_0010708_4180_5118 301
141 3300049584 Ga0501068_0050999 Ga0501068_0050999_1418_2359 301
142 3300049589 Ga0501073_0135829 Ga0501073_0135829_641_1582 301
143 3300049665 Ga0501227_002294 Ga0501227_002294_1969_2883 301
144 3300049822 Ga0501035_0011292 Ga0501035_0011292_6040_6960 301
145 3300049823 Ga0501044_0000135 Ga0501044_0000135_74751_75671 301
146 3300049823 Ga0501044_0040994 Ga0501044_0040994_2656_3606 301
147 3300049823 Ga0501044_0231364 Ga0501044_0231364_822_1757 301
148 3300050507 nmdc:mga05p37_6055_c1 nmdc:mga05p37_6055_c1_2574_3536 301
149 3300050512 nmdc:mga0n895_9695_c1 nmdc:mga0n895_9695_c1_1937_2899 301
150 3300053136 Ga0500559_0000351 Ga0500559_0000351_352_1284 301

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

64

296

0.96

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

65

305

0.85

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

65

356

0.85

PF04321

RmlD_sub_bind

RmlD substrate binding domain

62

363

0.82

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

64

334

0.81

PF07993

NAD_binding_4

Male sterility protein

112

279

0.76

PF13460

NAD_binding_10

NAD(P)H-binding

68

212

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
6dnt-assembly1.cif.gz_A-2 udp-n-acetylglucosamine 4-epimerase from methanobrevibacter ruminantium m1 in complex with udp-n-acetylmuramic acid 0.9647 2 300
6dnt-assembly1.cif.gz_A-2 udp-n-acetylglucosamine 4-epimerase from methanobrevibacter ruminantium m1 in complex with udp-n-acetylmuramic acid 0.9553 2 300
6wja-assembly1.cif.gz_A udp-glcnac c4-epimerase mutant s121a/y146f from pseudomonas protegens in complex with udp-galnac 0.9521 1 299
6wjb-assembly1.cif.gz_A udp-glcnac c4-epimerase from pseudomonas protegens in complex with nad and udp-glcnac 0.9518 1 299
1sb8-assembly1.cif.gz_A crystal structure of pseudomonas aeruginosa udp-n-acetylglucosamine 4-epimerase complexed with udp-n-acetylgalactosamine 0.9503 2 300
ID Description Score Start End Superfamily
af_Q2G289_4_319_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9733 2 299 3.40.50.720
af_Q2G289_4_319_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9607 2 299 3.40.50.720
3ru7A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9606 2 166 3.40.50.720
6dntA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9579 2 235 3.40.50.720
4zrnB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9408 1 235 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2I0P2Z9-F1-model_v4 GDP-mannose 4,6-dehydratase 0.9843 1 300
AF-A0A3M2AYT5-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9841 2 300
AF-A0A2M7F9C1-F1-model_v4 NAD-dependent epimerase/dehydratase domain-containing protein 0.984 1 300
AF-A0A7V2XJE6-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9831 2 300
AF-A0A2G6J3U6-F1-model_v4 LPS biosynthesis protein WbpP 0.9824 1 300

Feature Viewer

pLDDT pTM Quality
94.82 0.92 High
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Predicted Structure (AlphaFold2)

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