F206559

General Info

Members Datasets Scaffolds Average Seq Length
149 116 298 310

Family's Representative Sequence

Representative Sequence 3300035118|Ga0373954_0018618|Ga0373954_0018618_1377_2393
Length 338
Sequence LQNIRRSGLSDSGVKRRLSDSRRLPPLNAIRAFEAAARKGGFQAAGVELNVSANAVGRLVKVLEDWLGVALFRRLPRGVVVTEAGRGYLSRVENLLDQLAEATADLGRIESSKVLTVSAGPSLAARWLIPRLGGLVERHRELTVRVLATPSLADFEREEVDVAIRHGCGTYEGLRDDLLMREDFFPVCSPTLLARGPRLQEPADLSQHILLHQQNVLTRNERDQSVDQLDWASWLAKIGASGIDAQRGLYFSFSHMTLQAAAAGQGVALASSAYLGDDLETGRLVRPFGDLSVRGPDGFFIVCPHLTADREKVVVFRSWALKEVASGGKPSEFEAPIL

Samples

Sample ID Description Type Environment
1 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
5 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
6 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
7 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
8 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
9 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
10 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
11 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
12 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
13 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
14 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
15 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
16 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
17 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
18 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
19 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
21 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
22 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
23 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
28 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
29 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
30 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
31 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
32 3300033442 Root nodule microbial communities collected in Santa Monica, California, United States - Edamame nodules 1 Metagenome Nodule
33 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
34 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
35 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
36 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
37 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
38 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
39 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
40 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
41 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
42 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
43 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
44 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
45 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
46 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
47 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
48 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
49 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
50 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
51 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
52 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
53 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
54 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
55 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
56 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
57 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
58 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
59 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
60 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
61 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
62 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
63 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
65 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
69 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
74 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
75 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
76 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
77 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
78 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
79 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
80 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
81 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
83 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
84 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
85 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
86 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
87 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
88 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
89 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
90 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
91 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
92 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
93 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
94 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
95 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
96 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
97 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
98 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
99 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
100 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
101 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
102 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
103 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
104 2513237137 Bradyrhizobium elkanii USDA 94 Isolate Nodule
105 2524023228 Bradyrhizobium sp. Th.b2 Isolate Nodule
106 2791355197 Bradyrhizobium sp. C9 Isolate Nodule
107 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
108 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
109 2885270888 Paraburkholderia sp. UYCPa14C Isolate Unclassified
110 2885374607 Bradyrhizobium sp. NAS96.2 Isolate Unclassified
111 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
112 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
113 2904699407
114 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
115 2908756301 Bradyrhizobium ivorense CI-41S Isolate Nodule
116 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.89
Metatranscriptomes 0
Isolates 8.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.79
Nodule 5.37
Rhizoplane 2.01
Rhizosphere 67.11
Stem 0
Stem Tuber 0
Unclassified 21.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0373954_0018618 3300035118 Unclassified 3128
2 rootH1_10148748 3300003316 Bacteria 4153
3 Ga0065714_10101881 3300005288 Bacteria 1633
4 Ga0070711_100156522 3300005439 Bacteria 1723
5 Ga0070694_100132213 3300005444 Bacteria 1804
6 Ga0070698_100100939 3300005471 Bacteria 2858
7 Ga0070665_100423952 3300005548 Bacteria 1339
8 Ga0070704_100040590 3300005549 Bacteria 3205
9 Ga0068854_100076783 3300005578 Bacteria 2456
10 Ga0081455_10027844 3300005937 Bacteria 5173
11 Ga0075365_10038261 3300006038 Bacteria 3117
12 Ga0075365_10097769 3300006038 Bacteria 2007
13 Ga0075365_10098991 3300006038 Unclassified 1995
14 Ga0075365_10101584 3300006038 Bacteria 1969
15 Ga0075364_10004482 3300006051 Bacteria 8045
16 Ga0075364_10018503 3300006051 Bacteria 4363
17 Ga0075362_10106177 3300006177 Unclassified 1318
18 Ga0075367_10059405 3300006178 Bacteria 2277
19 Ga0075369_10000033 3300006186 Bacteria 36877
20 Ga0075433_10132485 3300006852 Bacteria 2215
21 Ga0099794_10043555 3300007265 Bacteria 2143
22 Ga0105240_10150682 3300009093 Bacteria 2770
23 Ga0114129_10063967 3300009147 Bacteria 5134
24 Ga0099796_10001002 3300010159 Bacteria 5327
25 Ga0105239_10105046 3300010375 Bacteria 3128
26 Ga0213872_10010390 3300021361 Bacteria 4434
27 Ga0207645_10071933 3300025907 Bacteria 2213
28 Ga0207695_10047508 3300025913 Bacteria 4542
29 Ga0207695_10155363 3300025913 Bacteria 2223
30 Ga0207668_10026426 3300025972 Bacteria 3769
31 Ga0207668_10264196 3300025972 Bacteria 1404
32 Ga0207658_10409228 3300025986 Unclassified 1194
33 Ga0265327_10015475 3300031251 Bacteria 4919
34 Ga0307513_10193490 3300031456 Bacteria 1882
35 Ga0307508_10202650 3300031616 Unclassified 1585
36 Ga0307507_10080455 3300033179 Bacteria 2873
37 Ga0307510_10063066 3300033180 Unclassified 3779
38 Ga0315911_1000018 3300033442 Bacteria 152089
39 Ga0373923_0067871 3300035111 Unclassified 1526
40 Ga0373954_0035388 3300035118 Unclassified 2316
41 Ga0373935_0211984 3300035692 Unclassified 1343
42 Ga0373935_0311170 3300035692 Bacteria 1115
43 Ga0373947_0052512 3300035725 Unclassified 2455
44 Ga0373925_0081501 3300037068 Bacteria 2461
45 Ga0373925_0131925 3300037068 Unclassified 1949
46 Ga0436361_0496423 3300039447 Bacteria 5304
47 Ga0436361_0994138 3300039447 Bacteria 15010
48 Ga0466965_0125177 3300044683 Bacteria 1329
49 Ga0495592_0068085 3300046454 Bacteria 2600
50 Ga0495603_0026879 3300046455 Bacteria 3476
51 Ga0495629_0052135 3300046459 Bacteria 2863
52 Ga0495662_0034133 3300046476 Bacteria 2457
53 Ga0495618_0033393 3300046514 Bacteria 3226
54 Ga0495628_0291657 3300046516 Unclassified 1209
55 Ga0495665_0030268 3300046531 Unclassified 2897
56 Ga0495640_0023287 3300046533 Bacteria 4515
57 Ga0495586_0079262 3300046535 Unclassified 1803
58 Ga0495645_0004431 3300046543 Bacteria 9588
59 Ga0495599_0101754 3300046678 Unclassified 1791
60 Ga0495646_0076702 3300046680 Unclassified 1957
61 Ga0495613_0141076 3300046689 Unclassified 1722
62 Ga0495600_0069204 3300046809 Unclassified 2306
63 Ga0495581_0130748 3300047315 Unclassified 1463
64 Ga0495674_0033012 3300047319 Bacteria 4692
65 Ga0495674_0142089 3300047319 Unclassified 2017
66 Ga0495675_0087496 3300047444 Unclassified 1957
67 Ga0495684_0013672 3300047471 Bacteria 6251
68 Ga0495686_0184853 3300047472 Unclassified 1205
69 Ga0495593_0033460 3300047673 Bacteria 2799
70 Ga0495602_0171681 3300048088 Unclassified 1682
71 Ga0496102_0142398 3300048905 Bacteria 2249
72 Ga0496102_0306190 3300048905 Bacteria 1497
73 Ga0496113_0284804 3300048916 Bacteria 1322
74 Ga0496121_0026041 3300048924 Bacteria 5529
75 Ga0501032_0023939 3300049569 Bacteria 4217
76 Ga0501032_0070639 3300049569 Bacteria 2328
77 Ga0501033_0014015 3300049570 Bacteria 6098
78 Ga0501034_0002244 3300049571 Bacteria 23790
79 Ga0501036_0015910 3300049572 Bacteria 6283
80 Ga0501036_0075357 3300049572 Bacteria 2853
81 Ga0501037_0040999 3300049573 Bacteria 3406
82 Ga0501038_0013813 3300049574 Bacteria 7358
83 Ga0501038_0022797 3300049574 Bacteria 5604
84 Ga0501039_0001182 3300049575 Bacteria 19129
85 Ga0501043_0037938 3300049579 Bacteria 3790
86 Ga0501046_0001892 3300049580 Bacteria 19894
87 Ga0501046_0011549 3300049580 Bacteria 7551
88 Ga0501048_0031452 3300049582 Bacteria 3839
89 Ga0501067_0009099 3300049583 Bacteria 5501
90 Ga0501069_0005105 3300049585 Bacteria 6815
91 Ga0501069_0020025 3300049585 Bacteria 3622
92 Ga0501070_0001038 3300049586 Bacteria 25004
93 Ga0501070_0020959 3300049586 Bacteria 5483
94 Ga0501073_0002822 3300049589 Bacteria 13009
95 Ga0501073_0010290 3300049589 Bacteria 6867
96 Ga0501073_0124898 3300049589 Bacteria 1784
97 Ga0501074_0004111 3300049590 Bacteria 10384
98 Ga0501074_0010006 3300049590 Bacteria 6882
99 Ga0501074_0061447 3300049590 Bacteria 2706
100 Ga0501079_0066850 3300049741 Unclassified 2774
101 Ga0501079_0125806 3300049741 Bacteria 1994
102 Ga0501080_0010124 3300049742 Bacteria 8622
103 Ga0501080_0032051 3300049742 Bacteria 4899
104 Ga0501083_0057127 3300049744 Bacteria 2613
105 Ga0501035_0003143 3300049822 Bacteria 15862
106 Ga0501035_0063863 3300049822 Bacteria 3273
107 Ga0501044_0002876 3300049823 Bacteria 19590
108 Ga0501044_0044020 3300049823 Bacteria 4635
109 Ga0501044_0137509 3300049823 Bacteria 2433
110 nmdc:mga00v17_1001_c1 3300050491 Bacteria 15114
111 nmdc:mga00v17_27149_c1 3300050491 Bacteria 3340
112 nmdc:mga00v17_8286_c1 3300050491 Bacteria 5589
113 nmdc:mga0yw44_141342_c1 3300050492 Bacteria 1565
114 nmdc:mga0yw44_15179_c1 3300050492 Bacteria 4116
115 nmdc:mga0yw44_42356_c1 3300050492 Bacteria 2715
116 nmdc:mga06z11_21547_c1 3300050494 Bacteria 2996
117 nmdc:mga06z11_45257_c1 3300050494 Unclassified 2224
118 nmdc:mga05p37_87924_c1 3300050507 Bacteria 3830
119 nmdc:mga06r32_452083_c1 3300050510 Unclassified 1264
120 nmdc:mga0a205_159083_c1 3300050515 Bacteria 2156
121 nmdc:mga0sz30_56_c1 3300050516 Bacteria 42210
122 Ga0495601_0122336 3300053077 Unclassified 1691
123 Ga0495595_0024154 3300053084 Unclassified 2682
124 Ga0500644_0110345 3300053088 Unclassified 1059
125 Ga0500554_001526 3300053102 Bacteria 4472
126 Ga0500595_010019 3300053119 Bacteria 3789
127 Ga0500642_0017032 3300053130 Bacteria 2775
128 Ga0500590_005411 3300053148 Bacteria 6144
129 Ga0500603_000247 3300053150 Bacteria 14210
130 Ga0500619_000141 3300053154 Bacteria 17739
131 Ga0500634_0064337 3300053161 Unclassified 1938
132 Ga0500637_0015519 3300053178 Bacteria 4038
133 Ga0500611_025175 3300053727 Unclassified 1177
134 Ga0501084_0394080 3300054114 Bacteria 1170
135 Ga0501084_0472886 3300054114 Unclassified 1059
136 Ga0501082_0005528 3300060353 Bacteria 10969
137 2513860258 2513237137 Bacteria 9558895
138 2524536518 2524023228 Bacteria 10118060
139 2793073275 2791355197 Bacteria 8420563
140 2883292463 2883291878 Bacteria 5894118
141 2883355451 2883354860 Bacteria 5865246
142 2885275776 2885270888 Bacteria 9831543
143 2885376025 2885374607 Bacteria 8927485
144 2903751594 2903748898 Bacteria 9972761
145 2904692481 2904690495 Bacteria 9412302
146 2904709059
147 2908747806 2908739725 Bacteria 8628932
148 2908757217 2908756301 Bacteria 8864324
149 3003669575 3003665799 Bacteria 7279786
150 Ga0373954_0018618
151 rootH1_10148748
152 Ga0065714_10101881
153 Ga0070711_100156522
154 Ga0070694_100132213
155 Ga0070698_100100939
156 Ga0070665_100423952
157 Ga0070704_100040590
158 Ga0068854_100076783
159 Ga0081455_10027844
160 Ga0075365_10038261
161 Ga0075365_10097769
162 Ga0075365_10098991
163 Ga0075365_10101584
164 Ga0075364_10004482
165 Ga0075364_10018503
166 Ga0075362_10106177
167 Ga0075367_10059405
168 Ga0075369_10000033
169 Ga0075433_10132485
170 Ga0099794_10043555
171 Ga0105240_10150682
172 Ga0114129_10063967
173 Ga0099796_10001002
174 Ga0105239_10105046
175 Ga0213872_10010390
176 Ga0207645_10071933
177 Ga0207695_10047508
178 Ga0207695_10155363
179 Ga0207668_10026426
180 Ga0207668_10264196
181 Ga0207658_10409228
182 Ga0265327_10015475
183 Ga0307513_10193490
184 Ga0307508_10202650
185 Ga0307507_10080455
186 Ga0307510_10063066
187 Ga0315911_1000018
188 Ga0373923_0067871
189 Ga0373954_0035388
190 Ga0373935_0211984
191 Ga0373935_0311170
192 Ga0373947_0052512
193 Ga0373925_0081501
194 Ga0373925_0131925
195 Ga0436361_0496423
196 Ga0436361_0994138
197 Ga0466965_0125177
198 Ga0495592_0068085
199 Ga0495603_0026879
200 Ga0495629_0052135
201 Ga0495662_0034133
202 Ga0495618_0033393
203 Ga0495628_0291657
204 Ga0495665_0030268
205 Ga0495640_0023287
206 Ga0495586_0079262
207 Ga0495645_0004431
208 Ga0495599_0101754
209 Ga0495646_0076702
210 Ga0495613_0141076
211 Ga0495600_0069204
212 Ga0495581_0130748
213 Ga0495674_0033012
214 Ga0495674_0142089
215 Ga0495675_0087496
216 Ga0495684_0013672
217 Ga0495686_0184853
218 Ga0495593_0033460
219 Ga0495602_0171681
220 Ga0496102_0142398
221 Ga0496102_0306190
222 Ga0496113_0284804
223 Ga0496121_0026041
224 Ga0501032_0023939
225 Ga0501032_0070639
226 Ga0501033_0014015
227 Ga0501034_0002244
228 Ga0501036_0015910
229 Ga0501036_0075357
230 Ga0501037_0040999
231 Ga0501038_0013813
232 Ga0501038_0022797
233 Ga0501039_0001182
234 Ga0501043_0037938
235 Ga0501046_0001892
236 Ga0501046_0011549
237 Ga0501048_0031452
238 Ga0501067_0009099
239 Ga0501069_0005105
240 Ga0501069_0020025
241 Ga0501070_0001038
242 Ga0501070_0020959
243 Ga0501073_0002822
244 Ga0501073_0010290
245 Ga0501073_0124898
246 Ga0501074_0004111
247 Ga0501074_0010006
248 Ga0501074_0061447
249 Ga0501079_0066850
250 Ga0501079_0125806
251 Ga0501080_0010124
252 Ga0501080_0032051
253 Ga0501083_0057127
254 Ga0501035_0003143
255 Ga0501035_0063863
256 Ga0501044_0002876
257 Ga0501044_0044020
258 Ga0501044_0137509
259 nmdc:mga00v17_1001_c1
260 nmdc:mga00v17_27149_c1
261 nmdc:mga00v17_8286_c1
262 nmdc:mga0yw44_141342_c1
263 nmdc:mga0yw44_15179_c1
264 nmdc:mga0yw44_42356_c1
265 nmdc:mga06z11_21547_c1
266 nmdc:mga06z11_45257_c1
267 nmdc:mga05p37_87924_c1
268 nmdc:mga06r32_452083_c1
269 nmdc:mga0a205_159083_c1
270 nmdc:mga0sz30_56_c1
271 Ga0495601_0122336
272 Ga0495595_0024154
273 Ga0500644_0110345
274 Ga0500554_001526
275 Ga0500595_010019
276 Ga0500642_0017032
277 Ga0500590_005411
278 Ga0500603_000247
279 Ga0500619_000141
280 Ga0500634_0064337
281 Ga0500637_0015519
282 Ga0500611_025175
283 Ga0501084_0394080
284 Ga0501084_0472886
285 Ga0501082_0005528
286 2513860258
287 2524536518
288 2793073275
289 2883292463
290 2883355451
291 2885275776
292 2885376025
293 2903751594
294 2904692481
295 2904709059
296 2908747806
297 2908757217
298 3003669575

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

27

86

0.98

PF03466

LysR_substrate

LysR substrate binding domain

108

325

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
7trv-assembly1.cif.gz_B crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.9163 8 91
4ihs-assembly1.cif.gz_A crystal structure of benm_dbd/catb site 1 dna complex 0.8743 10 97
5z4y-assembly1.cif.gz_B crystal structure of pacysb ntd domain with space group p4 0.8734 11 94
4ihs-assembly3.cif.gz_C crystal structure of benm_dbd/catb site 1 dna complex 0.8731 10 97
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.8702 10 94
ID Description Score Start End Superfamily
af_Q57083_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.976 11 89 1.10.10.10
af_P0A9F6_3_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9615 7 92 1.10.10.10
af_P52696_4_93_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.95 11 97 1.10.10.10
af_P52044_6_90_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.949 14 95 1.10.10.10
af_P75836_3_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9421 10 94 1.10.10.10
ID Description Score Start End GO Terms
AF-X5PYW1-F1-model_v4 LysR substrate-binding domain-containing protein 0.9212 103 312 GO:0003700
GO:0006351
GO:0043565
AF-A0A1Q5IPR2-F1-model_v4 Transcriptional regulator 0.9001 10 95 GO:0000976
GO:0003700
AF-A0A3T1DZY6-F1-model_v4 deleted 0.891 100 312
AF-A0A7G6RG65-F1-model_v4 deleted 0.8896 6 89
AF-A0A7M3DW54-F1-model_v4 Guanylate cyclase domain-containing protein 0.8893 95 306 GO:0003700
GO:0004016
GO:0006351
GO:0009190
GO:0035556
GO:0043565

Map