F202686

General Info

Members Datasets Scaffolds Average Seq Length
148 111 133 155

Family's Representative Sequence

Representative Sequence 3300005617|Ga0068859_100003416|Ga0068859_10000341615
Length 182
Sequence MSEETGGASAAQVSPAGPPRLTEPPGPARDLAAMQLALAEAVLAGEAGDVPIGAVVIAADGTVLGRGHNIREAAADPTGHAEIVALRAAAATTGAWRLTGATLVVTLEPCTMCAGALVLARVARLVYGAIDEKAGAVGSLWDVVRDRRLNHRPEVISGTAAYDCAALLNTFFATRRNPRTPS

Samples

Sample ID Description Type Environment
1 2506783011 Frankia datiscae Dg1 Isolate Nodule
2 2643221604 Nocardioides sp. Root190 Isolate Unclassified
3 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
4 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
5 2738541305 Nocardioides sp. CF167 Isolate Unclassified
6 2773857933 Frankia sp. BMG5.30 Isolate Nodule
7 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
8 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
9 2867475112 Streptomyces sp. TM32 Isolate Unclassified
10 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
11 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
12 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
13 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
14 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
15 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
16 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
17 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
18 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
19 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
22 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
23 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
28 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
29 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
30 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
31 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
34 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
35 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
43 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
44 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
45 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
46 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
47 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
63 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
64 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
65 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
66 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
67 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
68 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
69 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
70 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
71 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
72 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
73 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
74 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
75 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
76 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
77 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
78 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
79 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
80 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
81 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
82 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
83 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
84 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
85 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
86 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
87 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
88 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
89 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
90 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
91 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
92 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
93 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
94 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
95 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
100 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
101 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
102 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
103 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
104 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
105 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
106 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
107 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
108 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
109 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
110 8054920844 Frankia tisae Agncl-8 Isolate Nodule
111 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 88.51
Metatranscriptomes 1.35
Isolates 10.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.16
Nodule 2.7
Rhizoplane 2.7
Rhizosphere 70.95
Stem 0
Stem Tuber 0
Unclassified 11.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10000553 3300005327 Bacteria 32327
2 Ga0070683_100786305 3300005329 Bacteria 912
3 Ga0070689_101107311 3300005340 Bacteria 708
4 Ga0070687_100188520 3300005343 Bacteria 1241
5 Ga0070668_100206025 3300005347 Bacteria 1616
6 Ga0070671_100019253 3300005355 Bacteria 5554
7 Ga0070667_100006682 3300005367 Bacteria 9584
8 Ga0070714_100000461 3300005435 Bacteria 29627
9 Ga0070681_10625119 3300005458 Bacteria 992
10 Ga0070681_10907542 3300005458 Bacteria 799
11 Ga0070685_11114173 3300005466 Bacteria 597
12 Ga0070684_101108989 3300005535 Bacteria 744
13 Ga0068859_100003416 3300005617 Bacteria 16151
14 Ga0068863_100000362 3300005841 Bacteria 46270
15 Ga0068863_100016684 3300005841 Bacteria 7047
16 Ga0068858_100008991 3300005842 Bacteria 9557
17 Ga0068858_100009218 3300005842 Bacteria 9425
18 Ga0068860_100000129 3300005843 Bacteria 122623
19 Ga0081539_10004532 3300005985 Bacteria 15248
20 Ga0081539_10107727 3300005985 Bacteria 1409
21 Ga0075365_10179435 3300006038 Bacteria 1480
22 Ga0075368_10009098 3300006042 Bacteria 3567
23 Ga0075363_100014783 3300006048 Bacteria 3824
24 Ga0075363_100044711 3300006048 Bacteria 2347
25 Ga0075363_100316442 3300006048 Bacteria 908
26 Ga0075364_10007828 3300006051 Bacteria 6361
27 Ga0075364_10133583 3300006051 Bacteria 1666
28 Ga0075364_10460804 3300006051 Bacteria 869
29 Ga0097620_100003416 3300006931 Bacteria 16151
30 Ga0105250_10167469 3300009092 Bacteria 919
31 Ga0105247_10000034 3300009101 Bacteria 180271
32 Ga0105247_10036825 3300009101 Bacteria 2983
33 Ga0105247_10370072 3300009101 Bacteria 1013
34 Ga0105243_11489519 3300009148 Bacteria 700
35 Ga0105248_10001667 3300009177 Bacteria 24708
36 Ga0157373_10557033 3300013100 Bacteria 832
37 Ga0157371_10005195 3300013102 Bacteria 11067
38 Ga0157372_10118292 3300013307 Bacteria 3040
39 Ga0157372_10582942 3300013307 Bacteria 1304
40 Ga0157375_11167774 3300013308 Bacteria 902
41 Ga0163163_10031679 3300014325 Bacteria 5105
42 Ga0163163_10329285 3300014325 Bacteria 1582
43 Ga0157380_10048650 3300014326 Bacteria 3340
44 Ga0157379_10077886 3300014968 Bacteria 2969
45 Ga0157379_10510451 3300014968 Bacteria 1115
46 Ga0157376_11714485 3300014969 Bacteria 664
47 Ga0206354_10144763 3300020081 Bacteria 556
48 Ga0224712_10003194 3300022467 Bacteria 4208
49 Ga0207696_1117846 3300025711 Bacteria 717
50 Ga0207710_10000053 3300025900 Bacteria 180375
51 Ga0207710_10167015 3300025900 Bacteria 1074
52 Ga0207707_10781740 3300025912 Bacteria 796
53 Ga0207662_10730299 3300025918 Bacteria 695
54 Ga0207664_10000001 3300025929 Bacteria 724213
55 Ga0207664_10099597 3300025929 Bacteria 2399
56 Ga0207690_10693171 3300025932 Bacteria 837
57 Ga0207670_10509833 3300025936 Bacteria 978
58 Ga0207661_10931779 3300025944 Bacteria 800
59 Ga0207658_10002753 3300025986 Bacteria 12671
60 Ga0207703_10061390 3300026035 Bacteria 3077
61 Ga0207703_10069886 3300026035 Bacteria 2897
62 Ga0207641_10001632 3300026088 Bacteria 21867
63 Ga0207641_10027374 3300026088 Bacteria 4707
64 Ga0207675_100048054 3300026118 Bacteria 3983
65 Ga0209813_10098946 3300027866 Bacteria 990
66 Ga0268266_10000654 3300028379 Bacteria 46877
67 Ga0268264_10000196 3300028381 Bacteria 123687
68 Ga0307515_10000083 3300028794 Bacteria 222889
69 Ga0265340_10009931 3300031247 Bacteria 5101
70 Ga0307516_10005597 3300031730 Bacteria 14961
71 Ga0307405_10789313 3300031731 Bacteria 795
72 Ga0307413_10322975 3300031824 Bacteria 1180
73 Ga0307410_10250695 3300031852 Bacteria 1376
74 Ga0307410_10568145 3300031852 Bacteria 942
75 Ga0307406_10156951 3300031901 Bacteria 1631
76 Ga0307412_10072223 3300031911 Bacteria 2358
77 Ga0307412_10234606 3300031911 Bacteria 1415
78 Ga0307412_10867909 3300031911 Bacteria 788
79 Ga0307409_100199637 3300031995 Bacteria 1788
80 Ga0307409_100394579 3300031995 Bacteria 1320
81 Ga0307409_100462383 3300031995 Bacteria 1227
82 Ga0307409_101601680 3300031995 Bacteria 679
83 Ga0307416_100404156 3300032002 Bacteria 1404
84 Ga0307414_11995595 3300032004 Bacteria 542
85 Ga0307415_100026635 3300032126 Bacteria 3651
86 Ga0373951_0000139 3300035091 Bacteria 27302
87 Ga0395905_0046509 3300037471 Bacteria 4069
88 Ga0395905_1120650 3300037471 Bacteria 690
89 Ga0436364_0196979 3300037853 Bacteria 1065
90 Ga0395901_0106300 3300038443 Bacteria 2946
91 Ga0439448_0165244 3300042005 Bacteria 771
92 Ga0466972_0037505 3300044658 Bacteria 2370
93 Ga0466972_0082463 3300044658 Bacteria 1530
94 Ga0466965_0015523 3300044683 Bacteria 3618
95 Ga0466965_0024676 3300044683 Bacteria 2909
96 Ga0466968_0128192 3300044735 Bacteria 1153
97 Ga0466968_0164023 3300044735 Bacteria 1027
98 Ga0466970_0001993 3300044765 Bacteria 9878
99 Ga0466970_0457875 3300044765 Bacteria 732
100 Ga0466960_0130596 3300044901 Bacteria 1325
101 Ga0466960_0133055 3300044901 Bacteria 1315
102 Ga0466960_0439460 3300044901 Bacteria 757
103 Ga0466958_0364504 3300045836 Bacteria 931
104 Ga0466967_0073066 3300045976 Bacteria 3076
105 Ga0466967_0769900 3300045976 Bacteria 955
106 Ga0466967_1770918 3300045976 Bacteria 615
107 Ga0496103_0833036 3300048906 Bacteria 581
108 Ga0496106_0399465 3300048909 Bacteria 1105
109 Ga0496109_1031396 3300048912 Bacteria 760
110 Ga0496114_0376930 3300048917 Bacteria 1256
111 Ga0496118_0222279 3300048921 Bacteria 1098
112 Ga0496119_0012710 3300048922 Bacteria 6804
113 Ga0496119_0021786 3300048922 Bacteria 4615
114 Ga0496120_0010347 3300048923 Bacteria 6515
115 Ga0496121_0045985 3300048924 Bacteria 3742
116 Ga0496124_0464038 3300048927 Bacteria 860
117 Ga0501039_0120002 3300049575 Bacteria 2060
118 Ga0501041_0400275 3300049577 Bacteria 870
119 Ga0501042_0678625 3300049578 Bacteria 749
120 Ga0501046_0158190 3300049580 Bacteria 1706
121 Ga0501235_088235 3300049669 Bacteria 747
122 Ga0501080_0521877 3300049742 Bacteria 1060
123 Ga0501044_0452515 3300049823 Bacteria 1190
124 nmdc:mga03n38_74878_c1 3300050490 Bacteria 1576
125 nmdc:mga0yw44_290879_c1 3300050492 Bacteria 1093
126 nmdc:mga0yw44_461212_c1 3300050492 Bacteria 861
127 nmdc:mga0yw44_482344_c1 3300050492 Bacteria 841
128 nmdc:mga0yw44_99883_c1 3300050492 Bacteria 1847
129 nmdc:mga06z11_20312_c1 3300050494 Bacteria 3069
130 nmdc:mga06z11_49629_c1 3300050494 Bacteria 2142
131 nmdc:mga04h51_73081_c1 3300050495 Bacteria 1202
132 Ga0500554_031598 3300053102 Bacteria 1565
133 Ga0466962_0222109 3300061719 Bacteria 925

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031901 Ga0307406_10156951 Ga0307406_101569512 138
2 3300031995 Ga0307409_100462383 Ga0307409_1004623833 138
3 3300035091 Ga0373951_0000139 Ga0373951_0000139_15023_15469 138
4 3300005985 Ga0081539_10004532 Ga0081539_100045327 139
5 3300028794 Ga0307515_10000083 Ga0307515_1000008378 139
6 3300031730 Ga0307516_10005597 Ga0307516_100055973 139
7 3300031852 Ga0307410_10568145 Ga0307410_105681452 139
8 3300031995 Ga0307409_101601680 Ga0307409_1016016802 139
9 3300032002 Ga0307416_100404156 Ga0307416_1004041562 139
10 3300005985 Ga0081539_10107727 Ga0081539_101077272 141
11 3300031824 Ga0307413_10322975 Ga0307413_103229753 141
12 3300044901 Ga0466960_0133055 Ga0466960_0133055_159_614 142
13 3300045976 Ga0466967_0769900 Ga0466967_0769900_155_610 142
14 3300045976 Ga0466967_1770918 Ga0466967_1770918_74_544 142
15 3300049580 Ga0501046_0158190 Ga0501046_0158190_76_531 142
16 3300049742 Ga0501080_0521877 Ga0501080_0521877_570_1025 142
17 3300049823 Ga0501044_0452515 Ga0501044_0452515_405_860 142
18 iso_pu_bacteria 2867475112 2867477414 142
19 iso_pu_bacteria 3006493962 3006499298 142
20 iso_pu_bacteria 8023623736 8023624064 142
21 3300005329 Ga0070683_100786305 Ga0070683_1007863052 143
22 3300005347 Ga0070668_100206025 Ga0070668_1002060253 143
23 3300005355 Ga0070671_100019253 Ga0070671_1000192534 143
24 3300005367 Ga0070667_100006682 Ga0070667_10000668210 143
25 3300005435 Ga0070714_100000461 Ga0070714_10000046126 143
26 3300005841 Ga0068863_100016684 Ga0068863_1000166847 143
27 3300005842 Ga0068858_100009218 Ga0068858_10000921810 143
28 3300005843 Ga0068860_100000129 Ga0068860_100000129100 143
29 3300006051 Ga0075364_10007828 Ga0075364_100078282 143
30 3300009092 Ga0105250_10167469 Ga0105250_101674692 143
31 3300009101 Ga0105247_10036825 Ga0105247_100368257 143
32 3300020081 Ga0206354_10144763 Ga0206354_101447632 143
33 3300025711 Ga0207696_1117846 Ga0207696_11178462 143
34 3300025929 Ga0207664_10000001 Ga0207664_10000001265 143
35 3300025944 Ga0207661_10931779 Ga0207661_109317792 143
36 3300025986 Ga0207658_10002753 Ga0207658_100027537 143
37 3300026035 Ga0207703_10061390 Ga0207703_100613903 143
38 3300026088 Ga0207641_10001632 Ga0207641_1000163227 143
39 3300028379 Ga0268266_10000654 Ga0268266_1000065418 143
40 3300028381 Ga0268264_10000196 Ga0268264_1000019698 143
41 3300037471 Ga0395905_1120650 Ga0395905_1120650_181_642 143
42 3300038443 Ga0395901_0106300 Ga0395901_0106300_693_1151 143
43 3300042005 Ga0439448_0165244 Ga0439448_0165244_35_523 143
44 3300044658 Ga0466972_0037505 Ga0466972_0037505_768_1226 143
45 3300044683 Ga0466965_0015523 Ga0466965_0015523_102_560 143
46 3300044683 Ga0466965_0024676 Ga0466965_0024676_555_1016 143
47 3300044765 Ga0466970_0001993 Ga0466970_0001993_1762_2223 143
48 3300044901 Ga0466960_0130596 Ga0466960_0130596_373_831 143
49 3300044901 Ga0466960_0439460 Ga0466960_0439460_243_698 143
50 3300045976 Ga0466967_0073066 Ga0466967_0073066_2408_2869 143
51 3300049578 Ga0501042_0678625 Ga0501042_0678625_15_476 143
52 3300050492 nmdc:mga0yw44_461212_c1 nmdc:mga0yw44_461212_c1_246_701 143
53 3300050492 nmdc:mga0yw44_482344_c1 nmdc:mga0yw44_482344_c1_95_550 143
54 3300053102 Ga0500554_031598 Ga0500554_031598_624_1079 143
55 3300061719 Ga0466962_0222109 Ga0466962_0222109_112_573 143
56 3300005340 Ga0070689_101107311 Ga0070689_1011073112 144
57 3300005466 Ga0070685_11114173 Ga0070685_111141731 144
58 3300006048 Ga0075363_100316442 Ga0075363_1003164422 144
59 3300013308 Ga0157375_11167774 Ga0157375_111677742 144
60 3300014325 Ga0163163_10329285 Ga0163163_103292852 144
61 3300014969 Ga0157376_11714485 Ga0157376_117144851 144
62 3300025932 Ga0207690_10693171 Ga0207690_106931711 144
63 3300025936 Ga0207670_10509833 Ga0207670_105098332 144
64 3300048909 Ga0496106_0399465 Ga0496106_0399465_383_850 144
65 3300048912 Ga0496109_1031396 Ga0496109_1031396_126_584 144
66 3300049575 Ga0501039_0120002 Ga0501039_0120002_1401_1862 144
67 3300050492 nmdc:mga0yw44_290879_c1 nmdc:mga0yw44_290879_c1_436_894 144
68 iso_pu_bacteria 2643221604 2644032809 144
69 iso_pu_bacteria 2738541305 2738869611 144
70 3300005343 Ga0070687_100188520 Ga0070687_1001885202 145
71 3300013102 Ga0157371_10005195 Ga0157371_1000519510 145
72 3300014326 Ga0157380_10048650 Ga0157380_100486503 145
73 3300026118 Ga0207675_100048054 Ga0207675_1000480544 145
74 3300031731 Ga0307405_10789313 Ga0307405_107893132 145
75 3300031852 Ga0307410_10250695 Ga0307410_102506953 145
76 3300031911 Ga0307412_10234606 Ga0307412_102346063 145
77 3300031911 Ga0307412_10867909 Ga0307412_108679092 145
78 3300031995 Ga0307409_100199637 Ga0307409_1001996373 145
79 3300031995 Ga0307409_100394579 Ga0307409_1003945791 145
80 3300032004 Ga0307414_11995595 Ga0307414_119955951 145
81 3300032126 Ga0307415_100026635 Ga0307415_1000266355 145
82 3300044658 Ga0466972_0082463 Ga0466972_0082463_189_650 145
83 3300049577 Ga0501041_0400275 Ga0501041_0400275_281_736 145
84 3300049669 Ga0501235_088235 Ga0501235_088235_235_705 145
85 iso_pu_bacteria 2643221961 2645721670 145
86 iso_pu_bacteria 2643221962 2645724373 145
87 iso_pu_bacteria 2827628540 2827633285 145
88 3300005327 Ga0070658_10000553 Ga0070658_1000055334 146
89 3300005458 Ga0070681_10625119 Ga0070681_106251192 146
90 3300005458 Ga0070681_10907542 Ga0070681_109075422 146
91 3300005535 Ga0070684_101108989 Ga0070684_1011089892 146
92 3300005617 Ga0068859_100003416 Ga0068859_10000341615 146
93 3300005841 Ga0068863_100000362 Ga0068863_10000036237 146
94 3300005842 Ga0068858_100008991 Ga0068858_1000089913 146
95 3300006038 Ga0075365_10179435 Ga0075365_101794352 146
96 3300006042 Ga0075368_10009098 Ga0075368_100090985 146
97 3300006048 Ga0075363_100014783 Ga0075363_1000147833 146
98 3300006048 Ga0075363_100044711 Ga0075363_1000447113 146
99 3300006051 Ga0075364_10133583 Ga0075364_101335832 146
100 3300006051 Ga0075364_10460804 Ga0075364_104608042 146
101 3300006931 Ga0097620_100003416 Ga0097620_1000034163 146
102 3300009101 Ga0105247_10000034 Ga0105247_10000034131 146
103 3300009101 Ga0105247_10370072 Ga0105247_103700721 146
104 3300009148 Ga0105243_11489519 Ga0105243_114895192 146
105 3300009177 Ga0105248_10001667 Ga0105248_100016677 146
106 3300013100 Ga0157373_10557033 Ga0157373_105570333 146
107 3300013307 Ga0157372_10118292 Ga0157372_101182922 146
108 3300013307 Ga0157372_10582942 Ga0157372_105829422 146
109 3300014325 Ga0163163_10031679 Ga0163163_100316794 146
110 3300014968 Ga0157379_10077886 Ga0157379_100778862 146
111 3300014968 Ga0157379_10510451 Ga0157379_105104511 146
112 3300022467 Ga0224712_10003194 Ga0224712_100031945 146
113 3300025900 Ga0207710_10000053 Ga0207710_10000053132 146
114 3300025900 Ga0207710_10167015 Ga0207710_101670152 146
115 3300025912 Ga0207707_10781740 Ga0207707_107817402 146
116 3300025918 Ga0207662_10730299 Ga0207662_107302991 146
117 3300025929 Ga0207664_10099597 Ga0207664_100995975 146
118 3300026035 Ga0207703_10069886 Ga0207703_100698863 146
119 3300026088 Ga0207641_10027374 Ga0207641_100273743 146
120 3300027866 Ga0209813_10098946 Ga0209813_100989462 146
121 3300031247 Ga0265340_10009931 Ga0265340_100099314 146
122 3300031911 Ga0307412_10072223 Ga0307412_100722233 146
123 3300037471 Ga0395905_0046509 Ga0395905_0046509_975_1418 146
124 3300037853 Ga0436364_0196979 Ga0436364_0196979_483_938 146
125 3300044735 Ga0466968_0128192 Ga0466968_0128192_503_958 146
126 3300044735 Ga0466968_0164023 Ga0466968_0164023_472_936 146
127 3300044765 Ga0466970_0457875 Ga0466970_0457875_86_541 146
128 3300045836 Ga0466958_0364504 Ga0466958_0364504_125_571 146
129 3300048906 Ga0496103_0833036 Ga0496103_0833036_37_492 146
130 3300048917 Ga0496114_0376930 Ga0496114_0376930_235_702 146
131 3300048921 Ga0496118_0222279 Ga0496118_0222279_286_834 146
132 3300048922 Ga0496119_0012710 Ga0496119_0012710_2392_2850 146
133 3300048922 Ga0496119_0021786 Ga0496119_0021786_173_652 146
134 3300048923 Ga0496120_0010347 Ga0496120_0010347_2085_2543 146
135 3300048924 Ga0496121_0045985 Ga0496121_0045985_417_1196 146
136 3300048927 Ga0496124_0464038 Ga0496124_0464038_26_574 146
137 3300050490 nmdc:mga03n38_74878_c1 nmdc:mga03n38_74878_c1_526_996 146
138 3300050492 nmdc:mga0yw44_99883_c1 nmdc:mga0yw44_99883_c1_1035_1481 146
139 3300050494 nmdc:mga06z11_20312_c1 nmdc:mga06z11_20312_c1_15_485 146
140 3300050494 nmdc:mga06z11_49629_c1 nmdc:mga06z11_49629_c1_1173_1619 146
141 3300050495 nmdc:mga04h51_73081_c1 nmdc:mga04h51_73081_c1_114_584 146
142 iso_pu_bacteria 2506783011 2506868925 146
143 iso_pu_bacteria 2773857933 2774901660 146
144 iso_pu_bacteria 2857481737 2857482364 146
145 iso_pu_bacteria 2912757875 2912761154 146
146 iso_pu_bacteria 8025530807 8025534265 146
147 iso_pu_bacteria 8054920844 8054924634 146
148 iso_pu_bacteria 8055157932 8055162234 146

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14437

MafB19-deam

MafB19-like deaminase

28

176

0.97

PF00383

dCMP_cyt_deam_1

Cytidine and deoxycytidylate deaminase zinc-binding region

27

129

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5jfy-assembly1.cif.gz_B crystal structure of a plant cytidine deaminase 0.9531 2 96
5jfy-assembly2.cif.gz_D crystal structure of a plant cytidine deaminase 0.9509 2 95
8e2r-assembly1.cif.gz_A crystal structure of tadac-1.14 0.9438 2 139
8e2r-assembly1.cif.gz_B crystal structure of tadac-1.14 0.9438 1 140
3ocq-assembly1.cif.gz_A-2 crystal structure of trna-specific adenosine deaminase from salmonella enterica 0.9318 1 140
ID Description Score Start End Superfamily
af_A0A1D6PV52_1_75_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9849 38 96 3.40.140.10
af_A0A1D8PFE5_422_777_2.120.10.80 Mainly Beta;6 Propeller;Neuraminidase;Kelch-type beta propeller 0.9401 19 33 2.120.10.80
af_A0A0R0KFE2_25_145_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9335 4 84 3.40.140.10
af_F1QGS9_227_327_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.9304 19 33 2.60.40.10
1z3aA00 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9302 2 143 3.40.140.10
ID Description Score Start End GO Terms
AF-A0A2W4PJM2-F1-model_v4 tRNA-specific adenosine deaminase (EC 3.5.4.33) 0.9524 2 144 GO:0002100
GO:0008270
GO:0052717
AF-A0A451DBW7-F1-model_v4 tRNA-specific adenosine deaminase (EC 3.5.4.33) 0.9477 1 145 GO:0002100
GO:0008270
GO:0052717
AF-A0A523IGC4-F1-model_v4 tRNA-specific adenosine deaminase (EC 3.5.4.33) 0.9456 2 145 GO:0002100
GO:0008270
GO:0052717
AF-A0A0G0AY33-F1-model_v4 tRNA(adenine(34)) deaminase (EC 3.5.4.33) 0.9436 2 145 GO:0002100
GO:0008270
GO:0052717
AF-A0A6N7VR39-F1-model_v4 tRNA-specific adenosine deaminase (EC 3.5.4.33) 0.9416 1 145 GO:0002100
GO:0008270
GO:0052717

Feature Viewer

pLDDT pTM Quality
90.28 0.87 High
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Predicted Structure (AlphaFold2)

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