F198867

General Info

Members Datasets Scaffolds Average Seq Length
146 120 292 316

Family's Representative Sequence

Representative Sequence 3300053109|Ga0500569_022252|Ga0500569_022252_14_958
Length 303
Sequence MHTVAVLALDGVIPADLSIPVQVFEHARLPDGRPAYEVRVCAPWPQVDAGSFALRAPYGLDALAEADTIILPGTADPAGPVPEQVLDALRKAAADGTRIASICVGAFVLAATGLLDGLRATTHWQGTALLASLHPAIEVDPDVLYVDNGQFLTSAGAAAAFDLCLHMIRRDHGSAVAAGTGRQAQFIVHEPPAADGGATLEPLLRWMAANAARDLTLADLAAQARLSPRTLSRRFREQTGTTPLQWLHHARVRRAQHLLETTARPVERIAAEAGFGSPTAFRDRFRQIVGTSPQAYRRAFRIS

Samples

Sample ID Description Type Environment
1 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
6 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
7 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
8 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
9 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
10 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
11 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
12 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
13 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
14 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
15 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
16 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
21 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
22 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
23 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
24 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
25 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
26 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
27 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
28 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
29 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
30 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
31 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
32 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
33 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
34 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
35 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
36 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
37 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
38 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
39 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
40 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
41 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
42 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
43 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
44 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
45 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
46 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
47 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
48 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
49 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
50 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
51 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
52 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
53 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
54 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
55 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
56 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
57 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
58 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
59 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
60 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
61 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
62 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
63 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
64 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
65 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
66 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
67 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
68 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
69 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
70 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
71 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
80 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
81 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
82 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
84 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
85 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
86 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
87 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
88 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
89 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
90 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
91 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
92 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
93 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
94 3300053732 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 endosphere Metagenome Endosphere
95 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
96 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
97 2558860280 Kutzneria sp. 744 Isolate Unclassified
98 2643221548 Streptomyces sp. Root55 Isolate Unclassified
99 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
100 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
101 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
102 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
103 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
104 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
105 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
106 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
107 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
108 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
109 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
110 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
111 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
112 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
113 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
114 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
115 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
116 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
117 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
118 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
119 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
120 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.19
Metatranscriptomes 1.37
Isolates 16.44

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.22
Nodule 0.68
Rhizoplane 2.74
Rhizosphere 69.18
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500569_022252 3300053109 Bacteria 1686
2 JGI25406J46586_10001268 3300003203 Bacteria 11846
3 Ga0006562J51391_1161586 3300003578 Bacteria 4243
4 Ga0006562J51391_1161588 3300003578 Bacteria 3553
5 Ga0070714_100024665 3300005435 Bacteria 4955
6 Ga0070679_100336765 3300005530 Bacteria 1457
7 Ga0068853_100180668 3300005539 Bacteria 1913
8 Ga0070665_100051140 3300005548 Bacteria 4145
9 Ga0068855_100005658 3300005563 Bacteria 15259
10 Ga0081455_10000203 3300005937 Bacteria 75878
11 Ga0081539_10001033 3300005985 Bacteria 51337
12 Ga0070717_10067571 3300006028 Bacteria 2974
13 Ga0105240_10047730 3300009093 Bacteria 5417
14 Ga0105241_10000971 3300009174 Bacteria 21715
15 Ga0207654_10006519 3300025911 Bacteria 5873
16 Ga0207695_10002170 3300025913 Bacteria 29663
17 Ga0207671_10001257 3300025914 Bacteria 29874
18 Ga0207652_10302323 3300025921 Bacteria 1444
19 Ga0207694_10003814 3300025924 Bacteria 11925
20 Ga0207664_10000611 3300025929 Bacteria 24780
21 Ga0307517_10015610 3300028786 Bacteria 10074
22 Ga0307517_10081394 3300028786 Bacteria 2761
23 Ga0307515_10009596 3300028794 Bacteria 18692
24 Ga0307512_10004350 3300030522 Bacteria 15609
25 Ga0307512_10016714 3300030522 Bacteria 6763
26 Ga0307513_10049314 3300031456 Bacteria 4562
27 Ga0307509_10164956 3300031507 Bacteria 2106
28 Ga0307509_10220410 3300031507 Bacteria 1711
29 Ga0307508_10006769 3300031616 Bacteria 10736
30 Ga0307508_10173762 3300031616 Bacteria 1757
31 Ga0307514_10089175 3300031649 Bacteria 2254
32 Ga0307516_10001703 3300031730 Bacteria 30204
33 Ga0307405_10040342 3300031731 Bacteria 2827
34 Ga0307411_10277182 3300032005 Bacteria 1333
35 Ga0307415_100040278 3300032126 Bacteria 3094
36 Ga0307507_10047082 3300033179 Bacteria 4218
37 Ga0373951_0000011 3300035091 Bacteria 76225
38 Ga0395900_0043536 3300037418 Bacteria 4627
39 Ga0395898_0028123 3300037466 Bacteria 5638
40 Ga0395898_0101091 3300037466 Bacteria 2769
41 Ga0395905_0076617 3300037471 Bacteria 3134
42 Ga0395901_0269965 3300038443 Bacteria 1769
43 Ga0451853_2999888 3300041512 Bacteria 2501
44 Ga0439449_0020460 3300042007 Bacteria 2479
45 Ga0439457_001567 3300042014 Bacteria 6851
46 Ga0466972_0004325 3300044658 Bacteria 7097
47 Ga0466972_0071055 3300044658 Bacteria 1661
48 Ga0466965_0007215 3300044683 Bacteria 5095
49 Ga0466966_0005232 3300044684 Bacteria 8531
50 Ga0466961_0015556 3300044693 Bacteria 4883
51 Ga0466961_0015939 3300044693 Bacteria 4823
52 Ga0466961_0017140 3300044693 Bacteria 4653
53 Ga0466970_0000276 3300044765 Bacteria 24987
54 Ga0466970_0073936 3300044765 Bacteria 1834
55 Ga0466970_0101872 3300044765 Bacteria 1564
56 Ga0466958_0081730 3300045836 Bacteria 1989
57 Ga0495617_004480 3300046452 Bacteria 5081
58 Ga0495627_046006 3300046453 Bacteria 1328
59 Ga0495603_0024493 3300046455 Bacteria 3650
60 Ga0495629_0001207 3300046459 Bacteria 20298
61 Ga0495629_0025748 3300046459 Bacteria 4181
62 Ga0495638_0108328 3300046460 Bacteria 1653
63 Ga0495662_0003804 3300046476 Bacteria 7610
64 Ga0495585_0083182 3300046492 Bacteria 1732
65 Ga0495594_0002222 3300046499 Bacteria 10091
66 Ga0495622_0038249 3300046557 Bacteria 2234
67 Ga0495625_0203384 3300046660 Bacteria 1305
68 Ga0495588_0015274 3300046674 Bacteria 3692
69 Ga0495588_0040255 3300046674 Bacteria 2383
70 Ga0495613_0091237 3300046689 Bacteria 2206
71 Ga0495670_0147979 3300046691 Bacteria 1231
72 Ga0495660_0011784 3300046810 Bacteria 5070
73 Ga0495581_0096578 3300047315 Bacteria 1716
74 Ga0495636_0014421 3300047318 Bacteria 3142
75 Ga0495636_0108762 3300047318 Bacteria 1218
76 Ga0495636_0147401 3300047318 Bacteria 1054
77 Ga0495676_0010109 3300047321 Bacteria 8568
78 Ga0495683_0028145 3300047323 Bacteria 2873
79 Ga0495683_0115458 3300047323 Bacteria 1278
80 Ga0495687_001684 3300047443 Bacteria 19719
81 Ga0495687_008804 3300047443 Bacteria 5725
82 Ga0495675_0027268 3300047444 Bacteria 3640
83 Ga0495685_002408 3300047447 Bacteria 5866
84 Ga0495685_060649 3300047447 Bacteria 1275
85 Ga0495681_0008516 3300047470 Bacteria 6422
86 Ga0495686_0113049 3300047472 Bacteria 1626
87 Ga0495686_0163264 3300047472 Bacteria 1300
88 Ga0496108_0000922 3300048911 Bacteria 22933
89 Ga0496108_0222521 3300048911 Bacteria 1640
90 Ga0496109_0106205 3300048912 Bacteria 2608
91 Ga0501033_0038953 3300049570 Bacteria 3551
92 Ga0501034_0127078 3300049571 Bacteria 2534
93 Ga0501034_0269504 3300049571 Bacteria 1644
94 Ga0501036_0005226 3300049572 Bacteria 10500
95 Ga0501038_0053628 3300049574 Bacteria 3470
96 Ga0501042_0001318 3300049578 Bacteria 14469
97 Ga0501046_0037490 3300049580 Bacteria 3895
98 Ga0501046_0176331 3300049580 Bacteria 1601
99 Ga0501047_0092572 3300049581 Bacteria 2901
100 Ga0501047_0178359 3300049581 Bacteria 1991
101 Ga0501048_0087267 3300049582 Bacteria 2201
102 Ga0501069_0158980 3300049585 Bacteria 1301
103 Ga0501073_0301919 3300049589 Bacteria 1105
104 Ga0501074_0017164 3300049590 Bacteria 5251
105 Ga0501035_0020507 3300049822 Bacteria 6071
106 Ga0501044_0006318 3300049823 Bacteria 13104
107 Ga0501044_0064653 3300049823 Bacteria 3734
108 Ga0501044_0552264 3300049823 Bacteria 1049
109 Ga0495601_0254293 3300053077 Bacteria 1147
110 Ga0500610_0066672 3300053079 Bacteria 1877
111 Ga0500578_0046596 3300053086 Bacteria 2781
112 Ga0500644_0044062 3300053088 Bacteria 1496
113 Ga0500641_0074049 3300053096 Bacteria 1438
114 Ga0500628_001249 3300053129 Bacteria 4391
115 Ga0500561_0003152 3300053137 Bacteria 2852
116 Ga0500588_0073568 3300053146 Bacteria 1127
117 Ga0500600_0080292 3300053149 Bacteria 1765
118 Ga0500633_0063412 3300053160 Bacteria 1305
119 Ga0500656_000755 3300053732 Bacteria 2542
120 Ga0500587_002824 3300053739 Bacteria 2453
121 Ga0466962_0023037 3300061719 Bacteria 2994
122 Ga0466962_0116031 3300061719 Bacteria 1290
123 2559429155 2558860280 Bacteria 11429938
124 2643760700 2643221548 Bacteria 8053412
125 2644436675 2643221678 Bacteria 9540101
126 2784592470 2784132148 Bacteria 8627943
127 2785343911 2784746763 Bacteria 9783172
128 2793984595 2791355406 Bacteria 11364898
129 2819695709 2818991463 Bacteria 7948711
130 2899369647 2899359706 Bacteria 10940472
131 2912720546 2912715099 Bacteria 9460473
132 2912728617 2912723979 Bacteria 8557534
133 2915775339 2915768154 Bacteria 8424322
134 2919717404 2919713450 Bacteria 7431245
135 2990091634 2990088156 Bacteria 6657676
136 2997607974 2997600082 Bacteria 9896405
137 3006394249 3006393351 Bacteria 6615579
138 3006427085 3006425503 Bacteria 6491253
139 8008559866 8008558824 Bacteria 10610750
140 8008579299 8008574985 Bacteria 7815457
141 8047898653 8047893842 Bacteria 11723082
142 8048136019 8048127548 Bacteria 11053136
143 8048360266 8048356638 Bacteria 11044339
144 8048375615 8048369669 Bacteria 11666822
145 8048382590 8048379754 Bacteria 11877923
146 8056830341 8056829672 Bacteria 9045328
147 Ga0500569_022252
148 JGI25406J46586_10001268
149 Ga0006562J51391_1161586
150 Ga0006562J51391_1161588
151 Ga0070714_100024665
152 Ga0070679_100336765
153 Ga0068853_100180668
154 Ga0070665_100051140
155 Ga0068855_100005658
156 Ga0081455_10000203
157 Ga0081539_10001033
158 Ga0070717_10067571
159 Ga0105240_10047730
160 Ga0105241_10000971
161 Ga0207654_10006519
162 Ga0207695_10002170
163 Ga0207671_10001257
164 Ga0207652_10302323
165 Ga0207694_10003814
166 Ga0207664_10000611
167 Ga0307517_10015610
168 Ga0307517_10081394
169 Ga0307515_10009596
170 Ga0307512_10004350
171 Ga0307512_10016714
172 Ga0307513_10049314
173 Ga0307509_10164956
174 Ga0307509_10220410
175 Ga0307508_10006769
176 Ga0307508_10173762
177 Ga0307514_10089175
178 Ga0307516_10001703
179 Ga0307405_10040342
180 Ga0307411_10277182
181 Ga0307415_100040278
182 Ga0307507_10047082
183 Ga0373951_0000011
184 Ga0395900_0043536
185 Ga0395898_0028123
186 Ga0395898_0101091
187 Ga0395905_0076617
188 Ga0395901_0269965
189 Ga0451853_2999888
190 Ga0439449_0020460
191 Ga0439457_001567
192 Ga0466972_0004325
193 Ga0466972_0071055
194 Ga0466965_0007215
195 Ga0466966_0005232
196 Ga0466961_0015556
197 Ga0466961_0015939
198 Ga0466961_0017140
199 Ga0466970_0000276
200 Ga0466970_0073936
201 Ga0466970_0101872
202 Ga0466958_0081730
203 Ga0495617_004480
204 Ga0495627_046006
205 Ga0495603_0024493
206 Ga0495629_0001207
207 Ga0495629_0025748
208 Ga0495638_0108328
209 Ga0495662_0003804
210 Ga0495585_0083182
211 Ga0495594_0002222
212 Ga0495622_0038249
213 Ga0495625_0203384
214 Ga0495588_0015274
215 Ga0495588_0040255
216 Ga0495613_0091237
217 Ga0495670_0147979
218 Ga0495660_0011784
219 Ga0495581_0096578
220 Ga0495636_0014421
221 Ga0495636_0108762
222 Ga0495636_0147401
223 Ga0495676_0010109
224 Ga0495683_0028145
225 Ga0495683_0115458
226 Ga0495687_001684
227 Ga0495687_008804
228 Ga0495675_0027268
229 Ga0495685_002408
230 Ga0495685_060649
231 Ga0495681_0008516
232 Ga0495686_0113049
233 Ga0495686_0163264
234 Ga0496108_0000922
235 Ga0496108_0222521
236 Ga0496109_0106205
237 Ga0501033_0038953
238 Ga0501034_0127078
239 Ga0501034_0269504
240 Ga0501036_0005226
241 Ga0501038_0053628
242 Ga0501042_0001318
243 Ga0501046_0037490
244 Ga0501046_0176331
245 Ga0501047_0092572
246 Ga0501047_0178359
247 Ga0501048_0087267
248 Ga0501069_0158980
249 Ga0501073_0301919
250 Ga0501074_0017164
251 Ga0501035_0020507
252 Ga0501044_0006318
253 Ga0501044_0064653
254 Ga0501044_0552264
255 Ga0495601_0254293
256 Ga0500610_0066672
257 Ga0500578_0046596
258 Ga0500644_0044062
259 Ga0500641_0074049
260 Ga0500628_001249
261 Ga0500561_0003152
262 Ga0500588_0073568
263 Ga0500600_0080292
264 Ga0500633_0063412
265 Ga0500656_000755
266 Ga0500587_002824
267 Ga0466962_0023037
268 Ga0466962_0116031
269 2559429155
270 2643760700
271 2644436675
272 2784592470
273 2785343911
274 2793984595
275 2819695709
276 2899369647
277 2912720546
278 2912728617
279 2915775339
280 2919717404
281 2990091634
282 2997607974
283 3006394249
284 3006427085
285 8008559866
286 8008579299
287 8047898653
288 8048136019
289 8048360266
290 8048375615
291 8048382590
292 8056830341

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12833

HTH_18

Helix-turn-helix domain

220

299

0.97

PF00165

HTH_AraC

Bacterial regulatory helix-turn-helix proteins, AraC family

207

248

0.96

PF00165

HTH_AraC

Bacterial regulatory helix-turn-helix proteins, AraC family

259

298

0.93

PF01965

DJ-1_PfpI

DJ-1/PfpI family

2

170

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
3w6v-assembly1.cif.gz_A crystal structure of the dna-binding domain of adpa, the global transcriptional factor, in complex with a target dna 0.9529 209 311
6swi-assembly1.cif.gz_A the c-terminal domain of arat, a response regulator from geobacillus stearothermophilus 0.9379 209 309
3lsg-assembly1.cif.gz_A the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.9244 208 307
3oio-assembly1.cif.gz_A crystal structure of transcriptional regulator (arac-type dna-binding domain-containing proteins) from chromobacterium violaceum 0.9235 208 308
3lsg-assembly2.cif.gz_D the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.905 208 299
ID Description Score Start End Superfamily
af_P32677_219_275_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9728 259 311 1.10.10.60
3lsgA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9592 263 307 1.10.10.60
1d5yD02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9546 261 308 1.10.10.60
af_P77379_178_282_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9532 210 311 1.10.10.60
3w6vA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9529 209 311 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A5Q4T4C4-F1-model_v4 AraC family transcriptional regulator 0.964 209 308 GO:0003700
GO:0043565
AF-R5J228-F1-model_v4 deleted 0.9628 209 309
AF-A0A7S1E972-F1-model_v4 DJ-1/PfpI domain-containing protein 0.9621 65 166 GO:0006355
AF-A0A7C6QVH2-F1-model_v4 Stage 0 sporulation protein A homolog 0.9577 208 312 GO:0000160
GO:0003700
GO:0043565
AF-A0A355RZS5-F1-model_v4 HTH araC/xylS-type domain-containing protein 0.9575 208 311 GO:0003700
GO:0043565

Map