F192947

General Info

Members Datasets Scaffolds Average Seq Length
144 113 288 341

Family's Representative Sequence

Representative Sequence 3300049584|Ga0501068_0052948|Ga0501068_0052948_1236_2327
Length 363
Sequence MSRSLVSASPQPASARSFQSILVTGGAGFIGSAFIRWLFRQGSFQGRIVNYDALTYAGNLENIEGAVDPARYHFVRGDICDREAVLKACEEHRVDAIVNFAAESHVDRSILGPGAFVQTNVMGTFALLEVVRARPGIHFHHVSTDEVFGSLGATGAFSEESPYRPNSPYSASKAASDHLLRAYTHTYGISSTLSNCSNNYGPYQFPEKLIPLMIANLLEGKPLPVYGDGTNVRDWLYVDDHAEAIWMVLCGGALGSTYNVGGRAEWQNLALLKRLIAVVADEAKRDAAQLEQQITFVKDRPGHDQRYAVDCEKIERELGWRPRHDLESGLRETVRWYLANPGWVERVRTGAYRQWLQANYESR

Samples

Sample ID Description Type Environment
1 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
12 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
13 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
18 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
21 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
22 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
23 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
24 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
25 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
29 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
30 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
34 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
35 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
49 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
50 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
51 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
52 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
53 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
54 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
55 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
56 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
57 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
58 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
59 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
60 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
61 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
62 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
63 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
64 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
65 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
66 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
67 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
68 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
69 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
70 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
71 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
72 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
73 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
74 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
75 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
76 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
77 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
78 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
79 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
80 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
81 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
82 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
83 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
84 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
85 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
86 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
87 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
88 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
89 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
90 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
91 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
92 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
93 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
94 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
95 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
97 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
98 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
99 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
100 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
101 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
102 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
103 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
104 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
105 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
106 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
107 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
108 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
109 2684623219 Planctomyces sp. SH-PL14 Isolate Unclassified
110 2687453257 Planctomyces sp. SH-PL62 Isolate Unclassified
111 2889415604 Paludisphaera rhizosphaerae JC665 Isolate Rhizosphere
112 2920107658 Aquisphaera insulae JC669 Isolate Rhizosphere
113 8022621104 Bacillus sp. PIC28 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.53
Metatranscriptomes 0
Isolates 3.47

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.03
Nodule 0
Rhizoplane 2.08
Rhizosphere 73.61
Stem 0
Stem Tuber 0
Unclassified 2.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501068_0052948 3300049584 Bacteria 2456
2 rootH2_10094989 3300003320 Bacteria 10151
3 rootH1_10011870 3300003323 Bacteria 21033
4 rootH1_10152682 3300003323 Bacteria 4492
5 rootH1_10236382 3300003323 Bacteria 2646
6 Ga0070690_100173754 3300005330 Bacteria 1484
7 Ga0070680_100061243 3300005336 Bacteria 3080
8 Ga0070682_100004098 3300005337 Bacteria 8090
9 Ga0070669_100016830 3300005353 Bacteria 5219
10 Ga0070675_100054667 3300005354 Bacteria 3285
11 Ga0070694_100083004 3300005444 Bacteria 2232
12 Ga0070681_10017259 3300005458 Bacteria 7215
13 Ga0070685_10023642 3300005466 Bacteria 3367
14 Ga0070672_100001226 3300005543 Bacteria 15776
15 Ga0070686_100077135 3300005544 Bacteria 2196
16 Ga0068855_100000045 3300005563 Bacteria 147511
17 Ga0068855_100000781 3300005563 Bacteria 39298
18 Ga0068856_100007296 3300005614 Bacteria 10788
19 Ga0068859_100032390 3300005617 Bacteria 5252
20 Ga0068866_10000046 3300005718 Bacteria 48270
21 Ga0068861_100181081 3300005719 Bacteria 1754
22 Ga0068858_100084030 3300005842 Unclassified 2961
23 Ga0075363_100035186 3300006048 Bacteria 2619
24 Ga0075364_10003499 3300006051 Bacteria 8939
25 Ga0075362_10000077 3300006177 Bacteria 26880
26 Ga0075366_10026930 3300006195 Bacteria 3370
27 Ga0075370_10000388 3300006353 Bacteria 16234
28 Ga0097620_100032390 3300006931 Bacteria 5252
29 Ga0105240_10006059 3300009093 Bacteria 17863
30 Ga0111539_10511321 3300009094 Bacteria 1399
31 Ga0105245_10000845 3300009098 Bacteria 27802
32 Ga0105241_10020069 3300009174 Bacteria 4936
33 Ga0105242_10000180 3300009176 Bacteria 48253
34 Ga0105242_10197352 3300009176 Bacteria 1785
35 Ga0105249_10012389 3300009553 Bacteria 7515
36 Ga0105239_10000687 3300010375 Bacteria 48253
37 Ga0105239_10036314 3300010375 Bacteria 5410
38 Ga0157376_10000748 3300014969 Bacteria 21154
39 Ga0157376_10047271 3300014969 Bacteria 3552
40 Ga0157376_10171157 3300014969 Bacteria 1978
41 Ga0213872_10048132 3300021361 Bacteria 1938
42 Ga0207642_10000027 3300025899 Bacteria 48240
43 Ga0207654_10007192 3300025911 Bacteria 5607
44 Ga0207707_10033819 3300025912 Bacteria 4475
45 Ga0207695_10002547 3300025913 Bacteria 26780
46 Ga0207681_10005029 3300025923 Bacteria 8128
47 Ga0207659_10132300 3300025926 Bacteria 1927
48 Ga0207687_10002904 3300025927 Bacteria 11625
49 Ga0207686_10000072 3300025934 Bacteria 92734
50 Ga0207686_10059454 3300025934 Bacteria 2415
51 Ga0207667_10000295 3300025949 Bacteria 68803
52 Ga0207667_10002891 3300025949 Bacteria 21315
53 Ga0207712_10012768 3300025961 Bacteria 5370
54 Ga0207703_10124093 3300026035 Unclassified 2221
55 Ga0207702_10038932 3300026078 Bacteria 3982
56 Ga0207641_10064763 3300026088 Bacteria 3125
57 Ga0265338_10173730 3300028800 Bacteria 1649
58 Ga0265330_10083506 3300031235 Bacteria 1374
59 Ga0265332_10006772 3300031238 Bacteria 5192
60 Ga0265340_10023363 3300031247 Bacteria 3153
61 Ga0265339_10000112 3300031249 Bacteria 66101
62 Ga0265316_10002114 3300031344 Bacteria 20882
63 Ga0265316_10003871 3300031344 Bacteria 15011
64 Ga0265316_10062694 3300031344 Bacteria 2885
65 Ga0307508_10002537 3300031616 Bacteria 19215
66 Ga0265314_10000003 3300031711 Bacteria 1653386
67 Ga0316576_10003812 3300031727 Bacteria 8919
68 Ga0316576_10025272 3300031727 Bacteria 4156
69 Ga0316578_10039169 3300031728 Bacteria 2737
70 Ga0316578_10085356 3300031728 Bacteria 1882
71 Ga0307516_10019040 3300031730 Bacteria 7122
72 Ga0316577_10133663 3300031733 Bacteria 1396
73 Ga0307410_10003439 3300031852 Bacteria 7944
74 Ga0307409_100242729 3300031995 Bacteria 1641
75 Ga0316574_0104922 3300035398 Bacteria 1810
76 Ga0373937_0425093 3300036401 Bacteria 1261
77 Ga0316584_0047120 3300036712 Bacteria 3219
78 Ga0316584_0164435 3300036712 Bacteria 1648
79 Ga0373925_0067525 3300037068 Bacteria 2697
80 Ga0395905_0000396 3300037471 Bacteria 61743
81 Ga0400484_31325 3300038725 Bacteria 2119
82 Ga0400484_36379 3300038725 Bacteria 1565
83 Ga0400490_10208 3300038726 Bacteria 5902
84 Ga0400491_22011 3300038727 Bacteria 5354
85 Ga0400488_51491 3300038741 Bacteria 1551
86 Ga0400488_53713 3300038741 Bacteria 3778
87 Ga0400483_081982 3300039062 Bacteria 15849
88 Ga0400489_19416 3300039093 Bacteria 74597
89 Ga0400489_81741 3300039093 Bacteria 61469
90 Ga0436360_0217099 3300039438 Bacteria 2133
91 Ga0436360_1283187 3300039438 Bacteria 3026
92 Ga0436361_0240749 3300039447 Bacteria 3188
93 Ga0436362_0631159 3300039453 Bacteria 5426
94 Ga0451793_0298751 3300041452 Bacteria 2912
95 Ga0451807_0376536 3300041486 Bacteria 5471
96 Ga0451849_1166574 3300041505 Bacteria 4739
97 Ga0453683_0002718 3300044673 Bacteria 13503
98 Ga0453683_0003471 3300044673 Bacteria 11607
99 Ga0453683_0033272 3300044673 Bacteria 3251
100 Ga0453683_0042890 3300044673 Bacteria 2840
101 Ga0453683_0153975 3300044673 Unclassified 1453
102 Ga0453684_0009346 3300044712 Bacteria 17184
103 Ga0453684_0080307 3300044712 Bacteria 4073
104 Ga0453684_0209708 3300044712 Bacteria 2265
105 Ga0453684_0252114 3300044712 Bacteria 2026
106 Ga0453684_0276364 3300044712 Bacteria 1917
107 Ga0453684_0307594 3300044712 Bacteria 1800
108 Ga0453684_0321325 3300044712 Bacteria 1753
109 Ga0453684_0322752 3300044712 Bacteria 1748
110 Ga0453684_0585697 3300044712 Bacteria 1224
111 Ga0466971_0052057 3300044719 Bacteria 1844
112 Ga0466960_0093141 3300044901 Bacteria 1539
113 Ga0451576_0000229 3300045051 Bacteria 136407
114 Ga0495651_0160548 3300046462 Bacteria 1611
115 Ga0495580_0000218 3300046472 Bacteria 44275
116 Ga0495582_0001751 3300046473 Bacteria 12255
117 Ga0495639_0086319 3300046475 Bacteria 1468
118 Ga0495594_0001445 3300046499 Bacteria 12316
119 Ga0495666_0048634 3300046526 Bacteria 2042
120 Ga0495672_0000544 3300047320 Bacteria 42844
121 Ga0496115_0301511 3300048918 Bacteria 1313
122 Ga0496116_0077087 3300048919 Bacteria 2085
123 Ga0496116_0078111 3300048919 Bacteria 2066
124 Ga0496117_0078111 3300048920 Bacteria 2187
125 Ga0496121_0133524 3300048924 Bacteria 1853
126 Ga0501043_0320577 3300049579 Bacteria 1182
127 Ga0501073_0059807 3300049589 Bacteria 2660
128 Ga0501259_000653 3300049688 Bacteria 5570
129 Ga0501035_0200092 3300049822 Bacteria 1714
130 nmdc:mga03683_82_c1 3300050489 Bacteria 35848
131 nmdc:mga03n38_15361_c1 3300050490 Bacteria 2955
132 nmdc:mga00v17_368_c1 3300050491 Bacteria 25602
133 nmdc:mga07m45_37402_c1 3300050496 Bacteria 2707
134 nmdc:mga08y16_471675_c1 3300050511 Bacteria 1278
135 Ga0500647_0107878 3300053091 Bacteria 1326
136 Ga0500595_000161 3300053119 Bacteria 44208
137 Ga0500638_000019 3300053162 Bacteria 86980
138 Ga0500645_014229 3300053730 Bacteria 2538
139 Ga0501084_0048819 3300054114 Bacteria 3543
140 2687238533 2684623219 Bacteria 8442773
141 2688070653 2687453257 Bacteria 6784659
142 2889421904 2889415604 Bacteria 8048700
143 2920108713 2920107658 Bacteria 10042636
144 8022626724 8022621104 Bacteria 5241040
145 Ga0501068_0052948
146 rootH2_10094989
147 rootH1_10011870
148 rootH1_10152682
149 rootH1_10236382
150 Ga0070690_100173754
151 Ga0070680_100061243
152 Ga0070682_100004098
153 Ga0070669_100016830
154 Ga0070675_100054667
155 Ga0070694_100083004
156 Ga0070681_10017259
157 Ga0070685_10023642
158 Ga0070672_100001226
159 Ga0070686_100077135
160 Ga0068855_100000045
161 Ga0068855_100000781
162 Ga0068856_100007296
163 Ga0068859_100032390
164 Ga0068866_10000046
165 Ga0068861_100181081
166 Ga0068858_100084030
167 Ga0075363_100035186
168 Ga0075364_10003499
169 Ga0075362_10000077
170 Ga0075366_10026930
171 Ga0075370_10000388
172 Ga0097620_100032390
173 Ga0105240_10006059
174 Ga0111539_10511321
175 Ga0105245_10000845
176 Ga0105241_10020069
177 Ga0105242_10000180
178 Ga0105242_10197352
179 Ga0105249_10012389
180 Ga0105239_10000687
181 Ga0105239_10036314
182 Ga0157376_10000748
183 Ga0157376_10047271
184 Ga0157376_10171157
185 Ga0213872_10048132
186 Ga0207642_10000027
187 Ga0207654_10007192
188 Ga0207707_10033819
189 Ga0207695_10002547
190 Ga0207681_10005029
191 Ga0207659_10132300
192 Ga0207687_10002904
193 Ga0207686_10000072
194 Ga0207686_10059454
195 Ga0207667_10000295
196 Ga0207667_10002891
197 Ga0207712_10012768
198 Ga0207703_10124093
199 Ga0207702_10038932
200 Ga0207641_10064763
201 Ga0265338_10173730
202 Ga0265330_10083506
203 Ga0265332_10006772
204 Ga0265340_10023363
205 Ga0265339_10000112
206 Ga0265316_10002114
207 Ga0265316_10003871
208 Ga0265316_10062694
209 Ga0307508_10002537
210 Ga0265314_10000003
211 Ga0316576_10003812
212 Ga0316576_10025272
213 Ga0316578_10039169
214 Ga0316578_10085356
215 Ga0307516_10019040
216 Ga0316577_10133663
217 Ga0307410_10003439
218 Ga0307409_100242729
219 Ga0316574_0104922
220 Ga0373937_0425093
221 Ga0316584_0047120
222 Ga0316584_0164435
223 Ga0373925_0067525
224 Ga0395905_0000396
225 Ga0400484_31325
226 Ga0400484_36379
227 Ga0400490_10208
228 Ga0400491_22011
229 Ga0400488_51491
230 Ga0400488_53713
231 Ga0400483_081982
232 Ga0400489_19416
233 Ga0400489_81741
234 Ga0436360_0217099
235 Ga0436360_1283187
236 Ga0436361_0240749
237 Ga0436362_0631159
238 Ga0451793_0298751
239 Ga0451807_0376536
240 Ga0451849_1166574
241 Ga0453683_0002718
242 Ga0453683_0003471
243 Ga0453683_0033272
244 Ga0453683_0042890
245 Ga0453683_0153975
246 Ga0453684_0009346
247 Ga0453684_0080307
248 Ga0453684_0209708
249 Ga0453684_0252114
250 Ga0453684_0276364
251 Ga0453684_0307594
252 Ga0453684_0321325
253 Ga0453684_0322752
254 Ga0453684_0585697
255 Ga0466971_0052057
256 Ga0466960_0093141
257 Ga0451576_0000229
258 Ga0495651_0160548
259 Ga0495580_0000218
260 Ga0495582_0001751
261 Ga0495639_0086319
262 Ga0495594_0001445
263 Ga0495666_0048634
264 Ga0495672_0000544
265 Ga0496115_0301511
266 Ga0496116_0077087
267 Ga0496116_0078111
268 Ga0496117_0078111
269 Ga0496121_0133524
270 Ga0501043_0320577
271 Ga0501073_0059807
272 Ga0501259_000653
273 Ga0501035_0200092
274 nmdc:mga03683_82_c1
275 nmdc:mga03n38_15361_c1
276 nmdc:mga00v17_368_c1
277 nmdc:mga07m45_37402_c1
278 nmdc:mga08y16_471675_c1
279 Ga0500647_0107878
280 Ga0500595_000161
281 Ga0500638_000019
282 Ga0500645_014229
283 Ga0501084_0048819
284 2687238533
285 2688070653
286 2889421904
287 2920108713
288 8022626724

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

21

261

0.97

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

22

333

0.94

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

21

304

0.89

PF04321

RmlD_sub_bind

RmlD substrate binding domain

19

334

0.89

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

22

255

0.78

PF07993

NAD_binding_4

Male sterility protein

23

200

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
6bi4-assembly2.cif.gz_C 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.968 13 341
6bi4-assembly2.cif.gz_B 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9674 13 341
6bi4-assembly2.cif.gz_C 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9588 13 341
6bi4-assembly2.cif.gz_B 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9582 13 341
2hun-assembly1.cif.gz_B crystal structure of hypothetical protein ph0414 from pyrococcus horikoshii ot3 0.9464 13 341
ID Description Score Start End Superfamily
4egbB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9531 14 316 3.40.50.720
4egbB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9396 14 316 3.40.50.720
af_Q54WS6_11_352_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9111 15 320 3.40.50.720
2p5yA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9063 14 255 3.40.50.720
4zrnB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9056 14 255 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A1H6LV20-F1-model_v4 dTDP-glucose 4,6-dehydratase 0.9756 131 268
AF-A0A662ZRW6-F1-model_v4 deleted 0.9728 176 333
AF-A0A349Y3Z6-F1-model_v4 dTDP-glucose 4,6-dehydratase 0.9703 120 347
AF-A0A257JNA2-F1-model_v4 NAD(P)-binding domain-containing protein 0.9702 142 345
AF-A0A2X1PPC2-F1-model_v4 dTDP-glucose 46-dehydratase (EC 4.2.1.46) 0.968 186 279 GO:0008460

Map