F192407

General Info

Members Datasets Scaffolds Average Seq Length
144 114 288 208

Family's Representative Sequence

Representative Sequence 3300039062|Ga0400483_141801|Ga0400483_141801_180_857
Length 225
Sequence MYQELSLDISTLVNFESITLSSLGSFILVSLLLSAAPGPDNVFVLSQSMQHGKRAGYLIVAGLCTGLLGHTIAATTGIFALLQTSPLALNALKLLGASYLLYLAWQIFWEERKQVHLDFKPQEKPECSWRLYSRGIIMNISNPKIAVFFLAFFPQFTNEEAGSIPAQIIVLGVVFILCAATVFLAIATVAGALGERLQKSATIQRWLNRIAGIVLILLALHVALS

Samples

Sample ID Description Type Environment
1 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
8 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
13 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
16 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
23 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
26 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
27 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
28 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
29 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
30 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
31 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
34 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
35 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
36 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
37 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
38 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
39 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
40 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
53 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
54 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
55 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
56 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
57 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
58 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
59 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
60 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
61 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
62 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
63 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
64 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
65 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
66 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
67 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
68 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
69 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
70 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
71 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
72 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
73 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
74 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
75 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
76 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
77 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
78 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
79 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
80 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
81 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
82 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
83 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
84 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
85 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
86 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
87 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
88 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
89 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
90 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
91 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
92 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
93 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
94 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
96 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
97 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
98 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
99 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
100 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
101 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
102 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
103 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
104 2582581298 Rhizobium alamii YR540 Isolate Rhizosphere
105 2585427529 Rhizobium alamii YR584 Isolate Rhizosphere
106 2739367655 Pusillimonas sp. YR330 Isolate Unclassified
107 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
108 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
109 2847670302 Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 Isolate Nodule
110 2856314179 Mesorhizobium sp. M3A.F.Ca.ET.175.01.1.1 Isolate Nodule
111 2878035449 Mesorhizobium sp. M3A.F.Ca.ET.201.01.1.1 Isolate Nodule
112 2888343758 Mesorhizobium sp. AA22 Isolate Unclassified
113 2906414383 Mesorhizobium sp. M3A.F.Ca.ET.174.01.1.1 Isolate Nodule
114 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.36
Metatranscriptomes 0
Isolates 7.64

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.94
Nodule 2.78
Rhizoplane 6.94
Rhizosphere 61.11
Stem 0
Stem Tuber 0
Unclassified 3.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0400483_141801 3300039062 Bacteria 1515
2 JGI25162J39368_1000016 3300002737 Bacteria 288734
3 Ga0070690_100150404 3300005330 Bacteria 1588
4 Ga0070689_100454017 3300005340 Bacteria 1091
5 Ga0070669_100190656 3300005353 Unclassified 1608
6 Ga0070674_100052985 3300005356 Bacteria 2800
7 Ga0070667_100323859 3300005367 Bacteria 1391
8 Ga0070701_10246933 3300005438 Bacteria 1076
9 Ga0070705_100009571 3300005440 Bacteria 4823
10 Ga0070705_100209692 3300005440 Bacteria 1342
11 Ga0070663_100084514 3300005455 Bacteria 2339
12 Ga0070678_100001193 3300005456 Bacteria 13832
13 Ga0070686_100041679 3300005544 Bacteria 2871
14 Ga0070693_100049288 3300005547 Bacteria 2402
15 Ga0070665_100171017 3300005548 Bacteria 2174
16 Ga0070704_100224497 3300005549 Bacteria 1529
17 Ga0070702_100038617 3300005615 Bacteria 2660
18 Ga0068863_100928616 3300005841 Bacteria 871
19 Ga0068858_100050833 3300005842 Bacteria 3836
20 Ga0068860_100029375 3300005843 Bacteria 5287
21 Ga0068862_101337842 3300005844 Bacteria 718
22 Ga0081455_10012561 3300005937 Bacteria 8447
23 Ga0075364_10000147 3300006051 Bacteria 30991
24 Ga0075364_10190814 3300006051 Bacteria 1388
25 Ga0068871_100023180 3300006358 Bacteria 4796
26 Ga0075430_100428146 3300006846 Unclassified 1092
27 Ga0068865_100020708 3300006881 Bacteria 4269
28 Ga0105245_10155584 3300009098 Bacteria 2165
29 Ga0105247_10046076 3300009101 Bacteria 2676
30 Ga0105243_10012448 3300009148 Bacteria 6430
31 Ga0105241_10004216 3300009174 Bacteria 10619
32 Ga0105242_10004820 3300009176 Bacteria 10442
33 Ga0105242_10044732 3300009176 Bacteria 3586
34 Ga0105248_10012340 3300009177 Bacteria 9428
35 Ga0105249_10412055 3300009553 Bacteria 1383
36 Ga0099796_10169101 3300010159 Bacteria 871
37 Ga0105246_10478811 3300011119 Bacteria 1053
38 Ga0157378_10075434 3300013297 Bacteria 3036
39 Ga0157380_10007305 3300014326 Bacteria 7841
40 Ga0157379_10007397 3300014968 Bacteria 9504
41 Ga0157376_10003319 3300014969 Bacteria 11073
42 Ga0209758_1070028 3300025297 Unclassified 1109
43 Ga0207654_10109709 3300025911 Bacteria 1715
44 Ga0207687_10103761 3300025927 Bacteria 2097
45 Ga0207644_10469164 3300025931 Bacteria 1036
46 Ga0207686_10181749 3300025934 Bacteria 1492
47 Ga0207709_10139771 3300025935 Bacteria 1663
48 Ga0207669_10068382 3300025937 Bacteria 2218
49 Ga0207704_10106664 3300025938 Bacteria 1882
50 Ga0207711_10078100 3300025941 Bacteria 2886
51 Ga0207658_10025269 3300025986 Bacteria 4159
52 Ga0207678_10014699 3300026067 Bacteria 6887
53 Ga0207683_10000039 3300026121 Bacteria 99697
54 Ga0268264_10007411 3300028381 Bacteria 9159
55 Ga0307515_10004006 3300028794 Bacteria 30751
56 Ga0316177_1049759 3300030731 Bacteria 7196
57 Ga0316176_1150887 3300030732 Bacteria 12451
58 Ga0265331_10189277 3300031250 Unclassified 929
59 Ga0265327_10009596 3300031251 Bacteria 6954
60 Ga0316576_10308704 3300031727 Bacteria 1181
61 Ga0307414_10107580 3300032004 Bacteria 2113
62 Ga0316583_10023806 3300032133 Bacteria 2186
63 Ga0316574_0111936 3300035398 Bacteria 1750
64 Ga0395899_0000570 3300037312 Bacteria 39268
65 Ga0395899_0002012 3300037312 Bacteria 16742
66 Ga0395900_0083693 3300037418 Bacteria 3277
67 Ga0395900_0504703 3300037418 Bacteria 1159
68 Ga0395898_0100446 3300037466 Bacteria 2778
69 Ga0395901_0008918 3300038443 Bacteria 10160
70 Ga0395901_0135788 3300038443 Bacteria 2585
71 Ga0395901_0137315 3300038443 Bacteria 2569
72 Ga0400484_05198 3300038725 Bacteria 4528
73 Ga0400484_38292 3300038725 Bacteria 33445
74 Ga0400490_27002 3300038726 Bacteria 9105
75 Ga0400490_27689 3300038726 Bacteria 34240
76 Ga0400490_49886 3300038726 Bacteria 96748
77 Ga0400491_03530 3300038727 Bacteria 13038
78 Ga0400491_09751 3300038727 Bacteria 1226
79 Ga0400485_08060 3300038735 Unclassified 4623
80 Ga0400488_01641 3300038741 Bacteria 1881
81 Ga0400488_34625 3300038741 Bacteria 1112
82 Ga0400488_46588 3300038741 Bacteria 5178
83 Ga0400488_62727 3300038741 Bacteria 1247
84 Ga0400488_63598 3300038741 Bacteria 3994
85 Ga0400486_04784 3300038742 Bacteria 42272
86 Ga0400486_05759 3300038742 Bacteria 1862
87 Ga0400483_006522 3300039062 Bacteria 12660
88 Ga0400483_031242 3300039062 Bacteria 3160
89 Ga0400483_047063 3300039062 Bacteria 3490
90 Ga0400483_107790 3300039062 Bacteria 6332
91 Ga0400483_203343 3300039062 Bacteria 8652
92 Ga0400483_269038 3300039062 Bacteria 4859
93 Ga0400489_14694 3300039093 Bacteria 2794
94 Ga0400489_71101 3300039093 Bacteria 95670
95 Ga0400489_86271 3300039093 Bacteria 25023
96 Ga0400487_09700 3300039110 Bacteria 17529
97 Ga0400487_15886 3300039110 Bacteria 3694
98 Ga0451577_0262220 3300042876 Bacteria 1565
99 Ga0453684_0017014 3300044712 Bacteria 11296
100 Ga0453684_0038056 3300044712 Bacteria 6587
101 Ga0451576_0000226 3300045051 Bacteria 138181
102 Ga0451576_0075770 3300045051 Bacteria 3501
103 Ga0451576_0191082 3300045051 Bacteria 2139
104 Ga0495629_0167036 3300046459 Bacteria 1528
105 Ga0495632_0005362 3300046519 Bacteria 8491
106 Ga0495648_0017638 3300046524 Bacteria 5093
107 Ga0495666_0024291 3300046526 Bacteria 2995
108 Ga0495652_0338023 3300046529 Bacteria 1083
109 Ga0495665_0026847 3300046531 Bacteria 3092
110 Ga0495581_0440835 3300047315 Bacteria 759
111 Ga0495604_0038526 3300047317 Bacteria 3760
112 Ga0496101_0004608 3300048904 Bacteria 8707
113 Ga0496102_0069314 3300048905 Bacteria 3237
114 Ga0496103_0007146 3300048906 Bacteria 6662
115 Ga0496104_0001559 3300048907 Bacteria 19737
116 Ga0496105_0003650 3300048908 Bacteria 11439
117 Ga0496106_0013955 3300048909 Bacteria 5941
118 Ga0496107_0009278 3300048910 Bacteria 6821
119 Ga0496109_0932198 3300048912 Bacteria 806
120 Ga0496114_0003716 3300048917 Bacteria 11751
121 Ga0496115_0053828 3300048918 Bacteria 3231
122 Ga0501034_0004902 3300049571 Bacteria 14753
123 Ga0501034_0120568 3300049571 Bacteria 2609
124 Ga0501072_0003667 3300049588 Bacteria 11574
125 Ga0501074_0131786 3300049590 Bacteria 1788
126 Ga0501080_0423089 3300049742 Bacteria 1196
127 nmdc:mga00v17_146867_c1 3300050491 Bacteria 1514
128 nmdc:mga00v17_41_c2 3300050491 Bacteria 55060
129 nmdc:mga0k408_157988_c1 3300050493 Bacteria 1350
130 nmdc:mga05p37_437845_c1 3300050507 Bacteria 1517
131 Ga0500618_000003 3300053125 Bacteria 338706
132 Ga0500568_0000324 3300053139 Bacteria 37723
133 Ga0500624_000953 3300053157 Bacteria 5976
134 2585226710 2582581298 Bacteria 7315509
135 2585550125 2585427529 Bacteria 7395659
136 2739611220 2739367655 Bacteria 4051151
137 2834643199 2834641062 Bacteria 5559922
138 2842906220 2842903701 Bacteria 6986368
139 2847671567 2847670302 Bacteria 6165597
140 2856318702 2856314179 Bacteria 6477897
141 2878038039 2878035449 Bacteria 6555736
142 2888347638 2888343758 Bacteria 6611049
143 2906418739 2906414383 Bacteria 6580790
144 8003402430 8003400568 Bacteria 5535898
145 Ga0400483_141801
146 JGI25162J39368_1000016
147 Ga0070690_100150404
148 Ga0070689_100454017
149 Ga0070669_100190656
150 Ga0070674_100052985
151 Ga0070667_100323859
152 Ga0070701_10246933
153 Ga0070705_100009571
154 Ga0070705_100209692
155 Ga0070663_100084514
156 Ga0070678_100001193
157 Ga0070686_100041679
158 Ga0070693_100049288
159 Ga0070665_100171017
160 Ga0070704_100224497
161 Ga0070702_100038617
162 Ga0068863_100928616
163 Ga0068858_100050833
164 Ga0068860_100029375
165 Ga0068862_101337842
166 Ga0081455_10012561
167 Ga0075364_10000147
168 Ga0075364_10190814
169 Ga0068871_100023180
170 Ga0075430_100428146
171 Ga0068865_100020708
172 Ga0105245_10155584
173 Ga0105247_10046076
174 Ga0105243_10012448
175 Ga0105241_10004216
176 Ga0105242_10004820
177 Ga0105242_10044732
178 Ga0105248_10012340
179 Ga0105249_10412055
180 Ga0099796_10169101
181 Ga0105246_10478811
182 Ga0157378_10075434
183 Ga0157380_10007305
184 Ga0157379_10007397
185 Ga0157376_10003319
186 Ga0209758_1070028
187 Ga0207654_10109709
188 Ga0207687_10103761
189 Ga0207644_10469164
190 Ga0207686_10181749
191 Ga0207709_10139771
192 Ga0207669_10068382
193 Ga0207704_10106664
194 Ga0207711_10078100
195 Ga0207658_10025269
196 Ga0207678_10014699
197 Ga0207683_10000039
198 Ga0268264_10007411
199 Ga0307515_10004006
200 Ga0316177_1049759
201 Ga0316176_1150887
202 Ga0265331_10189277
203 Ga0265327_10009596
204 Ga0316576_10308704
205 Ga0307414_10107580
206 Ga0316583_10023806
207 Ga0316574_0111936
208 Ga0395899_0000570
209 Ga0395899_0002012
210 Ga0395900_0083693
211 Ga0395900_0504703
212 Ga0395898_0100446
213 Ga0395901_0008918
214 Ga0395901_0135788
215 Ga0395901_0137315
216 Ga0400484_05198
217 Ga0400484_38292
218 Ga0400490_27002
219 Ga0400490_27689
220 Ga0400490_49886
221 Ga0400491_03530
222 Ga0400491_09751
223 Ga0400485_08060
224 Ga0400488_01641
225 Ga0400488_34625
226 Ga0400488_46588
227 Ga0400488_62727
228 Ga0400488_63598
229 Ga0400486_04784
230 Ga0400486_05759
231 Ga0400483_006522
232 Ga0400483_031242
233 Ga0400483_047063
234 Ga0400483_107790
235 Ga0400483_203343
236 Ga0400483_269038
237 Ga0400489_14694
238 Ga0400489_71101
239 Ga0400489_86271
240 Ga0400487_09700
241 Ga0400487_15886
242 Ga0451577_0262220
243 Ga0453684_0017014
244 Ga0453684_0038056
245 Ga0451576_0000226
246 Ga0451576_0075770
247 Ga0451576_0191082
248 Ga0495629_0167036
249 Ga0495632_0005362
250 Ga0495648_0017638
251 Ga0495666_0024291
252 Ga0495652_0338023
253 Ga0495665_0026847
254 Ga0495581_0440835
255 Ga0495604_0038526
256 Ga0496101_0004608
257 Ga0496102_0069314
258 Ga0496103_0007146
259 Ga0496104_0001559
260 Ga0496105_0003650
261 Ga0496106_0013955
262 Ga0496107_0009278
263 Ga0496109_0932198
264 Ga0496114_0003716
265 Ga0496115_0053828
266 Ga0501034_0004902
267 Ga0501034_0120568
268 Ga0501072_0003667
269 Ga0501074_0131786
270 Ga0501080_0423089
271 nmdc:mga00v17_146867_c1
272 nmdc:mga00v17_41_c2
273 nmdc:mga0k408_157988_c1
274 nmdc:mga05p37_437845_c1
275 Ga0500618_000003
276 Ga0500568_0000324
277 Ga0500624_000953
278 2585226710
279 2585550125
280 2739611220
281 2834643199
282 2842906220
283 2847671567
284 2856318702
285 2878038039
286 2888347638
287 2906418739
288 8003402430

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01810

LysE

LysE type translocator

31

225

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bp3-assembly1.cif.gz_B cryo-em structure of the human mct2 0.4909 1 207
7xq0-assembly1.cif.gz_A structure of hslc19a1+3'3'-cda 0.4671 7 208
7xq1-assembly1.cif.gz_A structure of hslc19a1+2'3'-cdas 0.4618 7 208
6lyy-assembly1.cif.gz_A cryo-em structure of the human mct1/basigin-2 complex in the presence of anti-cancer drug candidate azd3965 in the outward-open conformation. 0.4501 2 206
7bp3-assembly1.cif.gz_B cryo-em structure of the human mct2 0.4408 1 207
ID Description Score Start End Superfamily
af_Q9P7Q0_1_262_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.5672 7 205 1.20.1250.20
af_Q9P7Q0_1_262_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.5458 7 205 1.20.1250.20
af_B9G125_1_232_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.5236 5 203 1.20.1250.20
af_B9G125_1_232_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.5052 5 203 1.20.1250.20
af_P38301_1_280_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.5016 5 208 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A431MRP2-F1-model_v4 LysE family translocator 0.9301 8 208 GO:0005886
GO:0015171
AF-A0A3D5IM58-F1-model_v4 deleted 0.9294 2 208
AF-A0A560TEB9-F1-model_v4 deleted 0.9277 2 208
AF-A0A6H2CTK4-F1-model_v4 LysE family translocator 0.9267 3 205 GO:0005886
GO:0015171
AF-A0A1X7D5E6-F1-model_v4 Threonine/homoserine/homoserine lactone efflux protein 0.9263 2 208 GO:0005886
GO:0015171

Map