F192227
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 144 | 129 | 288 | 503 |
Family's Representative Sequence
| Representative Sequence | 3300032004|Ga0307414_10000085|Ga0307414_1000008578 |
| Length | 551 |
| Sequence | MNLSSTIKSIQDIMRKDDGVDGDAQRIGQLTWMLFLKIFDQCEETWEDDAADKRKKYNSPIPEDCRWRNWAKYTEDDKGKRKPQIAGSALIKYVNDVVFPGLKELDIEARATQVAQGEKDGKARDRAAKVVRDVFQDTNNYMKSGTQMLAVIEKLDEAVNFHDIKSRGQLGDVYEQILNDLRGAGNSGEFYTPRAITEFMVKMVNPNLKKRETVLDPACGTGGFLTATIAHLEGQISKKSGAEDRKAIAACIRGIEKKQLPHLLCVTNMMLHGIDVPSMIEHRNTLATGWNDWKLNERVNCVITNPPFGGMEDDGVGNDYPSDVRTRETADMFLVLIVKKLLVLKGGRGAVVLPDGTLFGEGVKAKVKRLLLDDCHLHTIIRLPNGVFAPYTSIKTNLLFFTKGKPTDIIWFYEHRYPAGVKNYSKTKPLRVEEFEPIAAWWGSESDGFAARTESEQAWKIDFKTLKQEAEAKAKPHWDAREQQSIGDRHFWPIYNLNISNPNTAEEEIHDADKLLAKYKALLGEIDTTQSKLKAELAAALAHHSDSPEFA |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 2 | 3300003775 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 | Metagenome | Endosphere |
| 3 | 3300003781 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 | Metagenome | Endosphere |
| 4 | 3300003790 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 | Metagenome | Endosphere |
| 5 | 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Metagenome | Rhizosphere |
| 6 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 7 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 8 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 9 | 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 11 | 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Metagenome | Rhizosphere |
| 12 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 14 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 15 | 3300006048 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 | Metagenome | Endosphere |
| 16 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 17 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 18 | 3300006944 | Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW | Metagenome | Nodule |
| 19 | 3300006946 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG | Metagenome | Nodule |
| 20 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 21 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 22 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 23 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 24 | 3300021320 | Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 | Metagenome | Nodule |
| 25 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 26 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 27 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 28 | 3300025299 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 29 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 30 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 32 | 3300027111 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) | Metagenome | Nodule |
| 33 | 3300027296 | Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) | Metagenome | Nodule |
| 34 | 3300027361 | Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) | Metagenome | Nodule |
| 35 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 37 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 38 | 3300030522 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM | Metagenome | Unclassified |
| 39 | 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Metagenome | Rhizosphere |
| 40 | 3300031242 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG | Metagenome | Rhizosphere |
| 41 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 42 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 43 | 3300031507 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM | Metagenome | Unclassified |
| 44 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 45 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 46 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 47 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 48 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 49 | 3300039093 | Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 | Metagenome | Unclassified |
| 50 | 3300042006 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 | Metagenome | Rhizosphere |
| 51 | 3300042438 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 | Metagenome | Rhizosphere |
| 52 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 53 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 54 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 55 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 56 | 3300046474 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere | Metagenome | Rhizosphere |
| 57 | 3300046501 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere | Metagenome | Rhizosphere |
| 58 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 59 | 3300046516 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere | Metagenome | Rhizosphere |
| 60 | 3300046524 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere | Metagenome | Rhizosphere |
| 61 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 62 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 63 | 3300046665 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere | Metagenome | Rhizosphere |
| 64 | 3300046692 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere | Metagenome | Rhizosphere |
| 65 | 3300046694 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere | Metagenome | Rhizosphere |
| 66 | 3300048088 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere | Metagenome | Rhizosphere |
| 67 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 68 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 69 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 70 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 71 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 72 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 73 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 74 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 75 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 76 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 77 | 3300050490 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation | Metagenome | Endosphere |
| 78 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 79 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 80 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 81 | 3300053109 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere | Metagenome | Endosphere |
| 82 | 3300053143 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere | Metagenome | Endosphere |
| 83 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 84 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 85 | 3300053161 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere | Metagenome | Endosphere |
| 86 | 2516653077 | Rhizobium acaciae WSM1481 | Isolate | Nodule |
| 87 | 2582581294 | Rhizobium sp. CF394 | Isolate | Rhizosphere |
| 88 | 2582581865 | Rhizobium sp. CF258 | Isolate | Rhizosphere |
| 89 | 2585427590 | Rhizobium sp. CF048 | Isolate | Rhizosphere |
| 90 | 2585427609 | Agrobacterium rhizogenes CF263 | Isolate | Rhizosphere |
| 91 | 2585428125 | Agrobacterium rhizogenes CF262 | Isolate | Rhizosphere |
| 92 | 2600255318 | Pseudomonas putida NFIX47 | Isolate | Rhizoplane |
| 93 | 2603880185 | Pseudomonas sp. NFIX46 | Isolate | Rhizoplane |
| 94 | 2603880199 | Pseudomonas sp. NFIX49 | Isolate | Rhizoplane |
| 95 | 2643221634 | Rhizobium sp. Root1203 | Isolate | Unclassified |
| 96 | 2643221637 | Rhizobium sp. Root1212 | Isolate | Unclassified |
| 97 | 2643221718 | Rhizobium sp. Root268 | Isolate | Unclassified |
| 98 | 2738541275 | Novosphingobium sp. GV027 | Isolate | Unclassified |
| 99 | 2738541301 | Novosphingobium sp. GV079 | Isolate | Unclassified |
| 100 | 2738541304 | Novosphingobium sp. GV061 | Isolate | Unclassified |
| 101 | 2738543022 | Novosphingobium sp. GV055 | Isolate | Unclassified |
| 102 | 2738543033 | Novosphingobium sp. GV064 | Isolate | Unclassified |
| 103 | 2791355264 | Rhizobium sp. S9 | Isolate | Nodule |
| 104 | 2802429637 | Rhizobium anhuiense C15 | Isolate | Nodule |
| 105 | 2842264693 | Rhizobium phaseoli SEMIA 487 | Isolate | Nodule |
| 106 | 2842311132 | Rhizobium phaseoli SEMIA 4002 | Isolate | Nodule |
| 107 | 2842428310 | Rhizobium phaseoli SEMIA 4050 | Isolate | Nodule |
| 108 | 2842434925 | Rhizobium esperanzae SEMIA 4051 | Isolate | Nodule |
| 109 | 2842441272 | Rhizobium esperanzae SEMIA 4053 | Isolate | Nodule |
| 110 | 2842462802 | Rhizobium phaseoli SEMIA 4057 | Isolate | Nodule |
| 111 | 2842469257 | Rhizobium phaseoli SEMIA 4058 | Isolate | Nodule |
| 112 | 2855020534 | Paracoccus endophyticus SYSUP0003 | Isolate | Stem Tuber |
| 113 | 2858800743 | Sinorhizobium meliloti AK170 | Isolate | Unclassified |
| 114 | 2899275550 | Paracoccus hibiscisoli CCTCC AB2016182 | Isolate | Rhizosphere |
| 115 | 2908446538 | Pseudomonas sp. R76 | Isolate | Rhizosphere |
| 116 | 2924754689 | Mesorhizobium sp. M5C.F.Ca.IN.020.32.2.1 | Isolate | Nodule |
| 117 | 2929138655 | Agrobacterium sp. R-72433 Hybrid assembly | Isolate | Unclassified |
| 118 | 2929624759 | Bradyrhizobium japonicum TXEA | Isolate | Nodule |
| 119 | 2937822353 | Mesorhizobium neociceri CCANP35 | Isolate | Nodule |
| 120 | 2937972304 | Mesorhizobium sp. M8A.F.Ca.ET.173.01.1.1 | Isolate | Nodule |
| 121 | 2970540015 | Mesorhizobium sp. M5C.F.Ca.IN.020.29.1.1 | Isolate | Nodule |
| 122 | 2996887358 | Rhizobium sp. R711 | Isolate | Nodule |
| 123 | 3005409236 | Rhizobium sp. P32RR-XVIII | Isolate | Rhizosphere |
| 124 | 8005321885 | Rhizobium sp. R72 | Isolate | Nodule |
| 125 | 8005497431 | Rhizobium phaseoli CCGM8 | Isolate | Unclassified |
| 126 | 8005668836 | Rhizobium phaseoli CCGM9 | Isolate | Unclassified |
| 127 | 8006933436 | Bradyrhizobium septentrionale 7(2017) | Isolate | Unclassified |
| 128 | 8006973647 | Bradyrhizobium septentrionale 162S2 | Isolate | Nodule |
| 129 | 8049293176 | Ensifer alkalisoli YIC4027 | Isolate | Nodule |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 69.44 |
| Metatranscriptomes | 0 |
| Isolates | 30.56 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 11.81 |
| Nodule | 17.36 |
| Rhizoplane | 3.47 |
| Rhizosphere | 50 |
| Stem | 0 |
| Stem Tuber | 0.69 |
| Unclassified | 0.69 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0307414_10000085 | 3300032004 | Bacteria | 86542 |
| 2 | Ga0055524_1002740 | 3300003775 | Bacteria | 8890 |
| 3 | Ga0055536_1000744 | 3300003781 | Bacteria | 21813 |
| 4 | Ga0055528_1000733 | 3300003790 | Bacteria | 23057 |
| 5 | Ga0070694_100012542 | 3300005444 | Bacteria | 5273 |
| 6 | Ga0070681_10128969 | 3300005458 | Bacteria | 2461 |
| 7 | Ga0070707_100000003 | 3300005468 | Bacteria | 270173 |
| 8 | Ga0070707_100000924 | 3300005468 | Bacteria | 29120 |
| 9 | Ga0070698_100006030 | 3300005471 | Bacteria | 13201 |
| 10 | Ga0070698_100020689 | 3300005471 | Bacteria | 6899 |
| 11 | Ga0070699_100001312 | 3300005518 | Bacteria | 22915 |
| 12 | Ga0070699_100046657 | 3300005518 | Bacteria | 3749 |
| 13 | Ga0070684_100076913 | 3300005535 | Bacteria | 2947 |
| 14 | Ga0070697_100091369 | 3300005536 | Bacteria | 2517 |
| 15 | Ga0070665_100011494 | 3300005548 | Bacteria | 8952 |
| 16 | Ga0068864_100053535 | 3300005618 | Bacteria | 3482 |
| 17 | Ga0081539_10004401 | 3300005985 | Bacteria | 15611 |
| 18 | Ga0075363_100008981 | 3300006048 | Bacteria | 4683 |
| 19 | Ga0075364_10000401 | 3300006051 | Bacteria | 21617 |
| 20 | Ga0075429_100017120 | 3300006880 | Bacteria | 6268 |
| 21 | Ga0099823_1021108 | 3300006944 | Bacteria | 6109 |
| 22 | Ga0079104_1000619 | 3300006946 | Bacteria | 34827 |
| 23 | Ga0105240_10058648 | 3300009093 | Bacteria | 4806 |
| 24 | Ga0114129_10000279 | 3300009147 | Bacteria | 58518 |
| 25 | Ga0157374_10004015 | 3300013296 | Bacteria | 12371 |
| 26 | Ga0163162_10093094 | 3300013306 | Bacteria | 3098 |
| 27 | Ga0214544_1004821 | 3300021320 | Bacteria | 26704 |
| 28 | Ga0209673_1001416 | 3300025273 | Bacteria | 23109 |
| 29 | Ga0209673_1002298 | 3300025273 | Bacteria | 13611 |
| 30 | Ga0209676_1001117 | 3300025292 | Bacteria | 29720 |
| 31 | Ga0209564_1004467 | 3300025295 | Bacteria | 8545 |
| 32 | Ga0209256_1001014 | 3300025299 | Bacteria | 33145 |
| 33 | Ga0207707_10028299 | 3300025912 | Bacteria | 4899 |
| 34 | Ga0207695_10042214 | 3300025913 | Bacteria | 4874 |
| 35 | Ga0207646_10000008 | 3300025922 | Bacteria | 457143 |
| 36 | Ga0207646_10000009 | 3300025922 | Bacteria | 453146 |
| 37 | Ga0207646_10001374 | 3300025922 | Bacteria | 30179 |
| 38 | Ga0209281_1000465 | 3300027111 | Bacteria | 57106 |
| 39 | Ga0209389_1000291 | 3300027296 | Bacteria | 31208 |
| 40 | Ga0209489_103380 | 3300027361 | Bacteria | 31208 |
| 41 | Ga0268266_10004962 | 3300028379 | Bacteria | 12594 |
| 42 | Ga0307515_10032026 | 3300028794 | Bacteria | 8732 |
| 43 | Ga0265338_10091023 | 3300028800 | Unclassified | 2522 |
| 44 | Ga0307512_10048829 | 3300030522 | Bacteria | 3421 |
| 45 | Ga0265330_10000441 | 3300031235 | Bacteria | 27740 |
| 46 | Ga0265330_10000655 | 3300031235 | Bacteria | 22241 |
| 47 | Ga0265329_10000142 | 3300031242 | Bacteria | 34860 |
| 48 | Ga0265339_10041239 | 3300031249 | Bacteria | 2563 |
| 49 | Ga0265316_10001148 | 3300031344 | Bacteria | 28698 |
| 50 | Ga0307509_10020368 | 3300031507 | Bacteria | 7527 |
| 51 | Ga0307408_100010248 | 3300031548 | Bacteria | 6182 |
| 52 | Ga0265313_10008455 | 3300031595 | Bacteria | 6829 |
| 53 | Ga0265342_10035280 | 3300031712 | Bacteria | 3062 |
| 54 | Ga0373927_0000795 | 3300035695 | Bacteria | 24089 |
| 55 | Ga0373925_0005111 | 3300037068 | Bacteria | 9824 |
| 56 | Ga0400489_58113 | 3300039093 | Bacteria | 26827 |
| 57 | Ga0439432_001850 | 3300042006 | Bacteria | 7944 |
| 58 | Ga0439459_0000276 | 3300042438 | Bacteria | 6043 |
| 59 | Ga0451577_0001019 | 3300042876 | Bacteria | 40710 |
| 60 | Ga0451577_0009760 | 3300042876 | Bacteria | 9203 |
| 61 | Ga0466969_0000976 | 3300044656 | Bacteria | 15405 |
| 62 | Ga0466969_0033730 | 3300044656 | Bacteria | 2597 |
| 63 | Ga0453684_0002543 | 3300044712 | Bacteria | 43893 |
| 64 | Ga0453684_0005152 | 3300044712 | Bacteria | 26296 |
| 65 | Ga0453684_0006548 | 3300044712 | Bacteria | 22060 |
| 66 | Ga0453684_0007072 | 3300044712 | Bacteria | 20965 |
| 67 | Ga0453684_0024199 | 3300044712 | Bacteria | 8892 |
| 68 | Ga0453684_0026311 | 3300044712 | Bacteria | 8412 |
| 69 | Ga0451576_0031747 | 3300045051 | Bacteria | 5630 |
| 70 | Ga0451576_0069585 | 3300045051 | Bacteria | 3663 |
| 71 | Ga0495605_0027092 | 3300046474 | Bacteria | 2973 |
| 72 | Ga0495607_0026082 | 3300046501 | Bacteria | 3627 |
| 73 | Ga0495583_0002501 | 3300046506 | Bacteria | 15583 |
| 74 | Ga0495628_0067769 | 3300046516 | Bacteria | 2786 |
| 75 | Ga0495648_0000356 | 3300046524 | Bacteria | 50394 |
| 76 | Ga0495633_0025586 | 3300046558 | Bacteria | 2904 |
| 77 | Ga0495668_0000398 | 3300046616 | Bacteria | 57103 |
| 78 | Ga0495661_0001531 | 3300046665 | Bacteria | 19184 |
| 79 | Ga0495671_0000676 | 3300046692 | Bacteria | 24613 |
| 80 | Ga0495649_0002979 | 3300046694 | Bacteria | 11662 |
| 81 | Ga0495602_0129638 | 3300048088 | Bacteria | 2014 |
| 82 | Ga0496104_0003979 | 3300048907 | Bacteria | 12797 |
| 83 | Ga0496115_0001091 | 3300048918 | Bacteria | 19625 |
| 84 | Ga0496118_0007005 | 3300048921 | Bacteria | 12143 |
| 85 | Ga0496121_0022244 | 3300048924 | Bacteria | 6166 |
| 86 | Ga0496122_0008387 | 3300048925 | Bacteria | 11165 |
| 87 | Ga0496123_0004369 | 3300048926 | Bacteria | 14922 |
| 88 | Ga0496124_0006535 | 3300048927 | Bacteria | 12682 |
| 89 | Ga0496125_0007722 | 3300048928 | Bacteria | 11392 |
| 90 | Ga0496126_0017689 | 3300048929 | Bacteria | 7100 |
| 91 | Ga0501039_0011965 | 3300049575 | Bacteria | 6613 |
| 92 | nmdc:mga03n38_4343_c1 | 3300050490 | Bacteria | 4682 |
| 93 | nmdc:mga00v17_10_c2 | 3300050491 | Bacteria | 136802 |
| 94 | nmdc:mga05p37_3972_c2 | 3300050507 | Bacteria | 8427 |
| 95 | nmdc:mga09592_14023_c1 | 3300050508 | Bacteria | 6543 |
| 96 | Ga0500569_001178 | 3300053109 | Bacteria | 4834 |
| 97 | Ga0500579_015442 | 3300053143 | Bacteria | 4915 |
| 98 | Ga0500616_0000042 | 3300053153 | Bacteria | 351293 |
| 99 | Ga0500622_0000080 | 3300053156 | Bacteria | 102519 |
| 100 | Ga0500634_0000203 | 3300053161 | Bacteria | 19145 |
| 101 | 2517039427 | 2516653077 | Bacteria | 7555578 |
| 102 | 2585201476 | 2582581294 | Bacteria | 6626667 |
| 103 | 2585388144 | 2582581865 | Bacteria | 6644329 |
| 104 | 2585818766 | 2585427590 | Bacteria | 6824633 |
| 105 | 2585903647 | 2585427609 | Bacteria | 6667127 |
| 106 | 2587981234 | 2585428125 | Bacteria | 6662905 |
| 107 | 2601800866 | 2600255318 | Bacteria | 6383414 |
| 108 | 2606074935 | 2603880185 | Bacteria | 6379190 |
| 109 | 2606127799 | 2603880199 | Bacteria | 6377649 |
| 110 | 2644191726 | 2643221634 | Bacteria | 6705461 |
| 111 | 2644209603 | 2643221637 | Bacteria | 5345260 |
| 112 | 2644653131 | 2643221718 | Bacteria | 5345506 |
| 113 | 2738712260 | 2738541275 | Bacteria | 4830863 |
| 114 | 2738850685 | 2738541301 | Bacteria | 4834102 |
| 115 | 2738866414 | 2738541304 | Bacteria | 4833665 |
| 116 | 2739298932 | 2738543022 | Bacteria | 4835059 |
| 117 | 2739360610 | 2738543033 | Bacteria | 4833336 |
| 118 | 2793349396 | 2791355264 | Bacteria | 6429314 |
| 119 | 2806075565 | 2802429637 | Bacteria | 7067217 |
| 120 | 2842270325 | 2842264693 | Bacteria | 6472963 |
| 121 | 2842317475 | 2842311132 | Bacteria | 6616990 |
| 122 | 2842434147 | 2842428310 | Bacteria | 6767288 |
| 123 | 2842441153 | 2842434925 | Bacteria | 6502746 |
| 124 | 2842447166 | 2842441272 | Bacteria | 6769273 |
| 125 | 2842468599 | 2842462802 | Bacteria | 6588055 |
| 126 | 2842475084 | 2842469257 | Bacteria | 6752936 |
| 127 | 2855022225 | 2855020534 | Bacteria | 3204685 |
| 128 | 2858803665 | 2858800743 | Bacteria | 6603254 |
| 129 | 2899277187 | 2899275550 | Bacteria | 3958688 |
| 130 | 2908452694 | 2908446538 | Bacteria | 6829095 |
| 131 | 2924759848 | 2924754689 | Bacteria | 6774424 |
| 132 | 2929139175 | 2929138655 | Bacteria | 5810547 |
| 133 | 2929626832 | 2929624759 | Bacteria | 9339455 |
| 134 | 2937826469 | 2937822353 | Bacteria | 7290551 |
| 135 | 2937975659 | 2937972304 | Bacteria | 7532020 |
| 136 | 2970543345 | 2970540015 | Bacteria | 6977556 |
| 137 | 2996890394 | 2996887358 | Bacteria | 5795980 |
| 138 | 3005411668 | 3005409236 | Bacteria | 7188837 |
| 139 | 8005324921 | 8005321885 | Bacteria | 5795980 |
| 140 | 8005498950 | 8005497431 | Bacteria | 6477605 |
| 141 | 8005670364 | 8005668836 | Bacteria | 6953162 |
| 142 | 8006936579 | 8006933436 | Bacteria | 10410654 |
| 143 | 8006976537 | 8006973647 | Bacteria | 10679141 |
| 144 | 8049296263 | 8049293176 | Bacteria | 6128433 |
| 145 | Ga0307414_10000085 | |||
| 146 | Ga0055524_1002740 | |||
| 147 | Ga0055536_1000744 | |||
| 148 | Ga0055528_1000733 | |||
| 149 | Ga0070694_100012542 | |||
| 150 | Ga0070681_10128969 | |||
| 151 | Ga0070707_100000003 | |||
| 152 | Ga0070707_100000924 | |||
| 153 | Ga0070698_100006030 | |||
| 154 | Ga0070698_100020689 | |||
| 155 | Ga0070699_100001312 | |||
| 156 | Ga0070699_100046657 | |||
| 157 | Ga0070684_100076913 | |||
| 158 | Ga0070697_100091369 | |||
| 159 | Ga0070665_100011494 | |||
| 160 | Ga0068864_100053535 | |||
| 161 | Ga0081539_10004401 | |||
| 162 | Ga0075363_100008981 | |||
| 163 | Ga0075364_10000401 | |||
| 164 | Ga0075429_100017120 | |||
| 165 | Ga0099823_1021108 | |||
| 166 | Ga0079104_1000619 | |||
| 167 | Ga0105240_10058648 | |||
| 168 | Ga0114129_10000279 | |||
| 169 | Ga0157374_10004015 | |||
| 170 | Ga0163162_10093094 | |||
| 171 | Ga0214544_1004821 | |||
| 172 | Ga0209673_1001416 | |||
| 173 | Ga0209673_1002298 | |||
| 174 | Ga0209676_1001117 | |||
| 175 | Ga0209564_1004467 | |||
| 176 | Ga0209256_1001014 | |||
| 177 | Ga0207707_10028299 | |||
| 178 | Ga0207695_10042214 | |||
| 179 | Ga0207646_10000008 | |||
| 180 | Ga0207646_10000009 | |||
| 181 | Ga0207646_10001374 | |||
| 182 | Ga0209281_1000465 | |||
| 183 | Ga0209389_1000291 | |||
| 184 | Ga0209489_103380 | |||
| 185 | Ga0268266_10004962 | |||
| 186 | Ga0307515_10032026 | |||
| 187 | Ga0265338_10091023 | |||
| 188 | Ga0307512_10048829 | |||
| 189 | Ga0265330_10000441 | |||
| 190 | Ga0265330_10000655 | |||
| 191 | Ga0265329_10000142 | |||
| 192 | Ga0265339_10041239 | |||
| 193 | Ga0265316_10001148 | |||
| 194 | Ga0307509_10020368 | |||
| 195 | Ga0307408_100010248 | |||
| 196 | Ga0265313_10008455 | |||
| 197 | Ga0265342_10035280 | |||
| 198 | Ga0373927_0000795 | |||
| 199 | Ga0373925_0005111 | |||
| 200 | Ga0400489_58113 | |||
| 201 | Ga0439432_001850 | |||
| 202 | Ga0439459_0000276 | |||
| 203 | Ga0451577_0001019 | |||
| 204 | Ga0451577_0009760 | |||
| 205 | Ga0466969_0000976 | |||
| 206 | Ga0466969_0033730 | |||
| 207 | Ga0453684_0002543 | |||
| 208 | Ga0453684_0005152 | |||
| 209 | Ga0453684_0006548 | |||
| 210 | Ga0453684_0007072 | |||
| 211 | Ga0453684_0024199 | |||
| 212 | Ga0453684_0026311 | |||
| 213 | Ga0451576_0031747 | |||
| 214 | Ga0451576_0069585 | |||
| 215 | Ga0495605_0027092 | |||
| 216 | Ga0495607_0026082 | |||
| 217 | Ga0495583_0002501 | |||
| 218 | Ga0495628_0067769 | |||
| 219 | Ga0495648_0000356 | |||
| 220 | Ga0495633_0025586 | |||
| 221 | Ga0495668_0000398 | |||
| 222 | Ga0495661_0001531 | |||
| 223 | Ga0495671_0000676 | |||
| 224 | Ga0495649_0002979 | |||
| 225 | Ga0495602_0129638 | |||
| 226 | Ga0496104_0003979 | |||
| 227 | Ga0496115_0001091 | |||
| 228 | Ga0496118_0007005 | |||
| 229 | Ga0496121_0022244 | |||
| 230 | Ga0496122_0008387 | |||
| 231 | Ga0496123_0004369 | |||
| 232 | Ga0496124_0006535 | |||
| 233 | Ga0496125_0007722 | |||
| 234 | Ga0496126_0017689 | |||
| 235 | Ga0501039_0011965 | |||
| 236 | nmdc:mga03n38_4343_c1 | |||
| 237 | nmdc:mga00v17_10_c2 | |||
| 238 | nmdc:mga05p37_3972_c2 | |||
| 239 | nmdc:mga09592_14023_c1 | |||
| 240 | Ga0500569_001178 | |||
| 241 | Ga0500579_015442 | |||
| 242 | Ga0500616_0000042 | |||
| 243 | Ga0500622_0000080 | |||
| 244 | Ga0500634_0000203 | |||
| 245 | 2517039427 | |||
| 246 | 2585201476 | |||
| 247 | 2585388144 | |||
| 248 | 2585818766 | |||
| 249 | 2585903647 | |||
| 250 | 2587981234 | |||
| 251 | 2601800866 | |||
| 252 | 2606074935 | |||
| 253 | 2606127799 | |||
| 254 | 2644191726 | |||
| 255 | 2644209603 | |||
| 256 | 2644653131 | |||
| 257 | 2738712260 | |||
| 258 | 2738850685 | |||
| 259 | 2738866414 | |||
| 260 | 2739298932 | |||
| 261 | 2739360610 | |||
| 262 | 2793349396 | |||
| 263 | 2806075565 | |||
| 264 | 2842270325 | |||
| 265 | 2842317475 | |||
| 266 | 2842434147 | |||
| 267 | 2842441153 | |||
| 268 | 2842447166 | |||
| 269 | 2842468599 | |||
| 270 | 2842475084 | |||
| 271 | 2855022225 | |||
| 272 | 2858803665 | |||
| 273 | 2899277187 | |||
| 274 | 2908452694 | |||
| 275 | 2924759848 | |||
| 276 | 2929139175 | |||
| 277 | 2929626832 | |||
| 278 | 2937826469 | |||
| 279 | 2937975659 | |||
| 280 | 2970543345 | |||
| 281 | 2996890394 | |||
| 282 | 3005411668 | |||
| 283 | 8005324921 | |||
| 284 | 8005498950 | |||
| 285 | 8005670364 | |||
| 286 | 8006936579 | |||
| 287 | 8006976537 | |||
| 288 | 8049296263 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3ufb-assembly1.cif.gz_A | crystal structure of a modification subunit of a putative type i restriction enzyme from vibrio vulnificus yj016 | 0.8587 | 1 | 438 |
| 2okc-assembly2.cif.gz_B | crystal structure of type i restriction enzyme stysji m protein (np_813429.1) from bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution | 0.8515 | 11 | 429 |
| 2okc-assembly1.cif.gz_A | crystal structure of type i restriction enzyme stysji m protein (np_813429.1) from bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution | 0.8401 | 10 | 429 |
| 5ybb-assembly1.cif.gz_B | structural basis underlying complex assembly andconformational transition of the type i r-m system | 0.8146 | 2 | 465 |
| 7eew-assembly1.cif.gz_A-2 | crystal structure of the intact mtase from vibrio vulnificus yj016 in complex with the dna-mimicking ocr protein and the s-adenosyl-l-homocysteine (sah) | 0.8015 | 1 | 453 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 3ufbA02 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 | 0.8995 | 124 | 438 | 3.40.50.150 |
| af_P08957_150_472_3.40.50.150 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 | 0.8836 | 152 | 428 | 3.40.50.150 |
| 3ufbA02 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 | 0.8703 | 124 | 438 | 3.40.50.150 |
| 2okcB02 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 | 0.8619 | 129 | 429 | 3.40.50.150 |
| 2okcB02 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 | 0.8481 | 129 | 429 | 3.40.50.150 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-X6DEK8-F1-model_v4 | site-specific DNA-methyltransferase (adenine-specific) (EC 2.1.1.72) | 0.9957 | 158 | 418 |
GO:0003677
GO:0004519 GO:0008170 GO:0009007 GO:0009307 GO:0032259 |
| AF-X6DEK8-F1-model_v4 | site-specific DNA-methyltransferase (adenine-specific) (EC 2.1.1.72) | 0.9807 | 158 | 418 |
GO:0003677
GO:0004519 GO:0008170 GO:0009007 GO:0009307 GO:0032259 |
| AF-A0A7H4NRT1-F1-model_v4 | deleted | 0.9764 | 162 | 384 |
|
| AF-A0A0E3L3J2-F1-model_v4 | site-specific DNA-methyltransferase (adenine-specific) (EC 2.1.1.72) | 0.9703 | 162 | 445 |
GO:0003677
GO:0008170 GO:0009007 GO:0009307 GO:0032259 |
| AF-A0A7Y0X960-F1-model_v4 | site-specific DNA-methyltransferase (adenine-specific) (EC 2.1.1.72) | 0.9626 | 327 | 430 |
GO:0003677
GO:0008170 GO:0009307 GO:0032259 |