F191245

General Info

Members Datasets Scaffolds Average Seq Length
144 114 135 459

Family's Representative Sequence

Representative Sequence 3300005842|Ga0068858_100000690|Ga0068858_1000006901
Length 509
Sequence LTTDIRQPLAPNPTDQDLRRLLAAQRAAFQREGPPSTAMRRDRIDRLTLALLDSTDDLTAALSADFGNRPEYASLAMDIGGVLIFIQALSNQFESWMRDEVVAGSAARGMPTVLQHRPKGVVGVIGPWNFPVSLVVQPAAEALAAGNRVMIKFSHLPERTAEVFAAAVAAHLDPDEVTVIRGGLDTARAFSTLAFDHIFFTGSAAVGRQVAATAGANLVPVTLGLGGKNPAIVAADADLAAAAERIAANRLINGGQVCLCPDYALVPADRLDAFVDAYRDAVRHIFPTYLANPDVTTIVNDARYRRVIGLVEDAVAKGATAITMVAEDERDRLPDPATRRIPPTVLLGVTDDMAVADEEIFGPVIAVLPYDDVDAAIHHVTARPHPLVAYWYGEDSPDYQEFLRRSNSGGVDRNDIALHMLVAGVPFGGIGPSGMGYYHGRAGFDTFTHQRAITTTTLPYAVASTLVPPFPEETRTAARDGVQAALEHLRASRADGLSAQRVSGGARPV

Samples

Sample ID Description Type Environment
1 2738541302 Pedobacter sp. CF074 Isolate Unclassified
2 2738543023 Pedobacter sp. OK628 Isolate Unclassified
3 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
4 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
5 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified
6 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
7 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
8 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
9 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
10 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
11 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
12 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
13 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
14 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
15 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
16 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
17 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
18 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
19 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
20 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
21 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
22 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
23 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
24 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
25 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
28 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
29 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
46 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
47 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
48 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
49 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
50 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
52 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
53 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
56 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
57 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
58 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
60 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
73 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
74 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
75 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
76 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
77 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
78 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
79 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
80 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
81 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
82 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
83 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
84 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
85 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
86 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
87 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
88 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
89 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
90 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
91 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
92 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
93 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
94 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
98 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
99 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
100 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
101 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
102 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
103 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
104 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
105 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
106 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
107 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
108 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
109 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
110 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
111 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
112 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
113 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
114 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.75
Metatranscriptomes 0
Isolates 6.25

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 23.61
Nodule 0
Rhizoplane 0.69
Rhizosphere 58.33
Stem 0
Stem Tuber 0
Unclassified 17.36

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25157J39369_1002951 3300002741 Bacteria 3756
2 JGI25153J46596_10005693 3300003215 Bacteria 6500
3 JGI25153J46596_10007921 3300003215 Bacteria 5152
4 rootH2_10111494 3300003320 Bacteria 4729
5 rootH2_10124665 3300003320 Bacteria 5502
6 rootH2_10238029 3300003320 Bacteria 2872
7 JGI25160J50197_1000654 3300003354 Bacteria 19262
8 JGI25160J50197_1006469 3300003354 Bacteria 4738
9 Ga0055542_1001943 3300003762 Bacteria 8062
10 Ga0055526_1018266 3300003771 Bacteria 2626
11 Ga0055528_1000644 3300003790 Bacteria 25583
12 Ga0055530_10000697 3300003791 Bacteria 28349
13 Ga0055531_10000005 3300003794 Bacteria 242179
14 Ga0065165_1000042 3300005262 Bacteria 203874
15 Ga0065165_1016088 3300005262 Bacteria 2817
16 Ga0065714_10005977 3300005288 Bacteria 11332
17 Ga0065714_10064535 3300005288 Bacteria 40118
18 Ga0068869_100048554 3300005334 Unclassified 3070
19 Ga0070682_100000019 3300005337 Bacteria 220844
20 Ga0070669_100012193 3300005353 Bacteria 6101
21 Ga0070671_100031487 3300005355 Bacteria 4382
22 Ga0070671_100087401 3300005355 Bacteria 2609
23 Ga0070673_100018331 3300005364 Bacteria 4996
24 Ga0070667_100024202 3300005367 Bacteria 5044
25 Ga0070679_100011927 3300005530 Bacteria 8295
26 Ga0068853_100003680 3300005539 Bacteria 11761
27 Ga0068853_100007045 3300005539 Bacteria 8988
28 Ga0068852_100025258 3300005616 Bacteria 4811
29 Ga0068859_100052239 3300005617 Unclassified 4109
30 Ga0068858_100000690 3300005842 Bacteria 35241
31 Ga0068860_100005358 3300005843 Bacteria 13015
32 Ga0068862_100007543 3300005844 Bacteria 9016
33 Ga0097621_100000257 3300006237 Bacteria 35856
34 Ga0068871_100000459 3300006358 Bacteria 27963
35 Ga0097620_100052238 3300006931 Unclassified 4109
36 Ga0105248_10127102 3300009177 Bacteria 2875
37 Ga0157373_10017127 3300013100 Bacteria 5277
38 Ga0157371_10000286 3300013102 Bacteria 68502
39 Ga0157371_10071552 3300013102 Bacteria 2455
40 Ga0157370_10038297 3300013104 Bacteria 4638
41 Ga0157374_10003783 3300013296 Bacteria 12734
42 Ga0163162_10000011 3300013306 Bacteria 299877
43 Ga0163162_10000157 3300013306 Bacteria 62611
44 Ga0157372_10039380 3300013307 Bacteria 5216
45 Ga0157375_10000462 3300013308 Bacteria 37001
46 Ga0163163_10001451 3300014325 Bacteria 20027
47 Ga0163163_10100103 3300014325 Bacteria 2920
48 Ga0157379_10001796 3300014968 Bacteria 17692
49 Ga0157379_10047655 3300014968 Bacteria 3823
50 Ga0157376_10001262 3300014969 Bacteria 16652
51 Ga0182006_1001292 3300015261 Bacteria 15437
52 Ga0213876_10000680 3300021384 Bacteria 24189
53 Ga0209436_100168 3300025208 Bacteria 31320
54 Ga0209258_100029 3300025242 Bacteria 490648
55 Ga0209646_1000031 3300025246 Bacteria 381260
56 Ga0209026_1000019 3300025250 Bacteria 381260
57 Ga0209148_1000194 3300025254 Bacteria 112740
58 Ga0209673_1000684 3300025273 Bacteria 48675
59 Ga0209130_1007008 3300025284 Bacteria 3554
60 Ga0209564_1002836 3300025295 Bacteria 12788
61 Ga0209758_1009594 3300025297 Bacteria 5978
62 Ga0209758_1012683 3300025297 Bacteria 4684
63 Ga0209050_1000185 3300025298 Bacteria 141889
64 Ga0207426_1000024 3300025302 Bacteria 534075
65 Ga0207426_1000445 3300025302 Bacteria 66319
66 Ga0207426_1000897 3300025302 Bacteria 30070
67 Ga0209257_1000004 3300025304 Bacteria 1678347
68 Ga0209257_1001827 3300025304 Bacteria 23272
69 Ga0207657_10034496 3300025919 Bacteria 4549
70 Ga0207652_10001660 3300025921 Bacteria 19504
71 Ga0207644_10039891 3300025931 Bacteria 3316
72 Ga0207689_10059576 3300025942 Bacteria 3140
73 Ga0207658_10009113 3300025986 Bacteria 6733
74 Ga0207703_10000025 3300026035 Bacteria 214692
75 Ga0207639_10002871 3300026041 Bacteria 11570
76 Ga0207639_10009075 3300026041 Bacteria 6850
77 Ga0207648_10070373 3300026089 Unclassified 3050
78 Ga0207676_10047600 3300026095 Bacteria 3325
79 Ga0207698_10001293 3300026142 Bacteria 14587
80 Ga0209974_10001052 3300027876 Bacteria 9786
81 Ga0307517_10085076 3300028786 Bacteria 2654
82 Ga0307515_10000282 3300028794 Bacteria 125216
83 Ga0307515_10177224 3300028794 Unclassified 2097
84 Ga0265327_10000013 3300031251 Bacteria 519549
85 Ga0265327_10031958 3300031251 Bacteria 2952
86 Ga0307513_10006752 3300031456 Bacteria 14966
87 Ga0307509_10001779 3300031507 Bacteria 35792
88 Ga0307514_10001530 3300031649 Bacteria 27605
89 Ga0307405_10000045 3300031731 Bacteria 71537
90 Ga0307412_10188699 3300031911 Bacteria 1557
91 Ga0307510_10032378 3300033180 Bacteria 5890
92 Ga0373955_0001712 3300035172 Bacteria 9385
93 Ga0373937_0000084 3300036401 Bacteria 87712
94 Ga0373937_0085584 3300036401 Bacteria 2917
95 Ga0439449_0016204 3300042007 Bacteria 2802
96 Ga0450918_000056 3300042531 Bacteria 22747
97 Ga0451577_0008713 3300042876 Bacteria 9834
98 Ga0453684_0001035 3300044712 Bacteria 88955
99 Ga0453684_0095327 3300044712 Bacteria 3658
100 Ga0466959_0103700 3300045049 Bacteria 2034
101 Ga0495592_0000387 3300046454 Bacteria 34389
102 Ga0495633_0000036 3300046558 Bacteria 184999
103 Ga0495672_0012399 3300047320 Bacteria 5951
104 Ga0496114_0105535 3300048917 Bacteria 2410
105 Ga0496121_0000082 3300048924 Bacteria 228557
106 Ga0496121_0012083 3300048924 Bacteria 9488
107 Ga0496126_0015027 3300048929 Bacteria 7803
108 Ga0501033_0001462 3300049570 Bacteria 20947
109 Ga0501034_0004394 3300049571 Bacteria 15701
110 Ga0501047_0022656 3300049581 Bacteria 6031
111 Ga0501047_0149433 3300049581 Bacteria 2213
112 Ga0501068_0002594 3300049584 Bacteria 9582
113 Ga0501068_0134877 3300049584 Bacteria 1545
114 Ga0501069_0001820 3300049585 Bacteria 10635
115 Ga0501069_0078490 3300049585 Bacteria 1857
116 Ga0501070_0001618 3300049586 Bacteria 19978
117 Ga0501070_0136396 3300049586 Bacteria 2026
118 Ga0501073_0000240 3300049589 Bacteria 36158
119 Ga0501073_0000600 3300049589 Bacteria 25383
120 Ga0501074_0008853 3300049590 Bacteria 7295
121 Ga0501080_0019960 3300049742 Bacteria 6203
122 Ga0501080_0105589 3300049742 Bacteria 2611
123 Ga0501080_0119986 3300049742 Bacteria 2437
124 Ga0501083_0008133 3300049744 Bacteria 7419
125 Ga0501083_0012261 3300049744 Bacteria 5998
126 nmdc:mga03683_14267_c1 3300050489 Bacteria 2938
127 nmdc:mga00v17_71499_c1 3300050491 Bacteria 2150
128 nmdc:mga0k408_33786_c1 3300050493 Bacteria 2927
129 nmdc:mga06z11_14801_c1 3300050494 Bacteria 3464
130 nmdc:mga07m45_18855_c1 3300050496 Bacteria 3732
131 Ga0500566_0001994 3300053094 Bacteria 12045
132 Ga0500568_0028987 3300053139 Bacteria 2303
133 Ga0500622_0000135 3300053156 Bacteria 78382
134 Ga0501084_0001748 3300054114 Bacteria 17260
135 Ga0500661_007576 3300055283 Unclassified 2005

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049742 Ga0501080_0119986 Ga0501080_0119986_1320_2423 364
2 3300044712 Ga0453684_0095327 Ga0453684_0095327_30_1163 376
3 3300049584 Ga0501068_0134877 Ga0501068_0134877_258_1529 403
4 3300003215 JGI25153J46596_10005693 JGI25153J46596_100056933 404
5 3300026095 Ga0207676_10047600 Ga0207676_100476002 416
6 3300014325 Ga0163163_10001451 Ga0163163_100014513 419
7 3300031911 Ga0307412_10188699 Ga0307412_101886991 421
8 3300049742 Ga0501080_0105589 Ga0501080_0105589_217_1611 424
9 3300049744 Ga0501083_0012261 Ga0501083_0012261_3736_5130 424
10 3300049571 Ga0501034_0004394 Ga0501034_0004394_6136_7512 426
11 3300049584 Ga0501068_0002594 Ga0501068_0002594_5655_7031 426
12 3300049586 Ga0501070_0136396 Ga0501070_0136396_36_1412 426
13 3300049589 Ga0501073_0000240 Ga0501073_0000240_30854_32230 426
14 3300049590 Ga0501074_0008853 Ga0501074_0008853_5873_7249 426
15 3300049742 Ga0501080_0019960 Ga0501080_0019960_1447_2823 426
16 3300049585 Ga0501069_0001820 Ga0501069_0001820_2145_3545 431
17 3300049586 Ga0501070_0001618 Ga0501070_0001618_2446_3846 431
18 3300049589 Ga0501073_0000600 Ga0501073_0000600_14357_15757 431
19 3300049744 Ga0501083_0008133 Ga0501083_0008133_1320_2720 431
20 3300049570 Ga0501033_0001462 Ga0501033_0001462_4220_5581 432
21 3300054114 Ga0501084_0001748 Ga0501084_0001748_5819_7219 435
22 3300028794 Ga0307515_10000282 Ga0307515_1000028286 438
23 3300031456 Ga0307513_10006752 Ga0307513_100067527 438
24 3300031649 Ga0307514_10001530 Ga0307514_1000153022 438
25 3300053094 Ga0500566_0001994 Ga0500566_0001994_6699_8063 439
26 3300005337 Ga0070682_100000019 Ga0070682_100000019157 447
27 3300031251 Ga0265327_10000013 Ga0265327_10000013295 447
28 3300036401 Ga0373937_0085584 Ga0373937_0085584_838_2244 447
29 3300005842 Ga0068858_100000690 Ga0068858_1000006901 452
30 3300014968 Ga0157379_10047655 Ga0157379_100476553 452
31 3300026035 Ga0207703_10000025 Ga0207703_1000002540 452
32 3300048924 Ga0496121_0012083 Ga0496121_0012083_660_2189 452
33 iso_pu_bacteria 2929239360 2929239833 452
34 iso_pu_bacteria 2929921140 2929921467 452
35 iso_pu_bacteria 8003151029 8003152013 452
36 3300005539 Ga0068853_100003680 Ga0068853_1000036805 453
37 3300005539 Ga0068853_100007045 Ga0068853_1000070456 453
38 3300026041 Ga0207639_10002871 Ga0207639_100028715 453
39 3300026041 Ga0207639_10009075 Ga0207639_100090754 453
40 3300042007 Ga0439449_0016204 Ga0439449_0016204_1147_2529 453
41 3300047320 Ga0495672_0012399 Ga0495672_0012399_2710_4074 453
42 iso_pu_bacteria 2738541302 2738852776 453
43 iso_pu_bacteria 2738543023 2739302957 453
44 iso_pu_bacteria 2842909656 2842910904 453
45 iso_pu_bacteria 2945997725 2945997988 453
46 3300013102 Ga0157371_10071552 Ga0157371_100715522 454
47 3300005288 Ga0065714_10005977 Ga0065714_100059773 455
48 3300005288 Ga0065714_10064535 Ga0065714_100645355 455
49 3300005364 Ga0070673_100018331 Ga0070673_1000183314 455
50 3300009177 Ga0105248_10127102 Ga0105248_101271022 455
51 3300013100 Ga0157373_10017127 Ga0157373_100171273 455
52 3300013102 Ga0157371_10000286 Ga0157371_100002865 455
53 3300013104 Ga0157370_10038297 Ga0157370_100382971 455
54 3300013296 Ga0157374_10003783 Ga0157374_1000378311 455
55 3300013306 Ga0163162_10000011 Ga0163162_10000011135 455
56 3300015261 Ga0182006_1001292 Ga0182006_10012929 455
57 3300025942 Ga0207689_10059576 Ga0207689_100595763 455
58 3300027876 Ga0209974_10001052 Ga0209974_100010529 455
59 3300028786 Ga0307517_10085076 Ga0307517_100850762 455
60 3300028794 Ga0307515_10177224 Ga0307515_101772242 455
61 3300031507 Ga0307509_10001779 Ga0307509_1000177910 455
62 3300031731 Ga0307405_10000045 Ga0307405_1000004549 455
63 3300033180 Ga0307510_10032378 Ga0307510_100323784 455
64 3300035172 Ga0373955_0001712 Ga0373955_0001712_7848_9272 455
65 3300036401 Ga0373937_0000084 Ga0373937_0000084_62492_63916 455
66 3300042531 Ga0450918_000056 Ga0450918_000056_13200_14636 455
67 3300042876 Ga0451577_0008713 Ga0451577_0008713_6226_7653 455
68 3300044712 Ga0453684_0001035 Ga0453684_0001035_51100_52527 455
69 3300046454 Ga0495592_0000387 Ga0495592_0000387_1410_2843 455
70 3300048917 Ga0496114_0105535 Ga0496114_0105535_435_1844 455
71 3300048924 Ga0496121_0000082 Ga0496121_0000082_186966_188333 455
72 3300049581 Ga0501047_0149433 Ga0501047_0149433_275_1660 455
73 3300049585 Ga0501069_0078490 Ga0501069_0078490_467_1846 455
74 3300050489 nmdc:mga03683_14267_c1 nmdc:mga03683_14267_c1_793_2241 455
75 3300050491 nmdc:mga00v17_71499_c1 nmdc:mga00v17_71499_c1_472_1908 455
76 3300050493 nmdc:mga0k408_33786_c1 nmdc:mga0k408_33786_c1_985_2433 455
77 3300050494 nmdc:mga06z11_14801_c1 nmdc:mga06z11_14801_c1_527_1975 455
78 3300050496 nmdc:mga07m45_18855_c1 nmdc:mga07m45_18855_c1_1033_2481 455
79 iso_pu_bacteria 2919704043 2919707868 455
80 3300002741 JGI25157J39369_1002951 JGI25157J39369_10029513 456
81 3300003215 JGI25153J46596_10007921 JGI25153J46596_100079212 456
82 3300003320 rootH2_10111494 rootH2_101114942 456
83 3300003320 rootH2_10124665 rootH2_101246653 456
84 3300003320 rootH2_10238029 rootH2_102380292 456
85 3300003354 JGI25160J50197_1000654 JGI25160J50197_10006543 456
86 3300003354 JGI25160J50197_1006469 JGI25160J50197_10064693 456
87 3300003762 Ga0055542_1001943 Ga0055542_10019432 456
88 3300003771 Ga0055526_1018266 Ga0055526_10182662 456
89 3300003790 Ga0055528_1000644 Ga0055528_100064416 456
90 3300003791 Ga0055530_10000697 Ga0055530_100006977 456
91 3300003794 Ga0055531_10000005 Ga0055531_1000000590 456
92 3300005262 Ga0065165_1000042 Ga0065165_1000042103 456
93 3300005262 Ga0065165_1016088 Ga0065165_10160882 456
94 3300005334 Ga0068869_100048554 Ga0068869_1000485542 456
95 3300005353 Ga0070669_100012193 Ga0070669_1000121932 456
96 3300005355 Ga0070671_100031487 Ga0070671_1000314872 456
97 3300005355 Ga0070671_100087401 Ga0070671_1000874012 456
98 3300005367 Ga0070667_100024202 Ga0070667_1000242026 456
99 3300005530 Ga0070679_100011927 Ga0070679_1000119272 456
100 3300005616 Ga0068852_100025258 Ga0068852_1000252582 456
101 3300005617 Ga0068859_100052239 Ga0068859_1000522393 456
102 3300005843 Ga0068860_100005358 Ga0068860_1000053583 456
103 3300005844 Ga0068862_100007543 Ga0068862_1000075432 456
104 3300006237 Ga0097621_100000257 Ga0097621_10000025724 456
105 3300006358 Ga0068871_100000459 Ga0068871_1000004592 456
106 3300006931 Ga0097620_100052238 Ga0097620_1000522383 456
107 3300013306 Ga0163162_10000157 Ga0163162_1000015713 456
108 3300013307 Ga0157372_10039380 Ga0157372_100393805 456
109 3300013308 Ga0157375_10000462 Ga0157375_1000046233 456
110 3300014325 Ga0163163_10100103 Ga0163163_101001031 456
111 3300014968 Ga0157379_10001796 Ga0157379_1000179615 456
112 3300014969 Ga0157376_10001262 Ga0157376_1000126213 456
113 3300021384 Ga0213876_10000680 Ga0213876_1000068015 456
114 3300025208 Ga0209436_100168 Ga0209436_1001687 456
115 3300025242 Ga0209258_100029 Ga0209258_100029316 456
116 3300025246 Ga0209646_1000031 Ga0209646_1000031144 456
117 3300025250 Ga0209026_1000019 Ga0209026_1000019144 456
118 3300025254 Ga0209148_1000194 Ga0209148_100019491 456
119 3300025273 Ga0209673_1000684 Ga0209673_10006845 456
120 3300025284 Ga0209130_1007008 Ga0209130_10070082 456
121 3300025295 Ga0209564_1002836 Ga0209564_10028365 456
122 3300025297 Ga0209758_1009594 Ga0209758_10095943 456
123 3300025297 Ga0209758_1012683 Ga0209758_10126833 456
124 3300025298 Ga0209050_1000185 Ga0209050_100018522 456
125 3300025302 Ga0207426_1000024 Ga0207426_1000024410 456
126 3300025302 Ga0207426_1000445 Ga0207426_10004456 456
127 3300025302 Ga0207426_1000897 Ga0207426_10008971 456
128 3300025304 Ga0209257_1000004 Ga0209257_1000004319 456
129 3300025304 Ga0209257_1001827 Ga0209257_100182710 456
130 3300025919 Ga0207657_10034496 Ga0207657_100344964 456
131 3300025921 Ga0207652_10001660 Ga0207652_1000166012 456
132 3300025931 Ga0207644_10039891 Ga0207644_100398912 456
133 3300025986 Ga0207658_10009113 Ga0207658_100091136 456
134 3300026089 Ga0207648_10070373 Ga0207648_100703732 456
135 3300026142 Ga0207698_10001293 Ga0207698_1000129310 456
136 3300031251 Ga0265327_10031958 Ga0265327_100319582 456
137 3300045049 Ga0466959_0103700 Ga0466959_0103700_619_2001 456
138 3300046558 Ga0495633_0000036 Ga0495633_0000036_73441_74937 456
139 3300048929 Ga0496126_0015027 Ga0496126_0015027_2662_4032 456
140 3300049581 Ga0501047_0022656 Ga0501047_0022656_3615_4994 456
141 3300053139 Ga0500568_0028987 Ga0500568_0028987_459_1829 456
142 3300053156 Ga0500622_0000135 Ga0500622_0000135_37534_38904 456
143 3300055283 Ga0500661_007576 Ga0500661_007576_179_1549 456
144 iso_pu_bacteria 2818991460 2819677212 456

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00171

Aldedh

Aldehyde dehydrogenase family

9

453

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4l1o-assembly1.cif.gz_A crystal structure of human aldh3a1 with inhibitor 1-{[4-(1,3-benzodioxol-5-ylmethyl)piperazin-1-yl]methyl}-1h-indole-2,3-dione 0.9746 1 443
1ad3-assembly1.cif.gz_B class 3 aldehyde dehydrogenase complex with nicotinamide-adenine-dinucleotide 0.9737 2 443
8bb8-assembly1.cif.gz_A crystal structure of human aldehyde dehydrogenase aldh3a1 in complex with octanal 0.9737 1 443
4qgk-assembly1.cif.gz_B structure of the human sjogren larsson syndrome enzyme fatty aldehyde dehydrogenase (faldh) 0.9723 2 455
5ucd-assembly1.cif.gz_B benzaldehyde dehydrogenase, a class 3 aldehyde dehydrogenase, with bound nadp+ and benzoate adduct 0.9722 3 432
ID Description Score Start End Superfamily
af_A0A2R8RIE8_244_439_3.40.309.10 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 2;Aldehyde Dehydrogenase; Chain A, domain 2 0.9877 214 406 3.40.309.10
af_Q2FWX9_214_408_3.40.309.10 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 2;Aldehyde Dehydrogenase; Chain A, domain 2 0.9871 214 406 3.40.309.10
af_Q54DG1_224_414_3.40.309.10 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 2;Aldehyde Dehydrogenase; Chain A, domain 2 0.9869 216 406 3.40.309.10
af_Q4DVV3_222_409_3.40.309.10 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 2;Aldehyde Dehydrogenase; Chain A, domain 2 0.9835 213 397 3.40.309.10
af_Q2FWX9_4_206_3.40.605.10 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 1;Aldehyde Dehydrogenase; Chain A, domain 1 0.9818 4 206 3.40.605.10
ID Description Score Start End GO Terms
AF-A0A3D3AFI7-F1-model_v4 Aldehyde dehydrogenase 0.9947 219 374 GO:0004029
GO:0005737
GO:0006081
AF-A0A1G0H214-F1-model_v4 Aldehyde dehydrogenase 0.9896 6 383 GO:0004029
GO:0005737
GO:0006081
AF-A0A4Q5VV64-F1-model_v4 deleted 0.9891 1 374
AF-A0A7Z0LGZ6-F1-model_v4 Aldehyde dehydrogenase family protein 0.9874 179 321 GO:0004029
GO:0005737
GO:0006081
AF-A0A6N6M826-F1-model_v4 Aldehyde dehydrogenase 0.9871 1 455 GO:0004029
GO:0005737
GO:0006081

Feature Viewer

pLDDT pTM Quality
95.28 0.93 High
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Predicted Structure (AlphaFold2)

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