F189039

General Info

Members Datasets Scaffolds Average Seq Length
143 120 286 303

Family's Representative Sequence

Representative Sequence 3300026095|Ga0207676_10348942|Ga0207676_103489421
Length 363
Sequence MHGIHLVGDLQGCKCSETLMLSCEAVEKLLVSECHAAGLTAVATRFYPFGTDDKPAGVTSHDVVDDIRRILHVRRVGHTGTLDPFATGVLVILIGRATRLAQFLSGVEKEYEAVIRLGYATDTGDLTGKPIGTNEEKSTLSGIAPGQWNRKQIEAALESLRGEIDQVPPMYSAKKQGGRRLYEMARRGEEVERKPVRVCIQKFEALKPSGDLLRDNRDGTFDFDVRVECSSGTYVRTLAEDFGKRLRVGAHLAELRRTRVGDFQIQHAQTLEQVKVGVAEEALGKVVLPTDAALSRFPGIDLTASDVRRVQNGMAVNISNAEWANGERVRMRDKQGNLIAVAEYDEASASLRPSVVIARDDTA

Samples

Sample ID Description Type Environment
1 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
17 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
20 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
22 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
25 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
30 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
31 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
32 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
33 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
44 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
45 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
46 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
47 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
48 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
49 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
50 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
51 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
52 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
53 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
54 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
55 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
56 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
57 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
58 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
59 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
60 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
61 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
62 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
63 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
64 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
65 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
66 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
67 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
68 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
69 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
70 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
71 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
72 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
73 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
74 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
75 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
76 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
77 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
78 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
79 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
80 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
81 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
82 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
83 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
84 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
85 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
86 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
87 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
88 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
89 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
90 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
91 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
103 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
104 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
105 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
106 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
108 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
109 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
110 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
111 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
112 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
113 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
114 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
115 2744054611 Aldersonia kunmingensis DSM 45001 Isolate Rhizosphere
116 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
117 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
118 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
119 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
120 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root

Type Distribution

Type Percentage (%)
Metagenomes 95.1
Metatranscriptomes 0
Isolates 4.9

Biome Distribution

Category Percentage (%)
Aerial Root 0.7
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.1
Rhizosphere 93.71
Stem 0
Stem Tuber 0.7
Unclassified 6.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207676_10348942 3300026095 Bacteria 1368
2 SwRhRL2b_contig_2327835 2162886007 Bacteria 1846
3 Ga0065707_10153027 3300005295 Bacteria 1638
4 Ga0068869_100041881 3300005334 Bacteria 3280
5 Ga0068869_100097152 3300005334 Bacteria 2224
6 Ga0070692_10134026 3300005345 Bacteria 1395
7 Ga0070714_100126140 3300005435 Bacteria 2282
8 Ga0070713_100135650 3300005436 Unclassified 2174
9 Ga0070711_100032140 3300005439 Bacteria 3487
10 Ga0070700_100117928 3300005441 Bacteria 1774
11 Ga0070708_100065906 3300005445 Bacteria 3249
12 Ga0070706_100000374 3300005467 Bacteria 53751
13 Ga0070706_100008184 3300005467 Bacteria 9756
14 Ga0070707_100011396 3300005468 Bacteria 8291
15 Ga0070698_100001565 3300005471 Bacteria 25413
16 Ga0070698_100346695 3300005471 Bacteria 1416
17 Ga0070697_100001188 3300005536 Bacteria 19721
18 Ga0068855_100042500 3300005563 Bacteria 5384
19 Ga0068852_100115165 3300005616 Bacteria 2451
20 Ga0068861_100227519 3300005719 Unclassified 1580
21 Ga0081455_10000025 3300005937 Bacteria 157583
22 Ga0081538_10000448 3300005981 Bacteria 46350
23 Ga0081539_10000846 3300005985 Bacteria 58555
24 Ga0075428_100000992 3300006844 Bacteria 30062
25 Ga0075428_100290233 3300006844 Bacteria 1759
26 Ga0075430_100003504 3300006846 Bacteria 13141
27 Ga0075431_100001995 3300006847 Bacteria 19457
28 Ga0075429_100000635 3300006880 Bacteria 27130
29 Ga0099794_10000613 3300007265 Bacteria 11864
30 Ga0111539_10073662 3300009094 Bacteria 4026
31 Ga0105243_10226842 3300009148 Bacteria 1655
32 Ga0105243_10392907 3300009148 Bacteria 1286
33 Ga0105248_10692071 3300009177 Bacteria 1150
34 Ga0157375_10160374 3300013308 Bacteria 2390
35 Ga0163163_10122785 3300014325 Bacteria 2632
36 Ga0157380_10311144 3300014326 Bacteria 1456
37 Ga0182008_10062353 3300014497 Bacteria 1838
38 Ga0207684_10005226 3300025910 Bacteria 12060
39 Ga0207684_10017882 3300025910 Bacteria 6076
40 Ga0207646_10002549 3300025922 Bacteria 21519
41 Ga0207650_10217848 3300025925 Bacteria 1535
42 Ga0207709_10076159 3300025935 Bacteria 2147
43 Ga0207669_10471314 3300025937 Bacteria 999
44 Ga0207689_10106154 3300025942 Bacteria 2308
45 Ga0207689_10130832 3300025942 Unclassified 2065
46 Ga0207667_10053327 3300025949 Unclassified 4256
47 Ga0207668_10121887 3300025972 Bacteria 1976
48 Ga0207675_100087256 3300026118 Bacteria 2930
49 Ga0209588_1001226 3300027671 Bacteria 6638
50 Ga0209588_1007907 3300027671 Unclassified 3144
51 Ga0316576_10032674 3300031727 Bacteria 3699
52 Ga0316576_10084389 3300031727 Bacteria 2360
53 Ga0307405_10049003 3300031731 Bacteria 2609
54 Ga0307413_10001954 3300031824 Bacteria 8188
55 Ga0307413_10069299 3300031824 Bacteria 2213
56 Ga0307410_10003531 3300031852 Bacteria 7862
57 Ga0307406_10000247 3300031901 Bacteria 32783
58 Ga0307406_10267093 3300031901 Bacteria 1298
59 Ga0307412_10189149 3300031911 Bacteria 1555
60 Ga0307409_100000087 3300031995 Bacteria 32874
61 Ga0307409_100195825 3300031995 Bacteria 1803
62 Ga0307416_100000079 3300032002 Bacteria 70731
63 Ga0307416_100023850 3300032002 Bacteria 4451
64 Ga0307414_10019184 3300032004 Bacteria 4232
65 Ga0307411_10188573 3300032005 Bacteria 1572
66 Ga0307415_100015968 3300032126 Bacteria 4460
67 Ga0307415_100028153 3300032126 Bacteria 3571
68 Ga0307415_100063597 3300032126 Bacteria 2564
69 Ga0316583_10014455 3300032133 Bacteria 2845
70 Ga0316574_0051626 3300035398 Bacteria 2563
71 Ga0316582_0105369 3300036647 Bacteria 1872
72 Ga0373925_0043477 3300037068 Bacteria 3335
73 Ga0436364_0337981 3300037853 Bacteria 2748
74 Ga0400483_122825 3300039062 Bacteria 1168
75 Ga0400483_189910 3300039062 Bacteria 2475
76 Ga0451807_0568453 3300041486 Bacteria 3677
77 Ga0451577_0008948 3300042876 Bacteria 9685
78 Ga0466972_0019749 3300044658 Bacteria 3369
79 Ga0453683_0012506 3300044673 Bacteria 5562
80 Ga0466963_0155216 3300044694 Bacteria 1591
81 Ga0453684_0764002 3300044712 Unclassified 1045
82 Ga0451576_0004550 3300045051 Bacteria 17955
83 Ga0451576_0049936 3300045051 Bacteria 4390
84 Ga0451576_0286963 3300045051 Bacteria 1721
85 Ga0466958_0028835 3300045836 Bacteria 3293
86 Ga0495592_0003587 3300046454 Bacteria 11157
87 Ga0495651_0001219 3300046462 Bacteria 19860
88 Ga0495653_0012181 3300046463 Bacteria 7016
89 Ga0495608_0008674 3300046511 Bacteria 7115
90 Ga0495618_0036951 3300046514 Unclassified 3065
91 Ga0495628_0000499 3300046516 Bacteria 35952
92 Ga0495630_0018068 3300046517 Bacteria 5175
93 Ga0495652_0003344 3300046529 Bacteria 15900
94 Ga0495587_0011371 3300046536 Bacteria 5641
95 Ga0495667_0001975 3300046559 Bacteria 13573
96 Ga0495657_0018389 3300046675 Bacteria 5061
97 Ga0495623_0046284 3300046679 Bacteria 2762
98 Ga0495600_0002962 3300046809 Bacteria 9902
99 Ga0495604_0001966 3300047317 Bacteria 16597
100 Ga0495636_0031998 3300047318 Bacteria 2157
101 Ga0495674_0012987 3300047319 Bacteria 7839
102 Ga0495674_0025407 3300047319 Bacteria 5432
103 Ga0495672_0025125 3300047320 Unclassified 3821
104 Ga0495680_0063246 3300047322 Bacteria 2842
105 Ga0495675_0000239 3300047444 Bacteria 39829
106 Ga0495684_0021847 3300047471 Unclassified 4926
107 Ga0495602_0002541 3300048088 Bacteria 18583
108 Ga0496108_0368346 3300048911 Bacteria 1254
109 Ga0496115_0358661 3300048918 Bacteria 1188
110 Ga0501031_0084644 3300049568 Bacteria 2067
111 Ga0501032_0182392 3300049569 Bacteria 1374
112 Ga0501033_0010446 3300049570 Bacteria 7120
113 Ga0501034_0050570 3300049571 Bacteria 4191
114 Ga0501036_0136358 3300049572 Bacteria 2071
115 Ga0501037_0188036 3300049573 Bacteria 1463
116 Ga0501038_0032510 3300049574 Bacteria 4602
117 Ga0501038_0169275 3300049574 Bacteria 1770
118 Ga0501039_0028906 3300049575 Bacteria 4268
119 Ga0501043_0055528 3300049579 Bacteria 3111
120 Ga0501043_0072199 3300049579 Bacteria 2711
121 Ga0501046_0204944 3300049580 Bacteria 1466
122 Ga0501047_0004419 3300049581 Bacteria 13232
123 Ga0501047_0037673 3300049581 Bacteria 4676
124 Ga0501072_0407312 3300049588 Bacteria 1079
125 Ga0501073_0063564 3300049589 Bacteria 2574
126 Ga0501074_0053425 3300049590 Bacteria 2914
127 Ga0501080_0105296 3300049742 Bacteria 2615
128 Ga0501035_0053279 3300049822 Bacteria 3618
129 Ga0501044_0086054 3300049823 Bacteria 3176
130 Ga0501044_0208286 3300049823 Bacteria 1910
131 nmdc:mga05p37_361411_c1 3300050507 Bacteria 1706
132 nmdc:mga09592_1541_c1 3300050508 Bacteria 18534
133 nmdc:mga0qj67_45970_c1 3300050509 Bacteria 3445
134 nmdc:mga06r32_3054_c1 3300050510 Bacteria 14985
135 Ga0501084_0080418 3300054114 Bacteria 2733
136 Ga0501082_0432649 3300060353 Bacteria 1149
137 2552109334 2551306166 Bacteria 9731570
138 2744956014 2744054611 Bacteria 5611514
139 2776369819 2775506925 Bacteria 7237746
140 2863071206 2863067949 Bacteria 8541735
141 2899373145 2899370129 Bacteria 6781179
142 2974317328 2974315732 Bacteria 4602776
143 2984525535 2984523437 Bacteria 4508481
144 Ga0207676_10348942
145 SwRhRL2b_contig_2327835
146 Ga0065707_10153027
147 Ga0068869_100041881
148 Ga0068869_100097152
149 Ga0070692_10134026
150 Ga0070714_100126140
151 Ga0070713_100135650
152 Ga0070711_100032140
153 Ga0070700_100117928
154 Ga0070708_100065906
155 Ga0070706_100000374
156 Ga0070706_100008184
157 Ga0070707_100011396
158 Ga0070698_100001565
159 Ga0070698_100346695
160 Ga0070697_100001188
161 Ga0068855_100042500
162 Ga0068852_100115165
163 Ga0068861_100227519
164 Ga0081455_10000025
165 Ga0081538_10000448
166 Ga0081539_10000846
167 Ga0075428_100000992
168 Ga0075428_100290233
169 Ga0075430_100003504
170 Ga0075431_100001995
171 Ga0075429_100000635
172 Ga0099794_10000613
173 Ga0111539_10073662
174 Ga0105243_10226842
175 Ga0105243_10392907
176 Ga0105248_10692071
177 Ga0157375_10160374
178 Ga0163163_10122785
179 Ga0157380_10311144
180 Ga0182008_10062353
181 Ga0207684_10005226
182 Ga0207684_10017882
183 Ga0207646_10002549
184 Ga0207650_10217848
185 Ga0207709_10076159
186 Ga0207669_10471314
187 Ga0207689_10106154
188 Ga0207689_10130832
189 Ga0207667_10053327
190 Ga0207668_10121887
191 Ga0207675_100087256
192 Ga0209588_1001226
193 Ga0209588_1007907
194 Ga0316576_10032674
195 Ga0316576_10084389
196 Ga0307405_10049003
197 Ga0307413_10001954
198 Ga0307413_10069299
199 Ga0307410_10003531
200 Ga0307406_10000247
201 Ga0307406_10267093
202 Ga0307412_10189149
203 Ga0307409_100000087
204 Ga0307409_100195825
205 Ga0307416_100000079
206 Ga0307416_100023850
207 Ga0307414_10019184
208 Ga0307411_10188573
209 Ga0307415_100015968
210 Ga0307415_100028153
211 Ga0307415_100063597
212 Ga0316583_10014455
213 Ga0316574_0051626
214 Ga0316582_0105369
215 Ga0373925_0043477
216 Ga0436364_0337981
217 Ga0400483_122825
218 Ga0400483_189910
219 Ga0451807_0568453
220 Ga0451577_0008948
221 Ga0466972_0019749
222 Ga0453683_0012506
223 Ga0466963_0155216
224 Ga0453684_0764002
225 Ga0451576_0004550
226 Ga0451576_0049936
227 Ga0451576_0286963
228 Ga0466958_0028835
229 Ga0495592_0003587
230 Ga0495651_0001219
231 Ga0495653_0012181
232 Ga0495608_0008674
233 Ga0495618_0036951
234 Ga0495628_0000499
235 Ga0495630_0018068
236 Ga0495652_0003344
237 Ga0495587_0011371
238 Ga0495667_0001975
239 Ga0495657_0018389
240 Ga0495623_0046284
241 Ga0495600_0002962
242 Ga0495604_0001966
243 Ga0495636_0031998
244 Ga0495674_0012987
245 Ga0495674_0025407
246 Ga0495672_0025125
247 Ga0495680_0063246
248 Ga0495675_0000239
249 Ga0495684_0021847
250 Ga0495602_0002541
251 Ga0496108_0368346
252 Ga0496115_0358661
253 Ga0501031_0084644
254 Ga0501032_0182392
255 Ga0501033_0010446
256 Ga0501034_0050570
257 Ga0501036_0136358
258 Ga0501037_0188036
259 Ga0501038_0032510
260 Ga0501038_0169275
261 Ga0501039_0028906
262 Ga0501043_0055528
263 Ga0501043_0072199
264 Ga0501046_0204944
265 Ga0501047_0004419
266 Ga0501047_0037673
267 Ga0501072_0407312
268 Ga0501073_0063564
269 Ga0501074_0053425
270 Ga0501080_0105296
271 Ga0501035_0053279
272 Ga0501044_0086054
273 Ga0501044_0208286
274 nmdc:mga05p37_361411_c1
275 nmdc:mga09592_1541_c1
276 nmdc:mga0qj67_45970_c1
277 nmdc:mga06r32_3054_c1
278 Ga0501084_0080418
279 Ga0501082_0432649
280 2552109334
281 2744956014
282 2776369819
283 2863071206
284 2899373145
285 2974317328
286 2984525535

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF16198

TruB_C_2

tRNA pseudouridylate synthase B C-terminal domain

236

295

0.94

PF01509

TruB_N

TruB family pseudouridylate synthase (N terminal domain)

68

235

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1k8w-assembly1.cif.gz_A crystal structure of the e. coli pseudouridine synthase trub bound to a t stem-loop rna 0.9006 3 317
1zl3-assembly1.cif.gz_A coupling of active site motions and rna binding 0.8983 4 316
1sgv-assembly1.cif.gz_A structure of trna psi55 pseudouridine synthase (trub) 0.8957 3 317
1k8w-assembly1.cif.gz_A crystal structure of the e. coli pseudouridine synthase trub bound to a t stem-loop rna 0.8921 3 317
1zl3-assembly1.cif.gz_A coupling of active site motions and rna binding 0.8898 4 316
ID Description Score Start End Superfamily
af_B9F4Z0_25_81_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9936 5 54 3.30.2350.10
af_Q2G2Q3_1_236_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9576 4 249 3.30.2350.10
af_Q2G2Q3_1_236_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9458 4 249 3.30.2350.10
af_P9WHP7_7_227_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9436 6 234 3.30.2350.10
af_Q57612_45_223_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9284 6 235 3.30.2350.10
ID Description Score Start End GO Terms
AF-C0GIW2-F1-model_v4 tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 0.9651 4 318 GO:0003723
GO:0031119
GO:0160148
GO:1990481
AF-A0A523W975-F1-model_v4 tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 0.9632 4 237 GO:0003723
GO:0031119
GO:0160148
GO:1990481
AF-A0A1F4RDD4-F1-model_v4 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.9619 4 228 GO:0003723
GO:0006400
GO:0160148
GO:1990481
AF-C0GIW2-F1-model_v4 tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 0.9619 4 318 GO:0003723
GO:0031119
GO:0160148
GO:1990481
AF-A0A3B9II93-F1-model_v4 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.9618 3 256 GO:0003723
GO:0006400
GO:0160148
GO:1990481

Map