F186625

General Info

Members Datasets Scaffolds Average Seq Length
142 122 132 237

Family's Representative Sequence

Representative Sequence 3300045976|Ga0466967_0001879|Ga0466967_0001879_11300_12103
Length 267
Sequence MWPGGRSGEGSAGDTPVNSGTPTGLARESTMTEELRYDDLKALFINCTLKRSPEPSNTAGLIEVSTRIMEKHGVQVEVLRAIDHDIATGVWPDMTEYGWATDEWPAIYAKVLAAHILVIAGPIWLGDNSSITKLIIERLYSCSHLLNDAGQYVYYGRVGGCLITGNEDGVKHCAMNVLYSLQHVGYTIPPQADAGWIGEVGPGPSYLDPSSGGPENDFTNRNTTFMTWNLMHLARMLKNSNGIPAHGNQRSEWEAGCRFDFENPEHR

Samples

Sample ID Description Type Environment
1 2734482000 Kineosporia rhizophila JCM 9960 Isolate Unclassified
2 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
3 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
4 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
5 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
6 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
7 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
8 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
9 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
10 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
11 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
12 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
13 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
14 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
15 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
24 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
25 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
31 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
34 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
47 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
48 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
49 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
50 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
51 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
52 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
53 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
54 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
55 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
56 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
57 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
58 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
59 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
60 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
61 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
62 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
63 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
64 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
65 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
66 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
67 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
68 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
71 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
72 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
73 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
74 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
75 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
76 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
77 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
78 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
79 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
80 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
81 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
82 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
83 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
84 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
85 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
86 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
87 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
88 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
89 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
90 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
91 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
92 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
93 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
94 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
95 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
96 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
97 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
98 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
99 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
100 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
101 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
102 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
103 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
104 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
105 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
106 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
107 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
108 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
109 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
110 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
111 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
112 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
113 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
114 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
115 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
116 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
117 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
118 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
119 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
120 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
121 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
122 3300053732 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.96
Metatranscriptomes 0
Isolates 7.04

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.49
Nodule 0
Rhizoplane 4.93
Rhizosphere 68.31
Stem 0
Stem Tuber 0
Unclassified 11.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10310078 3300003320 Bacteria 3616
2 Ga0065714_10067749 3300005288 Bacteria 5229
3 Ga0068868_100192881 3300005338 Bacteria 1695
4 Ga0070668_100002358 3300005347 Bacteria 13884
5 Ga0070710_10031183 3300005437 Bacteria 2875
6 Ga0070707_100002477 3300005468 Bacteria 17592
7 Ga0070698_100004095 3300005471 Bacteria 16015
8 Ga0070698_100012658 3300005471 Bacteria 8932
9 Ga0068855_100018681 3300005563 Bacteria 8337
10 Ga0068852_100023018 3300005616 Bacteria 5007
11 Ga0081539_10002470 3300005985 Bacteria 26024
12 Ga0070717_10184625 3300006028 Bacteria 1819
13 Ga0075365_10000035 3300006038 Bacteria 50425
14 Ga0075369_10215420 3300006186 Unclassified 888
15 Ga0075366_10076004 3300006195 Bacteria 2004
16 Ga0075370_10121471 3300006353 Viruses 1521
17 Ga0075428_100015833 3300006844 Bacteria 8348
18 Ga0075428_100831771 3300006844 Bacteria 981
19 Ga0075430_100007597 3300006846 Bacteria 9158
20 Ga0075431_100086465 3300006847 Bacteria 3235
21 Ga0075429_100004564 3300006880 Bacteria 11902
22 Ga0105032_100003 3300009979 Bacteria 186985
23 Ga0105028_113385 3300009993 Bacteria 869
24 Ga0157369_10000121 3300013105 Bacteria 111030
25 Ga0163162_10128382 3300013306 Bacteria 2643
26 Ga0207692_10085100 3300025898 Bacteria 1700
27 Ga0207684_10001686 3300025910 Bacteria 23486
28 Ga0207693_10131340 3300025915 Bacteria 1969
29 Ga0207646_10000062 3300025922 Bacteria 151179
30 Ga0207646_10005122 3300025922 Bacteria 13893
31 Ga0207700_10014766 3300025928 Bacteria 5128
32 Ga0207664_10080936 3300025929 Bacteria 2641
33 Ga0207664_10195796 3300025929 Bacteria 1742
34 Ga0207667_10030705 3300025949 Bacteria 5809
35 Ga0207668_10039564 3300025972 Bacteria 3175
36 Ga0207677_10403277 3300026023 Bacteria 1160
37 Ga0207708_10017980 3300026075 Bacteria 5319
38 Ga0207675_100311531 3300026118 Bacteria 1535
39 Ga0207698_10089520 3300026142 Bacteria 2514
40 Ga0265336_10003444 3300028666 Bacteria 6201
41 Ga0265338_10000891 3300028800 Bacteria 50269
42 Ga0265338_10003034 3300028800 Bacteria 24169
43 Ga0265327_10001888 3300031251 Bacteria 24243
44 Ga0265327_10051782 3300031251 Bacteria 2141
45 Ga0307513_10072906 3300031456 Bacteria 3577
46 Ga0307513_10227173 3300031456 Bacteria 1682
47 Ga0307509_10231335 3300031507 Bacteria 1651
48 Ga0316579_10130249 3300031691 Bacteria 1212
49 Ga0316576_10025500 3300031727 Bacteria 4140
50 Ga0316578_10151167 3300031728 Bacteria 1398
51 Ga0307405_10660206 3300031731 Bacteria 861
52 Ga0316577_10015432 3300031733 Bacteria 4203
53 Ga0307413_10530450 3300031824 Bacteria 951
54 Ga0307507_10006404 3300033179 Bacteria 18111
55 Ga0307510_10026026 3300033180 Bacteria 6735
56 Ga0373934_0081876 3300035086 Bacteria 1297
57 Ga0373953_0081580 3300035117 Bacteria 1345
58 Ga0373956_0004349 3300035119 Bacteria 5679
59 Ga0373956_0096739 3300035119 Bacteria 1366
60 Ga0373957_0061346 3300035120 Bacteria 1457
61 Ga0316574_0167788 3300035398 Bacteria 1413
62 Ga0373935_0138463 3300035692 Bacteria 1642
63 Ga0373927_0279600 3300035695 Bacteria 1098
64 Ga0373937_0009552 3300036401 Bacteria 8438
65 Ga0316582_0042643 3300036647 Bacteria 2843
66 Ga0316584_0016989 3300036712 Bacteria 5222
67 Ga0395900_0057585 3300037418 Bacteria 4001
68 Ga0395901_0009362 3300038443 Bacteria 9935
69 Ga0451853_0744222 3300041512 Bacteria 2538
70 Ga0451853_1050475 3300041512 Bacteria 1072
71 Ga0439450_002966 3300042008 Bacteria 2746
72 Ga0466968_0034526 3300044735 Bacteria 2111
73 Ga0466959_0153126 3300045049 Bacteria 1624
74 Ga0466967_0001879 3300045976 Bacteria 12672
75 Ga0466967_0054065 3300045976 Bacteria 3532
76 Ga0495603_0012267 3300046455 Bacteria 5189
77 Ga0495638_0000173 3300046460 Bacteria 100531
78 Ga0495651_0140808 3300046462 Bacteria 1749
79 Ga0495650_0001637 3300046471 Bacteria 20797
80 Ga0495662_0026973 3300046476 Bacteria 2775
81 Ga0495664_0045917 3300046477 Bacteria 2591
82 Ga0495608_0300554 3300046511 Bacteria 994
83 Ga0495628_0121268 3300046516 Bacteria 2005
84 Ga0495645_0075851 3300046543 Bacteria 2420
85 Ga0495667_0034722 3300046559 Bacteria 3371
86 Ga0495588_0003182 3300046674 Bacteria 7106
87 Ga0495657_0054188 3300046675 Bacteria 2681
88 Ga0495599_0112888 3300046678 Bacteria 1692
89 Ga0495581_0239184 3300047315 Bacteria 1062
90 Ga0495674_0242071 3300047319 Bacteria 1486
91 Ga0495672_0089850 3300047320 Bacteria 1690
92 Ga0495676_0266478 3300047321 Bacteria 1164
93 Ga0495676_0311643 3300047321 Bacteria 1059
94 Ga0495680_0200157 3300047322 Bacteria 1433
95 Ga0495675_0134397 3300047444 Bacteria 1536
96 Ga0495684_0111026 3300047471 Bacteria 2069
97 Ga0495686_0008157 3300047472 Bacteria 7739
98 Ga0495686_0170771 3300047472 Bacteria 1265
99 Ga0495602_0009980 3300048088 Bacteria 9852
100 Ga0496100_0085427 3300048903 Bacteria 2142
101 Ga0496100_0134007 3300048903 Bacteria 1748
102 Ga0496105_0049336 3300048908 Bacteria 3475
103 Ga0496105_0114068 3300048908 Bacteria 2229
104 Ga0496107_0182649 3300048910 Bacteria 1558
105 Ga0496114_0210188 3300048917 Bacteria 1706
106 Ga0496115_0238357 3300048918 Bacteria 1499
107 Ga0501073_0000012 3300049589 Bacteria 161319
108 Ga0501080_0000103 3300049742 Bacteria 58069
109 Ga0501080_0017105 3300049742 Bacteria 6698
110 Ga0501045_0403545 3300049824 Bacteria 1017
111 nmdc:mga00v17_37068_c1 3300050491 Bacteria 2909
112 nmdc:mga0yw44_164622_c1 3300050492 Bacteria 1453
113 nmdc:mga0yw44_19_c1 3300050492 Bacteria 70600
114 nmdc:mga07m45_57301_c1 3300050496 Bacteria 1818
115 nmdc:mga05p37_93670_c1 3300050507 Bacteria 3702
116 nmdc:mga09592_16607_c1 3300050508 Bacteria 6024
117 nmdc:mga0qj67_13544_c1 3300050509 Bacteria 6152
118 nmdc:mga06r32_134002_c1 3300050510 Bacteria 2452
119 nmdc:mga0sz30_199493_c1 3300050516 Unclassified 888
120 Ga0500643_002421 3300053087 Bacteria 9672
121 Ga0500555_000001 3300053103 Bacteria 1353713
122 Ga0500555_000005 3300053103 Bacteria 342334
123 Ga0500556_0000001 3300053104 Bacteria 1135060
124 Ga0500556_0001252 3300053104 Bacteria 11721
125 Ga0500569_000004 3300053109 Bacteria 100531
126 Ga0500568_0000003 3300053139 Bacteria 863587
127 Ga0500588_0000052 3300053146 Bacteria 20140
128 Ga0500616_0000067 3300053153 Bacteria 236311
129 Ga0500616_0000089 3300053153 Bacteria 191075
130 Ga0500570_021655 3300053724 Unclassified 3575
131 Ga0500570_060916 3300053724 Unclassified 1827
132 Ga0500656_000158 3300053732 Bacteria 4291

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005338 Ga0068868_100192881 Ga0068868_1001928812 214
2 3300025929 Ga0207664_10195796 Ga0207664_101957961 214
3 3300026023 Ga0207677_10403277 Ga0207677_104032772 214
4 3300033179 Ga0307507_10006404 Ga0307507_100064042 214
5 3300033180 Ga0307510_10026026 Ga0307510_100260262 214
6 3300044735 Ga0466968_0034526 Ga0466968_0034526_790_1494 214
7 3300046476 Ga0495662_0026973 Ga0495662_0026973_324_1082 215
8 3300046477 Ga0495664_0045917 Ga0495664_0045917_307_1041 215
9 3300046516 Ga0495628_0121268 Ga0495628_0121268_300_1034 215
10 3300046543 Ga0495645_0075851 Ga0495645_0075851_117_851 215
11 3300047319 Ga0495674_0242071 Ga0495674_0242071_28_762 215
12 3300031507 Ga0307509_10231335 Ga0307509_102313352 217
13 3300047315 Ga0495581_0239184 Ga0495581_0239184_264_983 217
14 3300053104 Ga0500556_0001252 Ga0500556_0001252_2750_3409 218
15 3300005347 Ga0070668_100002358 Ga0070668_1000023589 223
16 3300025972 Ga0207668_10039564 Ga0207668_100395642 223
17 3300031456 Ga0307513_10227173 Ga0307513_102271732 223
18 3300026075 Ga0207708_10017980 Ga0207708_100179804 225
19 3300041512 Ga0451853_0744222 Ga0451853_0744222_1628_2305 225
20 3300041512 Ga0451853_1050475 Ga0451853_1050475_242_958 225
21 3300046471 Ga0495650_0001637 Ga0495650_0001637_10319_11035 226
22 3300031691 Ga0316579_10130249 Ga0316579_101302492 227
23 3300031728 Ga0316578_10151167 Ga0316578_101511672 227
24 3300031733 Ga0316577_10015432 Ga0316577_100154323 227
25 3300035398 Ga0316574_0167788 Ga0316574_0167788_256_993 227
26 3300047320 Ga0495672_0089850 Ga0495672_0089850_512_1240 227
27 3300053153 Ga0500616_0000089 Ga0500616_0000089_38462_39190 227
28 3300006844 Ga0075428_100831771 Ga0075428_1008317712 230
29 3300047472 Ga0495686_0170771 Ga0495686_0170771_391_1089 231
30 3300053104 Ga0500556_0000001 Ga0500556_0000001_1089975_1090673 231
31 3300053139 Ga0500568_0000003 Ga0500568_0000003_535336_536034 231
32 3300031731 Ga0307405_10660206 Ga0307405_106602061 233
33 3300049589 Ga0501073_0000012 Ga0501073_0000012_88125_88856 233
34 3300049742 Ga0501080_0017105 Ga0501080_0017105_49_780 233
35 iso_pu_bacteria 2861520306 2861522931 233
36 3300005437 Ga0070710_10031183 Ga0070710_100311835 234
37 3300006028 Ga0070717_10184625 Ga0070717_101846253 234
38 3300006844 Ga0075428_100015833 Ga0075428_1000158337 234
39 3300006846 Ga0075430_100007597 Ga0075430_1000075974 234
40 3300006847 Ga0075431_100086465 Ga0075431_1000864654 234
41 3300006880 Ga0075429_100004564 Ga0075429_1000045648 234
42 3300025898 Ga0207692_10085100 Ga0207692_100851003 234
43 3300025915 Ga0207693_10131340 Ga0207693_101313402 234
44 3300025928 Ga0207700_10014766 Ga0207700_100147663 234
45 3300025929 Ga0207664_10080936 Ga0207664_100809363 234
46 3300031456 Ga0307513_10072906 Ga0307513_100729063 234
47 3300031824 Ga0307413_10530450 Ga0307413_105304502 234
48 3300035692 Ga0373935_0138463 Ga0373935_0138463_538_1254 234
49 3300035695 Ga0373927_0279600 Ga0373927_0279600_50_766 234
50 3300045976 Ga0466967_0054065 Ga0466967_0054065_435_1145 234
51 3300047321 Ga0495676_0266478 Ga0495676_0266478_52_768 234
52 3300048903 Ga0496100_0085427 Ga0496100_0085427_1326_2033 234
53 3300048903 Ga0496100_0134007 Ga0496100_0134007_855_1577 234
54 3300048908 Ga0496105_0049336 Ga0496105_0049336_1558_2265 234
55 3300048908 Ga0496105_0114068 Ga0496105_0114068_1461_2168 234
56 3300048910 Ga0496107_0182649 Ga0496107_0182649_253_975 234
57 3300048917 Ga0496114_0210188 Ga0496114_0210188_554_1261 234
58 3300048918 Ga0496115_0238357 Ga0496115_0238357_740_1447 234
59 iso_pu_bacteria 2870782633 2870787445 234
60 3300003320 rootH2_10310078 rootH2_103100783 235
61 3300005288 Ga0065714_10067749 Ga0065714_100677492 235
62 3300005468 Ga0070707_100002477 Ga0070707_10000247711 235
63 3300005471 Ga0070698_100004095 Ga0070698_10000409511 235
64 3300005471 Ga0070698_100012658 Ga0070698_1000126584 235
65 3300005563 Ga0068855_100018681 Ga0068855_1000186816 235
66 3300005616 Ga0068852_100023018 Ga0068852_1000230183 235
67 3300005985 Ga0081539_10002470 Ga0081539_1000247011 235
68 3300006038 Ga0075365_10000035 Ga0075365_100000353 235
69 3300006186 Ga0075369_10215420 Ga0075369_102154201 235
70 3300006195 Ga0075366_10076004 Ga0075366_100760042 235
71 3300006353 Ga0075370_10121471 Ga0075370_101214712 235
72 3300009979 Ga0105032_100003 Ga0105032_100003104 235
73 3300009993 Ga0105028_113385 Ga0105028_1133851 235
74 3300013105 Ga0157369_10000121 Ga0157369_1000012152 235
75 3300013306 Ga0163162_10128382 Ga0163162_101283824 235
76 3300025910 Ga0207684_10001686 Ga0207684_1000168619 235
77 3300025922 Ga0207646_10000062 Ga0207646_1000006210 235
78 3300025922 Ga0207646_10005122 Ga0207646_100051228 235
79 3300025949 Ga0207667_10030705 Ga0207667_100307053 235
80 3300026118 Ga0207675_100311531 Ga0207675_1003115313 235
81 3300026142 Ga0207698_10089520 Ga0207698_100895203 235
82 3300028666 Ga0265336_10003444 Ga0265336_100034443 235
83 3300028800 Ga0265338_10000891 Ga0265338_100008914 235
84 3300028800 Ga0265338_10003034 Ga0265338_1000303419 235
85 3300031251 Ga0265327_10001888 Ga0265327_1000188814 235
86 3300031251 Ga0265327_10051782 Ga0265327_100517822 235
87 3300031727 Ga0316576_10025500 Ga0316576_100255002 235
88 3300035086 Ga0373934_0081876 Ga0373934_0081876_251_982 235
89 3300035117 Ga0373953_0081580 Ga0373953_0081580_493_1224 235
90 3300035119 Ga0373956_0004349 Ga0373956_0004349_433_1155 235
91 3300035119 Ga0373956_0096739 Ga0373956_0096739_608_1339 235
92 3300035120 Ga0373957_0061346 Ga0373957_0061346_435_1166 235
93 3300036401 Ga0373937_0009552 Ga0373937_0009552_3048_3779 235
94 3300036647 Ga0316582_0042643 Ga0316582_0042643_2060_2797 235
95 3300036712 Ga0316584_0016989 Ga0316584_0016989_3322_4059 235
96 3300037418 Ga0395900_0057585 Ga0395900_0057585_1556_2287 235
97 3300038443 Ga0395901_0009362 Ga0395901_0009362_3077_3808 235
98 3300042008 Ga0439450_002966 Ga0439450_002966_1310_2038 235
99 3300045049 Ga0466959_0153126 Ga0466959_0153126_218_931 235
100 3300045976 Ga0466967_0001879 Ga0466967_0001879_11300_12103 235
101 3300046455 Ga0495603_0012267 Ga0495603_0012267_2656_3372 235
102 3300046460 Ga0495638_0000173 Ga0495638_0000173_57679_58389 235
103 3300046462 Ga0495651_0140808 Ga0495651_0140808_582_1313 235
104 3300046511 Ga0495608_0300554 Ga0495608_0300554_22_753 235
105 3300046559 Ga0495667_0034722 Ga0495667_0034722_2627_3358 235
106 3300046674 Ga0495588_0003182 Ga0495588_0003182_1821_2537 235
107 3300046675 Ga0495657_0054188 Ga0495657_0054188_1479_2210 235
108 3300046678 Ga0495599_0112888 Ga0495599_0112888_61_792 235
109 3300047321 Ga0495676_0311643 Ga0495676_0311643_125_862 235
110 3300047322 Ga0495680_0200157 Ga0495680_0200157_294_1025 235
111 3300047444 Ga0495675_0134397 Ga0495675_0134397_497_1228 235
112 3300047471 Ga0495684_0111026 Ga0495684_0111026_729_1460 235
113 3300047472 Ga0495686_0008157 Ga0495686_0008157_860_1585 235
114 3300048088 Ga0495602_0009980 Ga0495602_0009980_6353_7084 235
115 3300049742 Ga0501080_0000103 Ga0501080_0000103_43933_44679 235
116 3300049824 Ga0501045_0403545 Ga0501045_0403545_212_946 235
117 3300050491 nmdc:mga00v17_37068_c1 nmdc:mga00v17_37068_c1_413_1138 235
118 3300050492 nmdc:mga0yw44_164622_c1 nmdc:mga0yw44_164622_c1_92_805 235
119 3300050492 nmdc:mga0yw44_19_c1 nmdc:mga0yw44_19_c1_54412_55125 235
120 3300050496 nmdc:mga07m45_57301_c1 nmdc:mga07m45_57301_c1_853_1563 235
121 3300050507 nmdc:mga05p37_93670_c1 nmdc:mga05p37_93670_c1_486_1226 235
122 3300050508 nmdc:mga09592_16607_c1 nmdc:mga09592_16607_c1_3998_4738 235
123 3300050509 nmdc:mga0qj67_13544_c1 nmdc:mga0qj67_13544_c1_4012_4752 235
124 3300050510 nmdc:mga06r32_134002_c1 nmdc:mga06r32_134002_c1_712_1452 235
125 3300050516 nmdc:mga0sz30_199493_c1 nmdc:mga0sz30_199493_c1_15_728 235
126 3300053087 Ga0500643_002421 Ga0500643_002421_8046_8771 235
127 3300053103 Ga0500555_000001 Ga0500555_000001_433937_434653 235
128 3300053103 Ga0500555_000005 Ga0500555_000005_171249_171959 235
129 3300053109 Ga0500569_000004 Ga0500569_000004_42143_42853 235
130 3300053146 Ga0500588_0000052 Ga0500588_0000052_3336_4046 235
131 3300053153 Ga0500616_0000067 Ga0500616_0000067_70418_71128 235
132 3300053724 Ga0500570_021655 Ga0500570_021655_958_1683 235
133 3300053724 Ga0500570_060916 Ga0500570_060916_500_1210 235
134 3300053732 Ga0500656_000158 Ga0500656_000158_1211_1921 235
135 iso_pu_bacteria 2734482000 2734970358 235
136 iso_pu_bacteria 2808606439 2809198302 235
137 iso_pu_bacteria 2816332139 2816508421 235
138 iso_pu_bacteria 2832004796 2832006073 235
139 iso_pu_bacteria 2837268691 2837269607 235
140 iso_pu_bacteria 2866065130 2866069351 235
141 iso_pu_bacteria 2891326441 2891330850 235
142 iso_pu_bacteria 2904430863 2904432750 235

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03358

FMN_red

NADPH-dependent FMN reductase

40

196

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
1e5d-assembly1.cif.gz_B rubredoxin oxygen:oxidoreductase (roo) from anaerobe desulfovibrio gigas 0.8536 9 204
5mji-assembly1.cif.gz_A crystal structure of rosb with bound intermediate ohc-rp (8-demethyl-8-formylriboflavin-5'-phosphate) 0.8376 8 231
6frn-assembly1.cif.gz_A structure of f420h2 oxidase (fpra) co-crystallized with 10mm tb-xo4 and calcium chloride 0.8029 6 203
5mji-assembly1.cif.gz_A crystal structure of rosb with bound intermediate ohc-rp (8-demethyl-8-formylriboflavin-5'-phosphate) 0.7939 8 231
5wid-assembly2.cif.gz_B structure of a flavodoxin from the domain archaea 0.789 8 206
ID Description Score Start End Superfamily
af_I6Y946_20_176_3.40.50.360 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.9802 11 166 3.40.50.360
af_I6Y946_20_176_3.40.50.360 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.9679 11 166 3.40.50.360
1a4iA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Leucine Dehydrogenase, chain A, domain 1 0.8627 6 48 3.40.50.10860
6gaqB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.814 9 200 3.40.50.360
1e5dB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.8032 10 205 3.40.50.360
ID Description Score Start End GO Terms
AF-A0A7Y3DAD5-F1-model_v4 Flavodoxin family protein 0.978 3 142 GO:0016491
AF-A0A520WW18-F1-model_v4 Flavodoxin family protein 0.9762 3 155 GO:0016491
AF-A0A238YYW3-F1-model_v4 Multimeric flavodoxin WrbA 0.9752 3 224 GO:0016491
AF-A0A259SDW8-F1-model_v4 Flavodoxin 0.9749 3 216
AF-A0A838JS90-F1-model_v4 NAD(P)H-dependent oxidoreductase 0.9736 3 105 GO:0016491

Feature Viewer

pLDDT pTM Quality
87.86 0.88 High
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Predicted Structure (AlphaFold2)

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