F180089

General Info

Members Datasets Scaffolds Average Seq Length
140 103 280 530

Family's Representative Sequence

Representative Sequence 3300033179|Ga0307507_10120042|Ga0307507_101200422
Length 593
Sequence MWIISITCEEATGGDRRGSTPRDLLWGMTIERWVPSQTYTKQETVILKSLRRTRKLFAFLRDHRHELFDDEMQRALEAMYRNTGAGKDPVCPARMAMAALMQGYLAVSDAEAVQLTMVDLRWQMVLDCLGNTEEAFSQGAFQEFRQRLIRHDMDRVLLEKTSALARTTQAFDYRKLPKDLRIAIDSSPLEGAGRVEDTVNLLAHAGRKIVDCVADLLSWPRERVCTEAGIPLLAASSVKKALDYTWSDPADKAEAVSVLVSQLTSLEAWIRDRLPHELARPPLQEHVETLHQVMAQDLEPDPTRGGDRSDNTSAVRIREGVAPDRRVSIEDKDMRHGRKSKSKRFNGFKRHLARDLRTGLILACAMTPANRPDEEAADPIEQDLKHLCGAKLSITSLYIDRAYINAPLVDHVLEHGGEIICRPWQARNGALFSKADFKINVRDRTITCPANKTQPFEFGTTVEFDPENCDRCRLRDQCTDASLGHGRTVSIADNEQLQKRLRRLAHTSAGRARLRERVPVEHALARAGRRQGRRARYRGVRNNLYDWRRASLLTNLEEIQRHLALSAAAALAVTAATAKPQRCAGLTVLRNAA

Samples

Sample ID Description Type Environment
1 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
6 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
7 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
8 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
9 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
10 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
11 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
12 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
13 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
14 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
15 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
16 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
17 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
18 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
20 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
21 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
28 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
29 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
30 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
31 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
32 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
33 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
34 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
35 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
36 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
37 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
38 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
39 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
40 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
41 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
42 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
43 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
44 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
45 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
46 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
47 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
48 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
49 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
50 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
51 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
52 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
53 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
54 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
55 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
56 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
57 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
58 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
59 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
60 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
61 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
62 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
63 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
64 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
65 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
66 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
67 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
68 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
69 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
70 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
71 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
72 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
73 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
74 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
75 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
76 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
77 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
78 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
79 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
80 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
81 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
82 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
83 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
84 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
85 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
86 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
87 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
88 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
89 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
90 3300053115 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 endosphere Metagenome Endosphere
91 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
92 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
93 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
94 3300053127 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 endosphere Metagenome Endosphere
95 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
96 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
97 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
98 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
99 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
100 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
101 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
102 3300053725 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 endosphere Metagenome Endosphere
103 3300053737 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.14
Nodule 0
Rhizoplane 0.71
Rhizosphere 70
Stem 0
Stem Tuber 0
Unclassified 31.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307507_10120042 3300033179 Bacteria 2107
2 rootH1_10316430 3300003323 Bacteria 1776
3 Ga0068869_100130919 3300005334 Unclassified 1928
4 Ga0070689_100000013 3300005340 Bacteria 206982
5 Ga0070705_100123392 3300005440 Unclassified 1676
6 Ga0070695_100106007 3300005545 Bacteria 1900
7 Ga0070665_100149140 3300005548 Bacteria 2342
8 Ga0070665_100191054 3300005548 Bacteria 2048
9 Ga0081455_10054524 3300005937 Bacteria 3407
10 Ga0081455_10073640 3300005937 Bacteria 2823
11 Ga0070717_10196137 3300006028 Unclassified 1766
12 Ga0075366_10068028 3300006195 Bacteria 2120
13 Ga0097621_100082580 3300006237 Bacteria 2676
14 Ga0068871_100098611 3300006358 Bacteria 2445
15 Ga0075428_100100821 3300006844 Bacteria 3148
16 Ga0075431_100174189 3300006847 Unclassified 2210
17 Ga0075433_10136297 3300006852 Bacteria 2182
18 Ga0075429_100100747 3300006880 Bacteria 2521
19 Ga0105247_10042950 3300009101 Unclassified 2769
20 Ga0114129_10302748 3300009147 Unclassified 2130
21 Ga0114129_10364003 3300009147 Bacteria 1913
22 Ga0105243_10033693 3300009148 Bacteria 3961
23 Ga0213875_10030041 3300021388 Unclassified 2575
24 Ga0213875_10060966 3300021388 Unclassified 1763
25 Ga0207710_10054865 3300025900 Unclassified 1796
26 Ga0207670_10000004 3300025936 Bacteria 707262
27 Ga0207661_10184798 3300025944 Bacteria 1823
28 Ga0207678_10079487 3300026067 Bacteria 2808
29 Ga0207674_10130830 3300026116 Bacteria 2473
30 Ga0268266_10090134 3300028379 Bacteria 2687
31 Ga0268266_10098451 3300028379 Bacteria 2573
32 Ga0265337_1020526 3300028556 Unclassified 2069
33 Ga0265323_10032095 3300028653 Bacteria 1949
34 Ga0265336_10024697 3300028666 Unclassified 1896
35 Ga0265332_10017648 3300031238 Bacteria 3149
36 Ga0265320_10044902 3300031240 Unclassified 2174
37 Ga0265331_10036920 3300031250 Bacteria 2395
38 Ga0265316_10063675 3300031344 Bacteria 2858
39 Ga0265316_10097385 3300031344 Unclassified 2239
40 Ga0307509_10002621 3300031507 Bacteria 28788
41 Ga0307509_10069546 3300031507 Bacteria 3679
42 Ga0307509_10190116 3300031507 Bacteria 1905
43 Ga0307508_10108210 3300031616 Unclassified 2379
44 Ga0307508_10117698 3300031616 Unclassified 2258
45 Ga0307514_10102603 3300031649 Unclassified 2050
46 Ga0316575_10021507 3300031665 Bacteria 2484
47 Ga0265314_10088279 3300031711 Unclassified 2025
48 Ga0265314_10092367 3300031711 Unclassified 1967
49 Ga0265342_10020442 3300031712 Bacteria 4245
50 Ga0316576_10035301 3300031727 Unclassified 3569
51 Ga0316576_10108046 3300031727 Unclassified 2084
52 Ga0316576_10155462 3300031727 Unclassified 1724
53 Ga0316578_10013667 3300031728 Bacteria 4312
54 Ga0316578_10074366 3300031728 Bacteria 2015
55 Ga0307516_10115364 3300031730 Bacteria 2482
56 Ga0316577_10032104 3300031733 Unclassified 2933
57 Ga0307416_100159461 3300032002 Bacteria 2083
58 Ga0316585_10022757 3300032137 Bacteria 1929
59 Ga0307507_10122058 3300033179 Bacteria 2079
60 Ga0307507_10126077 3300033179 Unclassified 2024
61 Ga0373926_0030235 3300035083 Unclassified 1907
62 Ga0373949_0000755 3300035090 Bacteria 10438
63 Ga0373936_0038755 3300035113 Unclassified 1906
64 Ga0373936_0044477 3300035113 Bacteria 1786
65 Ga0373943_0031355 3300035170 Bacteria 2522
66 Ga0373935_0036592 3300035692 Bacteria 3069
67 Ga0373935_0055141 3300035692 Bacteria 2532
68 Ga0373927_0068667 3300035695 Unclassified 2293
69 Ga0373927_0073770 3300035695 Unclassified 2209
70 Ga0316582_0092666 3300036647 Unclassified 1991
71 Ga0316582_0121796 3300036647 Bacteria 1746
72 Ga0316584_0003236 3300036712 Bacteria 10543
73 Ga0373925_0069648 3300037068 Bacteria 2657
74 Ga0373925_0153544 3300037068 Unclassified 1809
75 Ga0436364_0352963 3300037853 Unclassified 3281
76 Ga0436364_1367335 3300037853 Unclassified 2297
77 Ga0436364_1514321 3300037853 Bacteria 2508
78 Ga0451793_1330328 3300041452 Unclassified 1863
79 Ga0451853_0484896 3300041512 Unclassified 1897
80 Ga0451577_0141043 3300042876 Bacteria 2165
81 Ga0451577_0178052 3300042876 Bacteria 1917
82 Ga0451577_0190575 3300042876 Bacteria 1849
83 Ga0466969_0039239 3300044656 Bacteria 2379
84 Ga0466972_0076167 3300044658 Bacteria 1598
85 Ga0453683_0062374 3300044673 Unclassified 2330
86 Ga0466966_0040431 3300044684 Bacteria 3001
87 Ga0453684_0069463 3300044712 Bacteria 4467
88 Ga0453684_0097286 3300044712 Bacteria 3612
89 Ga0453684_0099156 3300044712 Bacteria 3569
90 Ga0453684_0148275 3300044712 Bacteria 2791
91 Ga0453684_0250822 3300044712 Bacteria 2032
92 Ga0453684_0277349 3300044712 Bacteria 1913
93 Ga0453684_0293432 3300044712 Bacteria 1850
94 Ga0466970_0040526 3300044765 Bacteria 2473
95 Ga0466959_0014976 3300045049 Bacteria 5651
96 Ga0451576_0011440 3300045051 Bacteria 10081
97 Ga0451576_0226725 3300045051 Bacteria 1951
98 Ga0451576_0270814 3300045051 Bacteria 1775
99 Ga0451576_0368218 3300045051 Unclassified 1505
100 Ga0495580_0120786 3300046472 Bacteria 1819
101 Ga0495582_0055985 3300046473 Bacteria 2174
102 Ga0495639_0047913 3300046475 Bacteria 1937
103 Ga0495594_0067611 3300046499 Bacteria 1983
104 Ga0495596_0048528 3300046500 Bacteria 1665
105 Ga0495632_0053964 3300046519 Bacteria 1971
106 Ga0495586_0060696 3300046535 Bacteria 2056
107 Ga0495586_0063496 3300046535 Bacteria 2012
108 Ga0495634_0084509 3300046642 Bacteria 2069
109 Ga0495634_0087996 3300046642 Bacteria 2020
110 Ga0495647_0036392 3300046681 Unclassified 1853
111 Ga0495636_0060591 3300047318 Bacteria 1599
112 Ga0501298_007011 3300049521 Bacteria 1859
113 Ga0501067_0033772 3300049583 Unclassified 2838
114 Ga0501070_0129673 3300049586 Bacteria 2083
115 nmdc:mga05p37_232933_c1 3300050507 Unclassified 2218
116 nmdc:mga09592_85143_c1 3300050508 Bacteria 2697
117 nmdc:mga0a205_94576_c1 3300050515 Bacteria 2887
118 Ga0500578_0045024 3300053086 Bacteria 2832
119 Ga0500646_0014575 3300053090 Bacteria 2041
120 Ga0500646_0015406 3300053090 Unclassified 1989
121 Ga0500647_0030751 3300053091 Bacteria 2551
122 Ga0500583_0037719 3300053092 Unclassified 2172
123 Ga0500651_0050941 3300053093 Bacteria 2597
124 Ga0500650_0050641 3300053098 Unclassified 1928
125 Ga0500572_003644 3300053111 Bacteria 3498
126 Ga0500591_046205 3300053115 Bacteria 2055
127 Ga0500595_032227 3300053119 Bacteria 1751
128 Ga0500597_001589 3300053120 Bacteria 5836
129 Ga0500607_094460 3300053121 Bacteria 1497
130 Ga0500623_056572 3300053127 Unclassified 1953
131 Ga0500642_0029959 3300053130 Bacteria 2260
132 Ga0500559_0005060 3300053136 Bacteria 6110
133 Ga0500564_045022 3300053138 Unclassified 2025
134 Ga0500577_0031148 3300053142 Bacteria 1863
135 Ga0500622_0050876 3300053156 Unclassified 2134
136 Ga0500636_0052948 3300053177 Bacteria 2382
137 Ga0500636_0072122 3300053177 Bacteria 2001
138 Ga0500637_0066974 3300053178 Bacteria 2062
139 Ga0500576_014927 3300053725 Bacteria 3504
140 Ga0500601_001187 3300053737 Bacteria 2907
141 Ga0307507_10120042
142 rootH1_10316430
143 Ga0068869_100130919
144 Ga0070689_100000013
145 Ga0070705_100123392
146 Ga0070695_100106007
147 Ga0070665_100149140
148 Ga0070665_100191054
149 Ga0081455_10054524
150 Ga0081455_10073640
151 Ga0070717_10196137
152 Ga0075366_10068028
153 Ga0097621_100082580
154 Ga0068871_100098611
155 Ga0075428_100100821
156 Ga0075431_100174189
157 Ga0075433_10136297
158 Ga0075429_100100747
159 Ga0105247_10042950
160 Ga0114129_10302748
161 Ga0114129_10364003
162 Ga0105243_10033693
163 Ga0213875_10030041
164 Ga0213875_10060966
165 Ga0207710_10054865
166 Ga0207670_10000004
167 Ga0207661_10184798
168 Ga0207678_10079487
169 Ga0207674_10130830
170 Ga0268266_10090134
171 Ga0268266_10098451
172 Ga0265337_1020526
173 Ga0265323_10032095
174 Ga0265336_10024697
175 Ga0265332_10017648
176 Ga0265320_10044902
177 Ga0265331_10036920
178 Ga0265316_10063675
179 Ga0265316_10097385
180 Ga0307509_10002621
181 Ga0307509_10069546
182 Ga0307509_10190116
183 Ga0307508_10108210
184 Ga0307508_10117698
185 Ga0307514_10102603
186 Ga0316575_10021507
187 Ga0265314_10088279
188 Ga0265314_10092367
189 Ga0265342_10020442
190 Ga0316576_10035301
191 Ga0316576_10108046
192 Ga0316576_10155462
193 Ga0316578_10013667
194 Ga0316578_10074366
195 Ga0307516_10115364
196 Ga0316577_10032104
197 Ga0307416_100159461
198 Ga0316585_10022757
199 Ga0307507_10122058
200 Ga0307507_10126077
201 Ga0373926_0030235
202 Ga0373949_0000755
203 Ga0373936_0038755
204 Ga0373936_0044477
205 Ga0373943_0031355
206 Ga0373935_0036592
207 Ga0373935_0055141
208 Ga0373927_0068667
209 Ga0373927_0073770
210 Ga0316582_0092666
211 Ga0316582_0121796
212 Ga0316584_0003236
213 Ga0373925_0069648
214 Ga0373925_0153544
215 Ga0436364_0352963
216 Ga0436364_1367335
217 Ga0436364_1514321
218 Ga0451793_1330328
219 Ga0451853_0484896
220 Ga0451577_0141043
221 Ga0451577_0178052
222 Ga0451577_0190575
223 Ga0466969_0039239
224 Ga0466972_0076167
225 Ga0453683_0062374
226 Ga0466966_0040431
227 Ga0453684_0069463
228 Ga0453684_0097286
229 Ga0453684_0099156
230 Ga0453684_0148275
231 Ga0453684_0250822
232 Ga0453684_0277349
233 Ga0453684_0293432
234 Ga0466970_0040526
235 Ga0466959_0014976
236 Ga0451576_0011440
237 Ga0451576_0226725
238 Ga0451576_0270814
239 Ga0451576_0368218
240 Ga0495580_0120786
241 Ga0495582_0055985
242 Ga0495639_0047913
243 Ga0495594_0067611
244 Ga0495596_0048528
245 Ga0495632_0053964
246 Ga0495586_0060696
247 Ga0495586_0063496
248 Ga0495634_0084509
249 Ga0495634_0087996
250 Ga0495647_0036392
251 Ga0495636_0060591
252 Ga0501298_007011
253 Ga0501067_0033772
254 Ga0501070_0129673
255 nmdc:mga05p37_232933_c1
256 nmdc:mga09592_85143_c1
257 nmdc:mga0a205_94576_c1
258 Ga0500578_0045024
259 Ga0500646_0014575
260 Ga0500646_0015406
261 Ga0500647_0030751
262 Ga0500583_0037719
263 Ga0500651_0050941
264 Ga0500650_0050641
265 Ga0500572_003644
266 Ga0500591_046205
267 Ga0500595_032227
268 Ga0500597_001589
269 Ga0500607_094460
270 Ga0500623_056572
271 Ga0500642_0029959
272 Ga0500559_0005060
273 Ga0500564_045022
274 Ga0500577_0031148
275 Ga0500622_0050876
276 Ga0500636_0052948
277 Ga0500636_0072122
278 Ga0500637_0066974
279 Ga0500576_014927
280 Ga0500601_001187

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13751

DDE_Tnp_1_6

Transposase DDE domain

447

560

0.87

PF01609

DDE_Tnp_1

Transposase DDE domain

321

556

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
4fw2-assembly1.cif.gz_A crystal structure of rsv three-domain integrase with disordered n-terminal domain 0.6935 315 384
5cz2-assembly1.cif.gz_A crystal structure of a two-domain fragment of mmtv integrase 0.6876 315 384
1czb-assembly1.cif.gz_A-2 atomic resolution asv integrase core domain from hepes 0.6875 315 382
5cz2-assembly3.cif.gz_E crystal structure of a two-domain fragment of mmtv integrase 0.6874 315 384
3o4q-assembly1.cif.gz_A-2 crystal structure of the rous associated virus integrase catalytic domain a182t in citrate buffer ph 6.2 0.6862 315 384
ID Description Score Start End Superfamily
af_Q86IC6_16_154_2.60.40.150 Mainly Beta;Sandwich;Immunoglobulin-like;C2 domain 0.8471 312 334 2.60.40.150
af_E7FF82_122_257_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.7567 314 374 3.30.420.10
af_P0CF80_124_283_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.7516 314 385 3.30.420.10
af_P19769_115_278_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.7353 312 385 3.30.420.10
af_P28916_100_246_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.723 306 384 3.30.420.10
ID Description Score Start End GO Terms
AF-A0A4P2QUC5-F1-model_v4 Transposase InsH N-terminal domain-containing protein 0.9465 23 126
AF-A0A1Z4KWV0-F1-model_v4 Putative transposase 0.9373 1 133
AF-D6TC19-F1-model_v4 Transposase InsH N-terminal domain-containing protein 0.9338 3 112
AF-A0A5M3XBL2-F1-model_v4 Transposase InsH N-terminal domain-containing protein 0.9322 1 116
AF-A9FCI8-F1-model_v4 Uncharacterized protein 0.9321 3 104

Map