F177993

General Info

Members Datasets Scaffolds Average Seq Length
139 114 103 356

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8001781756|8001789822
Length 388
Sequence GPRPAKGPFAVRVVTEEFFRAAGQQVIVWDVSIIEVRTRTISAPLHTPFVTALRRATSLETLLVEIVDSDGVSGFGEAPQVWAVTGASIAGSRACVEQVLGPLLVGRDPDDLAARCRETARAVVGNEAAKMAVDVALHDLAARRLGIPLVRLLGGTSLRVPTDVTLAAGEASALAATAKQRAAEGFTVIKVKVGTDAAGDLARVRAVCGAVDPGVKVRLDANQGWSPRDAVRIINRIAAEELPVELVEQPVARADLDGLAWVSARADLPIMADESVFGVRDLVEVIRRRAADLVNVKLAKCGGLSTARTLLELAAAHGLGTCVGSMMEGPVGIGAAASLVAAHPTTVVSDLDAAWWLAASPVDGGPRYDGATVVLPDAPGLGVSGAAQ

Samples

Sample ID Description Type Environment
1 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
2 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
3 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
4 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
5 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
6 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
7 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
8 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
9 2855683550 Micromonospora sp. RP3T Isolate Unclassified
10 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
11 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
12 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
13 2858868258 Micromonospora sp. MH33 Isolate Unclassified
14 2858882152 Micromonospora noduli MED15 Isolate Nodule
15 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
16 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
17 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
18 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
19 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
20 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
21 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
22 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
23 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
24 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
25 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
26 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
27 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
28 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
29 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
30 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
31 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
32 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
33 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
34 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
35 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
36 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
37 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
38 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
39 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
40 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
41 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
42 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
43 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
44 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
45 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
46 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
47 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
48 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
49 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
51 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
52 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
53 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
54 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
59 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
60 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
61 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
62 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
63 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
64 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
65 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
66 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
67 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
68 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
69 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
74 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
75 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
76 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
77 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
78 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
79 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
80 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
81 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
82 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
83 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
84 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
85 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
86 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
87 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
94 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
95 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
96 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
97 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
98 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
99 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
100 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
101 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
102 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
103 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
104 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
105 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
106 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
107 649633069 Micromonospora sp. L5 Isolate Unclassified
108 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
109 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
110 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
111 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
112 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
113 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
114 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 74.1
Metatranscriptomes 0
Isolates 25.9

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.04
Nodule 4.32
Rhizoplane 2.16
Rhizosphere 69.78
Stem 0
Stem Tuber 0
Unclassified 18.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10014316 3300003203 Bacteria 3377
2 Ga0070683_100112878 3300005329 Bacteria 2564
3 Ga0070682_100140281 3300005337 Bacteria 1647
4 Ga0070675_100263097 3300005354 Bacteria 1512
5 Ga0070674_100056583 3300005356 Unclassified 2720
6 Ga0070714_100010312 3300005435 Bacteria 7382
7 Ga0070684_100063235 3300005535 Bacteria 3244
8 Ga0070684_100113584 3300005535 Bacteria 2431
9 Ga0081455_10010591 3300005937 Bacteria 9331
10 Ga0081455_10031290 3300005937 Bacteria 4817
11 Ga0081538_10001089 3300005981 Bacteria 28823
12 Ga0081538_10040165 3300005981 Bacteria 2988
13 Ga0081539_10000267 3300005985 Bacteria 119469
14 Ga0075365_10126730 3300006038 Bacteria 1764
15 Ga0075368_10000054 3300006042 Bacteria 28035
16 Ga0075363_100001624 3300006048 Bacteria 8657
17 Ga0075364_10130993 3300006051 Bacteria 1683
18 Ga0075428_100000533 3300006844 Bacteria 38803
19 Ga0075428_100001925 3300006844 Bacteria 22274
20 Ga0075428_100002046 3300006844 Bacteria 21758
21 Ga0075430_100000692 3300006846 Bacteria 25692
22 Ga0075430_100010443 3300006846 Bacteria 7860
23 Ga0075430_100013556 3300006846 Bacteria 6950
24 Ga0075430_100054064 3300006846 Bacteria 3379
25 Ga0075431_100001105 3300006847 Bacteria 24165
26 Ga0075431_100001906 3300006847 Bacteria 19810
27 Ga0075434_100113322 3300006871 Bacteria 2724
28 Ga0075429_100000518 3300006880 Bacteria 29269
29 Ga0075429_100010705 3300006880 Bacteria 7932
30 Ga0075435_100229200 3300007076 Bacteria 1578
31 Ga0111539_10008446 3300009094 Bacteria 13101
32 Ga0105245_10126033 3300009098 Bacteria 2397
33 Ga0114129_10000440 3300009147 Bacteria 49341
34 Ga0163163_10193490 3300014325 Bacteria 2082
35 Ga0163163_10311366 3300014325 Bacteria 1627
36 Ga0163161_10006389 3300017792 Bacteria 8159
37 Ga0207694_10136761 3300025924 Unclassified 1968
38 Ga0207664_10003477 3300025929 Bacteria 10506
39 Ga0207709_10042888 3300025935 Bacteria 2724
40 Ga0207691_10062244 3300025940 Bacteria 3387
41 Ga0207428_10023151 3300027907 Bacteria 5227
42 Ga0265326_10000005 3300028558 Bacteria 257124
43 Ga0265334_10000024 3300028573 Bacteria 118525
44 Ga0265336_10004520 3300028666 Bacteria 5247
45 Ga0265338_10002392 3300028800 Bacteria 28240
46 Ga0265324_10002577 3300029957 Bacteria 9138
47 Ga0307513_10046243 3300031456 Bacteria 4748
48 Ga0307408_100162358 3300031548 Bacteria 1776
49 Ga0307518_10090042 3300031838 Bacteria 2208
50 Ga0307409_100011590 3300031995 Bacteria 5570
51 Ga0307416_100152692 3300032002 Bacteria 2121
52 Ga0395899_0134622 3300037312 Bacteria 1762
53 Ga0395900_0328667 3300037418 Bacteria 1507
54 Ga0395898_0184013 3300037466 Bacteria 1996
55 Ga0395905_0121104 3300037471 Bacteria 2459
56 Ga0439449_0053494 3300042007 Bacteria 1492
57 Ga0466960_0017999 3300044901 Bacteria 3090
58 Ga0466960_0026955 3300044901 Bacteria 2616
59 Ga0466967_0101641 3300045976 Unclassified 2628
60 Ga0495639_0061634 3300046475 Bacteria 1720
61 Ga0495606_0002293 3300046507 Bacteria 22623
62 Ga0495668_0000201 3300046616 Bacteria 87218
63 Ga0495625_0010710 3300046660 Bacteria 7550
64 Ga0495672_0028446 3300047320 Bacteria 3537
65 Ga0495680_0159139 3300047322 Bacteria 1641
66 Ga0495626_0000090 3300048091 Bacteria 119019
67 Ga0496102_0023443 3300048905 Bacteria 5482
68 Ga0496103_0030615 3300048906 Bacteria 3276
69 Ga0496114_0003300 3300048917 Bacteria 12390
70 Ga0496124_0177601 3300048927 Bacteria 1642
71 Ga0501031_0071276 3300049568 Bacteria 2263
72 Ga0501034_0151105 3300049571 Bacteria 2298
73 Ga0501036_0197398 3300049572 Bacteria 1693
74 Ga0501038_0053090 3300049574 Bacteria 3491
75 Ga0501042_0172429 3300049578 Bacteria 1561
76 Ga0501047_0032917 3300049581 Bacteria 5005
77 Ga0501068_0038722 3300049584 Bacteria 2857
78 Ga0501068_0125332 3300049584 Bacteria 1603
79 Ga0501069_0132980 3300049585 Bacteria 1425
80 Ga0501072_0094838 3300049588 Bacteria 2371
81 Ga0501074_0031103 3300049590 Bacteria 3868
82 nmdc:mga03n38_31222_c1 3300050490 Bacteria 2246
83 nmdc:mga04h51_516_c1 3300050495 Bacteria 7077
84 nmdc:mga05p37_100209_c1 3300050507 Bacteria 3568
85 nmdc:mga05p37_155_c1 3300050507 Bacteria 65410
86 nmdc:mga05p37_162_c1 3300050507 Bacteria 64436
87 nmdc:mga05p37_453784_c1 3300050507 Bacteria 1483
88 nmdc:mga05p37_55016_c1 3300050507 Bacteria 4896
89 nmdc:mga09592_165_c1 3300050508 Bacteria 46519
90 nmdc:mga09592_1_c1 3300050508 Bacteria 201102
91 nmdc:mga09592_239164_c1 3300050508 Bacteria 1573
92 nmdc:mga0qj67_12_c2 3300050509 Bacteria 35268
93 nmdc:mga0qj67_32138_c1 3300050509 Bacteria 4092
94 nmdc:mga0qj67_558_c1 3300050509 Bacteria 22165
95 nmdc:mga0qj67_9998_c1 3300050509 Bacteria 7074
96 nmdc:mga06r32_10535_c1 3300050510 Bacteria 8335
97 nmdc:mga06r32_2542_c1 3300050510 Bacteria 16319
98 nmdc:mga06r32_265_c1 3300050510 Bacteria 43312
99 nmdc:mga06r32_7_c1 3300050510 Bacteria 117700
100 nmdc:mga08y16_95537_c1 3300050511 Bacteria 3096
101 nmdc:mga0n895_67424_c1 3300050512 Bacteria 3544
102 Ga0500616_0001202 3300053153 Bacteria 26308
103 Ga0530510_0114019 3300061734 Bacteria 1981

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048917 Ga0496114_0003300 Ga0496114_0003300_8843_9856 310
2 3300031548 Ga0307408_100162358 Ga0307408_1001623582 320
3 3300031995 Ga0307409_100011590 Ga0307409_1000115903 321
4 3300006042 Ga0075368_10000054 Ga0075368_1000005422 322
5 3300006048 Ga0075363_100001624 Ga0075363_1000016247 322
6 3300050490 nmdc:mga03n38_31222_c1 nmdc:mga03n38_31222_c1_885_1910 322
7 3300050495 nmdc:mga04h51_516_c1 nmdc:mga04h51_516_c1_2053_3078 322
8 3300005535 Ga0070684_100063235 Ga0070684_1000632352 324
9 3300042007 Ga0439449_0053494 Ga0439449_0053494_290_1291 325
10 3300005981 Ga0081538_10001089 Ga0081538_1000108910 330
11 3300006038 Ga0075365_10126730 Ga0075365_101267302 332
12 3300048927 Ga0496124_0177601 Ga0496124_0177601_379_1398 336
13 iso_pu_bacteria 2855670206 2855675324 338
14 iso_pu_bacteria 2857288857 2857294631 338
15 iso_pu_bacteria 2858882152 2858885691 338
16 3300014325 Ga0163163_10311366 Ga0163163_103113662 341
17 3300053153 Ga0500616_0001202 Ga0500616_0001202_1946_2983 342
18 3300006844 Ga0075428_100001925 Ga0075428_1000019253 345
19 3300006846 Ga0075430_100013556 Ga0075430_1000135563 345
20 3300006871 Ga0075434_100113322 Ga0075434_1001133223 345
21 3300006880 Ga0075429_100010705 Ga0075429_1000107056 345
22 3300009094 Ga0111539_10008446 Ga0111539_100084466 345
23 3300027907 Ga0207428_10023151 Ga0207428_100231514 345
24 3300050507 nmdc:mga05p37_162_c1 nmdc:mga05p37_162_c1_49643_50725 345
25 3300050508 nmdc:mga09592_165_c1 nmdc:mga09592_165_c1_31067_32149 345
26 3300050508 nmdc:mga09592_239164_c1 nmdc:mga09592_239164_c1_118_1188 345
27 3300050509 nmdc:mga0qj67_9998_c1 nmdc:mga0qj67_9998_c1_1570_2652 345
28 3300050510 nmdc:mga06r32_265_c1 nmdc:mga06r32_265_c1_24074_25156 345
29 3300050511 nmdc:mga08y16_95537_c1 nmdc:mga08y16_95537_c1_1804_2886 345
30 3300050512 nmdc:mga0n895_67424_c1 nmdc:mga0n895_67424_c1_2368_3450 345
31 3300047322 Ga0495680_0159139 Ga0495680_0159139_372_1499 346
32 3300049571 Ga0501034_0151105 Ga0501034_0151105_145_1251 347
33 3300049572 Ga0501036_0197398 Ga0501036_0197398_306_1394 347
34 3300049578 Ga0501042_0172429 Ga0501042_0172429_40_1116 347
35 3300050507 nmdc:mga05p37_453784_c1 nmdc:mga05p37_453784_c1_314_1357 347
36 3300006051 Ga0075364_10130993 Ga0075364_101309932 348
37 3300028558 Ga0265326_10000005 Ga0265326_10000005130 349
38 3300028573 Ga0265334_10000024 Ga0265334_1000002422 349
39 3300028666 Ga0265336_10004520 Ga0265336_100045205 349
40 3300028800 Ga0265338_10002392 Ga0265338_1000239213 349
41 3300029957 Ga0265324_10002577 Ga0265324_100025772 349
42 3300049574 Ga0501038_0053090 Ga0501038_0053090_1152_2258 349
43 3300049590 Ga0501074_0031103 Ga0501074_0031103_1573_2679 349
44 3300006846 Ga0075430_100000692 Ga0075430_1000006924 350
45 3300049568 Ga0501031_0071276 Ga0501031_0071276_1022_2098 350
46 3300050509 nmdc:mga0qj67_558_c1 nmdc:mga0qj67_558_c1_2366_3502 350
47 3300005937 Ga0081455_10031290 Ga0081455_100312903 351
48 3300006844 Ga0075428_100000533 Ga0075428_10000053317 352
49 3300006846 Ga0075430_100054064 Ga0075430_1000540642 352
50 3300050510 nmdc:mga06r32_10535_c1 nmdc:mga06r32_10535_c1_4809_5870 352
51 iso_pu_bacteria 2773857762 2774394546 352
52 iso_pu_bacteria 2891968417 2891972949 352
53 iso_pu_bacteria 2675903059 2676485097 353
54 iso_pu_bacteria 2811994878 2812349347 353
55 3300046475 Ga0495639_0061634 Ga0495639_0061634_301_1368 354
56 3300050507 nmdc:mga05p37_100209_c1 nmdc:mga05p37_100209_c1_2298_3365 354
57 3300050507 nmdc:mga05p37_55016_c1 nmdc:mga05p37_55016_c1_1093_2160 354
58 iso_pu_bacteria 2808606439 2809194598 354
59 iso_pu_bacteria 8003856774 8003861041 354
60 3300005354 Ga0070675_100263097 Ga0070675_1002630972 355
61 3300006844 Ga0075428_100002046 Ga0075428_10000204612 355
62 3300006846 Ga0075430_100010443 Ga0075430_1000104435 355
63 3300006847 Ga0075431_100001105 Ga0075431_10000110513 355
64 3300006880 Ga0075429_100000518 Ga0075429_10000051819 355
65 3300009147 Ga0114129_10000440 Ga0114129_1000044027 355
66 3300014325 Ga0163163_10193490 Ga0163163_101934903 355
67 3300017792 Ga0163161_10006389 Ga0163161_100063893 355
68 3300025935 Ga0207709_10042888 Ga0207709_100428883 355
69 3300025940 Ga0207691_10062244 Ga0207691_100622442 355
70 3300050507 nmdc:mga05p37_155_c1 nmdc:mga05p37_155_c1_1065_2135 355
71 3300050508 nmdc:mga09592_1_c1 nmdc:mga09592_1_c1_84629_85699 355
72 3300050509 nmdc:mga0qj67_12_c2 nmdc:mga0qj67_12_c2_21347_22417 355
73 3300050510 nmdc:mga06r32_7_c1 nmdc:mga06r32_7_c1_21975_23045 355
74 iso_pu_bacteria 2515154155 2515851321 355
75 3300005329 Ga0070683_100112878 Ga0070683_1001128782 356
76 3300005535 Ga0070684_100113584 Ga0070684_1001135842 356
77 3300007076 Ga0075435_100229200 Ga0075435_1002292002 356
78 3300032002 Ga0307416_100152692 Ga0307416_1001526922 356
79 3300044901 Ga0466960_0017999 Ga0466960_0017999_592_1695 356
80 3300044901 Ga0466960_0026955 Ga0466960_0026955_317_1441 356
81 3300045976 Ga0466967_0101641 Ga0466967_0101641_462_1535 356
82 3300047320 Ga0495672_0028446 Ga0495672_0028446_2430_3527 356
83 3300049585 Ga0501069_0132980 Ga0501069_0132980_23_1108 356
84 3300049588 Ga0501072_0094838 Ga0501072_0094838_919_1992 356
85 3300031456 Ga0307513_10046243 Ga0307513_100462432 357
86 3300037312 Ga0395899_0134622 Ga0395899_0134622_283_1359 357
87 3300037418 Ga0395900_0328667 Ga0395900_0328667_404_1480 357
88 3300037466 Ga0395898_0184013 Ga0395898_0184013_149_1225 357
89 3300037471 Ga0395905_0121104 Ga0395905_0121104_218_1294 357
90 3300049581 Ga0501047_0032917 Ga0501047_0032917_2657_3793 357
91 iso_pu_bacteria 2622736626 2623590704 357
92 iso_pu_bacteria 2855676851 2855680077 357
93 iso_pu_bacteria 2855683550 2855688642 357
94 iso_pu_bacteria 2856858025 2856864363 357
95 iso_pu_bacteria 2858848962 2858853759 357
96 iso_pu_bacteria 2858868258 2858868704 357
97 iso_pu_bacteria 2858888857 2858892949 357
98 iso_pu_bacteria 2858895516 2858898425 357
99 iso_pu_bacteria 2858902515 2858906699 357
100 iso_pu_bacteria 2867302475 2867303646 357
101 iso_pu_bacteria 2867312974 2867315981 357
102 iso_pu_bacteria 2867319477 2867320845 357
103 iso_pu_bacteria 2867507094 2867511882 357
104 iso_pu_bacteria 2869048445 2869049512 357
105 iso_pu_bacteria 2869068681 2869074383 357
106 iso_pu_bacteria 2880489317 2880489816 357
107 iso_pu_bacteria 2887478801 2887481271 357
108 iso_pu_bacteria 2929226422 2929232495 357
109 iso_pu_bacteria 2996221748 2996227690 357
110 iso_pu_bacteria 649633069 649814110 357
111 iso_pu_bacteria 8001781756 8001789822 357
112 iso_pu_bacteria 8003870546 8003875550 357
113 iso_pu_bacteria 8054704163 8054707900 357
114 iso_pu_bacteria 8054727385 8054731844 357
115 iso_pu_bacteria 8054734606 8054737437 357
116 iso_pu_bacteria 8055412473 8055418693 357
117 3300005435 Ga0070714_100010312 Ga0070714_1000103128 358
118 3300005937 Ga0081455_10010591 Ga0081455_100105918 358
119 3300005981 Ga0081538_10040165 Ga0081538_100401653 358
120 3300006847 Ga0075431_100001906 Ga0075431_1000019062 358
121 3300025929 Ga0207664_10003477 Ga0207664_100034772 358
122 3300050509 nmdc:mga0qj67_32138_c1 nmdc:mga0qj67_32138_c1_2360_3442 358
123 3300050510 nmdc:mga06r32_2542_c1 nmdc:mga06r32_2542_c1_381_1463 358
124 3300005356 Ga0070674_100056583 Ga0070674_1000565832 359
125 3300009098 Ga0105245_10126033 Ga0105245_101260331 359
126 3300025924 Ga0207694_10136761 Ga0207694_101367612 359
127 3300049584 Ga0501068_0038722 Ga0501068_0038722_1219_2313 359
128 3300003203 JGI25406J46586_10014316 JGI25406J46586_100143163 360
129 3300005337 Ga0070682_100140281 Ga0070682_1001402812 360
130 3300005985 Ga0081539_10000267 Ga0081539_10000267115 360
131 3300031838 Ga0307518_10090042 Ga0307518_100900422 360
132 3300046507 Ga0495606_0002293 Ga0495606_0002293_16885_17973 360
133 3300046616 Ga0495668_0000201 Ga0495668_0000201_43765_44853 360
134 3300046660 Ga0495625_0010710 Ga0495625_0010710_5775_6863 360
135 3300048091 Ga0495626_0000090 Ga0495626_0000090_5744_6832 360
136 3300048905 Ga0496102_0023443 Ga0496102_0023443_687_1775 360
137 3300048906 Ga0496103_0030615 Ga0496103_0030615_1368_2456 360
138 3300049584 Ga0501068_0125332 Ga0501068_0125332_193_1296 360
139 3300061734 Ga0530510_0114019 Ga0530510_0114019_653_1756 360

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13378

MR_MLE_C

Enolase C-terminal domain-like

173

387

0.96

PF02746

MR_MLE_N

Mandelate racemase / muconate lactonizing enzyme, N-terminal domain

33

154

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2zad-assembly1.cif.gz_A crystal structure of muconate cycloisomerase from thermotoga maritima msb8 0.9668 2 345
3dfy-assembly2.cif.gz_J crystal structure of apo dipeptide epimerase from thermotoga maritima 0.9664 1 345
3dfy-assembly2.cif.gz_K crystal structure of apo dipeptide epimerase from thermotoga maritima 0.9659 1 345
3dfy-assembly2.cif.gz_P crystal structure of apo dipeptide epimerase from thermotoga maritima 0.9658 1 345
3dfy-assembly2.cif.gz_N crystal structure of apo dipeptide epimerase from thermotoga maritima 0.9658 1 345
ID Description Score Start End Superfamily
3r0kA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Enolase-like C-terminal domain 0.9543 116 345 3.20.20.120
2zadB02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Enolase-like C-terminal domain 0.9523 119 343 3.20.20.120
3q45A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Enolase-like C-terminal domain 0.9502 115 356 3.20.20.120
af_I1K3D5_202_436_3.20.20.120 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Enolase-like C-terminal domain 0.9499 123 354 3.20.20.120
3jvaC02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Enolase-like C-terminal domain 0.9486 116 353 3.20.20.120
ID Description Score Start End GO Terms
AF-A0A0K2ZPK1-F1-model_v4 Dipeptide epimerase (EC 5.1.1.-) 0.9878 2 284 GO:0016855
GO:0046872
AF-A0A7C3C3J6-F1-model_v4 Dipeptide epimerase (EC 5.1.1.-) 0.9832 2 257 GO:0016855
GO:0046872
AF-A0A4R7U943-F1-model_v4 deleted 0.9824 2 351
AF-A0A7W5ZEX4-F1-model_v4 deleted 0.9823 2 353
AF-A0A429X3T9-F1-model_v4 Dipeptide epimerase (EC 5.1.1.-) 0.9798 2 356 GO:0016855
GO:0046872

Feature Viewer

pLDDT pTM Quality
96.09 0.94 High
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Predicted Structure (AlphaFold2)

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